rna9055, rna9055 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9055
Unique Name	rna9055
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4796
Alignment location	KK037251.1:225168..225948 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100012g7.1922.mrna
Orig protein id	gnl\|cribi\|Naga_100012g7.1922
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:225168..225948 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g7	gene8782	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9055	rna9055-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21590.1	cds9025	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:225168..225948+
coding sequence from alignment at KK037251.1:225168..225948+

mRNA sequence

>rna9055 ID=rna9055|Name=rna9055|organism=Nannochloropsis gaditana|type=mRNA|length=4796bp
AAAAAAAACAATTCACGGTCGCCAGTTGTCTTAAGTCGCCCCTCCCGAGA
TAGCCAAGGACGCAACTTAGCACCAGCCTGGACGCCTGCTTTCGACCCTC
CGGACAAGAATTACTTCGCCTGACATTCCCTTGGCATAAGCACCATGCAT
ATCAAGCAAGTGGTCTTGTCAGGCTTCAGGTCCTTCCGGCATCAGTCGGA
AATCGAACCTTTCAGCGCCAGACACAATGTCATCATCGGACGTAATGGGT
CAGGAAAGTCGAATTTTTTCGCCGCGATCCAATTTGTCCTCCTTTCCCAA
AAATTCATGCATCTCCGGCAAGAAGAACGTCAGCAATTGCTTCATGAAGG
TGCGGGCGCTAACGTGATGACCGCCTTCGTCGAGGTCATCTTTGACAATT
CCGATGGCCGCATGACAGTCGAGGGCGATGAAGTGGTGTTGCGCCGCACG
ATTGGCGTGAAGAAGGACGAGTTTTTCCTGAACCGTAAACGTGTCACCAA
GCAAGAAGTGTCGTCGCTGTTGGAGTCGGCGGGCTTCTCTCGCTCGAACC
CATACTACATCGTGCAGCAAGGTAAAGTGAACATGCTGACCCTCATGCGA
GACGACCAACGACTGGATTTGCTCAAGGAGGTGGCAGGCACCAAGGTCTA
CGAAGAACGCCGGGCCGAGTCCCTGCAAATCATCCATGAAACGGACCACA
AACGTGAGAAAATCCAAGAGGTGGTATCGTACATCGAGGAGCGGCTTGGG
GAGTTGGACGAAGAGAAGGAGGAACTCCGAGCCTACCAGCGCCTGGACAA
GGACCGACGGGCGTTGGAATACACCCTGTACGACACCGAATTGAAAGGAG
CTCGGGCAGATCTTAACAAGGCGGAGGAAGCCCGGTTGCGTGAGATCGAG
CGGGCCGACGATCTGCACCGGCGTTTGCACGATAGCCGAGACGCGCTGCA
GGAAGTGGAGGAACGGATGGAGGCGCTCCGGCTTGGGTTGGAGAAGAAGT
CCGGGGAACGCGGGAGGGTGGAGGGCGAGCGTGAGGAGCTACTTGCTCAG
CGTGAAGGGGCGGTGAACGAAGAGAAGACGCTGTGGGACCGGGTGGAAGG
GGAGGAAGCAAAGCAAGAAGACTTGCGAGCCCAGCTACTGGAGGCGGAGA
AGGAGATAGACACGGTGCGGGAACAGCTCAGGTCGACGATTGAACCGGAG
TACAACGCCGCCAAGAAAGCAGTGGACGATTTGAAGCGGGAATTGAAGGA
AAAGGAAGCCATCAGGGCGGAGCTTCATGACAAGCAAGGGCGCCGGGCAG
CATTTCGGAGTGTGGCCGAGCGGGACGCCCACTTGAAAAAGCAACAAGCG
CAAGTAGGGGCAGCGGTGCAGGAGAGGGAGGGATTGATCCGGAAAAATCA
GGCCGAACGAGAGAAGGCGCTCAGGCAGGTGGAGCAGGAGAAAGGGCAGG
TGGCGCGGCGGGAGAAGGAACTCGGCCAGAAGGAGGAGGCCTTGGCCGCG
TTGGGTCAGTCCCGCTCGGAGATGGTGGGCACCCGGAACCGCAACCAAGA
CATTCGCAAGCAAAAGCAGGAATCAATTGCGGAATTGGAGGACAGGAAGT
CGCGTTTGGAAGACAACATTCGCAAGGCGGAGCAGACGCTGCGGTTTGCC
ATGCCCAAGCACATTGCCCTGGGCCTGGAGACGGTGGCGCGCCTGGCGGA
GGAGGAAAGGATCTCAGGGTGTTATGGACCCGTGTACTCTCTGTTGGAGC
TCAAGGATCCCAAGTTCCGGCAAGCCGTAGAGGTGGCGGCGGGCAACAGT
TTGTTCAACGTGGTAGTGGACACAGACGAGACGGCGGCCAAGCTGATGAA
ACGGCTCGAGGAGGAGCGAGGCGGGGGAGGAGGTCGGGTGTGTTTCATGC
CGTTGAACCGTCTGCGGGTCAAGCCGGTCTCCTCATACCCGGACTCGGCC
GATGTCGTCCCTTTGTTAAGCGCGGCACTCACATATCCAAGACATGTGGA
CAAAGCCATGCGGCAGATTTTTGGGTTGAAACTTTTGGCCCGTGACTTGG
AGGTAGCCGCGCGATTCAGTGAGACGGCAGGCATGGATGCGATCACCCTG
GACGGGGACGAGGCGAGTCGGAAAGGGTCCATGCAAGGGGGTTATCACGA
CGAAAGGAACTCCAAGTTTGCCCAAGTCCTTGCCATTCGGGCCGCCAAGG
CGGAGCTACGGCCCGTGACGGAGGCCTTGCAAGAAGAGGAGAAGGCACAT
CAGGAACTGGACACGGCCATGTCGCGGCTTTTGGCGGAAATGCAGAAGAA
AGAGCGCGATGCGAGCCGGCTCCAAGATGAGGTCGATACCCTGTCCCGTG
AAATGCGTGCAGGGAAGCAACGTATCGAGATGCTCGTGGCGCACATTGCC
AAAATCGAGGAGTCCCTACCTATGGAGGAACAATCCTTGGCGGACATGCG
TCGTCAGCTCGAAGTATGGGCTAGCGAACTGGGAACCCCATTGGACTCCA
AGCTGTCTGCTGCCGATACTCGCACTCTGCGTGAGATCGAGATTCGTCTT
CCCATCCTTGCGCAGGAGCTTAAAGTGGCCACGGAAGCACTTCAAGCCAA
GGCCTCGGCGCGGTCGCGCCTGACCTACCGATTGAACGAGAACCTGGTCC
GGACCAAAGAGAAGCTTCTGGAATGTTTGTGGCCGGAGCATGGGGGAACT
GCCCACGTGGAAAAAGTGGCCATGGTAGAGAACCGACGTTTGTTGGCGAT
GAAGAAAAAAGAAGTGGAGGTATGGGCCGCGCGAGTGAAGGACGTGGAAG
GGCGACTTGCGGCCATGGACGCGGCCAGCGAGGAGGAGAAGGAGGAAGAA
CGCACCTTGAAAGCCCAGGCGGAGGAGGAACGAGCCGGAGAAGCGTCCTT
GAAAGAATTGGTGGCAGAGGTGGCCAAAGCGCAGGAAAAGCTGCTGAACA
AGCGGTCCATGGCCATGCAAAAGCGAGATGCCTCCTTGAAGAAAATCCAA
GAGCTGGGGTCGCTCCCGGCGGCCGAGCTCGAGTTGTACAAGACCCTGGG
TATCAAACAACTATACAGGCGCTTGCACGAATGCAATGAGGAACTGAAGC
AGTACAGCCATGTGAACAAGAAGGCCCTGGACCAGTATGTCAACTTTTCG
GAGCAGCGAGAGGAGCTGCTCATGCGCAAGGCGGAGCTGGACGAAGGGGC
CAAGGCCATTGAAGGCTTGATTACCAACTTAGATCGTCAAAAAGATGAGG
CCATCATCCGAACCTTCCGGGGCGTGTCCAAGCATTTTGCGGACGTCTTC
AAGGAGCTTGTTCCTAATGGCTACGGGCGGATGGTGATGAAAACGACAGC
CGATACTACCCAGGACATTAATGAGGAGACAGAGGAGGTTGGAAAGGACG
ACGAGGACGATCAGGACGAGGGGCCGGAGGAGGAGGGTCTAGCGGCTGAT
GGCGGGTCCAAAGGGAAGCAGCAACGGAAAGGAAAATCTGCAGAGCCTCC
TCTTAAAGTGTCCCAGTTTGCGGGAATCCAAATACAGGTCTCATTCACGG
GGACGGGGGATAGGCACCTGATGCAGCAGCTTTCTGGCGGGCAGAAGGCT
TTGGTCGCCCTGGCTTTGATTTTTGCCATCCAACGGTGCGATCCTGCGCC
CTTTTACCTCTTCGACGAAGTCGATCAAGCCCTCGATTCCACGTATCGCG
CGGCCGTCGCTGCGTTGATCAATCGACAGGCGCATTCGGAGACGAACCCG
GCCCAGTTTATCACTAGCACCTTCCGTCCGGAAATGGTGCGTGTTGCGGA
TCGATGTTATGGGATCAGCCACCAGAATAAGGTCTCCAATATCGATATAC
TGGACAAGGAAACGGCGCTGGAATTTGTCAGGGAGCTGCAAAGTGAGGAA
GAGGCGCTTGAGTCAGATACAGGGGCAGGGGGAGGCGGAAAGCCGAGAAA
GAAAGCGCCAGTGCTTCACACGAGGAGAGACGGGGAGGAAGGCGTGGGGG
TTGAAGAAGAGGAGGGGGATGAGGAGGACCAGGAGGATTTCATGGATGAG
GAAGGCAGTGAAAGTGACGTGCCGAGCAAAAAAAGGGTTCGAAATTCTGG
GGAGGGAGGGAGAAAGGGACGGACAGGAGGAATAACGGTGCACACAAACT
AGAAGTTGACTCCTACCTCGCGTTTCATGAAGAGACAGTATAGGACACGA
AGGCTTTGAATGAAAAGCAGCTGAGAAAACTGGAACCAGGCGATGCATGA
AAGCGCTCCCTAACTTGCCTCTCGTGTCTGAATGGGTGACGTCATGCTTC
GGAATATACGGCAATCACGGATGTGGCATCGTACGATAAAGTATACGGTT
GACCTGTGGGCTACACGCAATGCGATGCTGATGAGAGGTGGTCTCAATGT
AGAAGGAGCAGCGTTTTAGATGTTTGAAAGTAGTTTGTACTGGATGCCGT
GAGCCTCACGGGAAGCGACGACGCATTTGTCTAATTACTTTGAGCCTCTC
GGGAGACGACCATCGTCAAAATCGACACTAAGATGAAATCGATACAGCAC
AAAAACTAATAACGGAGATTATAGGGACTGTACTCGAATCAAATTGCATA
AAGGGCTGCTGGTTTAAAGCGGAGACAGGAAAGAAAAAATGTGGAAAGGT
CAACAATGTGTGCAGAGCTGGCGCAGATGGATGAACATATCACTATGCTA
GCGACAACCGATGAATGTACTAACATGTACGCATCTTGCACAAAAGCCAG
CTATCGTACCATGGAAGGTCATTTCAGATTAACAAAGCGTCATTTC

protein sequence of rna9055

>rna9055-protein ID=rna9055-protein|Name=rna9055|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MPACLDREGDGHGGNQDVVEMRADGDWDVEESDDAFFALGLLSPVAAGRA
AAETEGIELSKRKRGNGSDLKGRGASRQKTKRTVRSFWRETSLSNPATNS
TLSGKKEYRSLFFHSRRSCLTKFGGMCVGTGESPRVVSTYSAERVSEGWG
SARASKRETVERNGGT

mRNA from alignment at KK037251.1:225168..225948+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9055 ID=rna9055|Name=rna9055|organism=Nannochloropsis gaditana|type=mRNA|length=781bp|location=Sequence derived from alignment at KK037251.1:225168..225948+ (Nannochloropsis gaditana)
ATGCCTGCTTGCCTGgatagagagggagatggccatGGGGGAAACCAGGA
TGTGGTGGAGATGCGGGCGGACGGGGATTGGGACGTCGAAGAGAGTGACG
ACGCCTTTTTCGCGCTGGGTCTCCTCTCTCCAGTGGCAGCGGGCCGGGCG
GCGGCTGAGACCGTGGGtggcgagatggaggacacCTGACCAGATTAACA
AATTAATTAGGAGGGGATTGAGCTTTCAAAACGTAAAAGGTAGGTGCTGT
GATTGATAGAGTCATTTTTGGGAATGAAAAAGTAATAACGTAGTCGAGAA
AGTATAATGGGAGGCGCTCAGGGTATGCCCCATACGGCACGGAACCAGAG
GCGTTACCCCTACTCGGAGTCGCCAATGAGGACTTTGTCGGCTGAACCCT
ACCAGCTCAAGCGTCACTCATGAATGGAATCTCACCAATGATTGATGACC
CTCATTGGTGACGCCGAGTAGGGGTAACGGCTCTGAcctgaagggaaggg
gagcttcgcgccaaaaaacAAAACGAACCGTGCGCtctttttggcgcgaa
acaAGCCTTTCCAATCCTGCCACAAACAGCACGCTTTCTGGTAAAAAGGA
ATAtcgctctctctttttccattcaaggaggagctgtTTAACAAAATTTG
GAGGAATGTGCGTGGGCACTGGAGAATCTCCTCGGGTGGTATCAACGTAC
TCTGCGGAAAGAGTGTCGGAAGGTTGGGGATCAGCCCGGGCTTCAAAAAG
AGAAACTGTGGAAAGGAATGGGGGTACTTAG

Coding sequence (CDS) from alignment at KK037251.1:225168..225948+

>rna9055 ID=rna9055|Name=rna9055|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at KK037251.1:225168..225948+ (Nannochloropsis gaditana)
ATGCCTGCTTGCCTGgatagagagggagatggccatGGGGGAAACCAGGA
TGTGGTGGAGATGCGGGCGGACGGGGATTGGGACGTCGAAGAGAGTGACG
ACGCCTTTTTCGCGCTGGGTCTCCTCTCTCCAGTGGCAGCGGGCCGGGCG
GCGGCTGAGACCGAGGGGATTGAGCTTTCAAAACGTAAAAGGGGTAACGG
CTCTGAcctgaagggaaggggagcttcgcgccaaaaaacAAAACGAACCG
TGCGCtctttttggcgcgaaacaAGCCTTTCCAATCCTGCCACAAACAGC
ACGCTTTCTGGTAAAAAGGAATAtcgctctctctttttccattcaaggag
gagctgtTTAACAAAATTTGGAGGAATGTGCGTGGGCACTGGAGAATCTC
CTCGGGTGGTATCAACGTACTCTGCGGAAAGAGTGTCGGAAGGTTGGGGA
TCAGCCCGGGCTTCAAAAAGAGAAACTGTGGAAAGGAATGGGGGTACTTA
GATGCCTGCTTGCCTGgatagagagggagatggccatGGGGGAAACCAGG
ATGTGGTGGAGATGCGGGCGGACGGGGATTGGGACGTCGAAGAGAGTGAC
GACGCCTTTTTCGCGCTGGGTCTCCTCTCTCCAGTGGCAGCGGGCCGGGC
GGCGGCTGAGACCGAGGGGATTGAGCTTTCAAAACGTAAAAGGGGTAACG
GCTCTGAcctgaagggaaggggagcttcgcgccaaaaaacAAAACGAACC
GTGCGCtctttttggcgcgaaacaAGCCTTTCCAATCCTGCCACAAACAG
CACGCTTTCTGGTAAAAAGGAATAtcgctctctctttttccattcaagga
ggagctgtTTAACAAAATTTGGAGGAATGTGCGTGGGCACTGGAGAATCT
CCTCGGGTGGTATCAACGTACTCTGCGGAAAGAGTGTCGGAAGGTTGGGG
ATCAGCCCGGGCTTCAAAAAGAGAAACTGTGGAAAGGAATGGGGGTACTT
AGATGCCTGCTTGCCTGgatagagagggagatggccatGGGGGAAACCAG
GATGTGGTGGAGATGCGGGCGGACGGGGATTGGGACGTCGAAGAGAGTGA
CGACGCCTTTTTCGCGCTGGGTCTCCTCTCTCCAGTGGCAGCGGGCCGGG
CGGCGGCTGAGACCGAGGGGATTGAGCTTTCAAAACGTAAAAGGGGTAAC
GGCTCTGAcctgaagggaaggggagcttcgcgccaaaaaacAAAACGAAC
CGTGCGCtctttttggcgcgaaacaAGCCTTTCCAATCCTGCCACAAACA
GCACGCTTTCTGGTAAAAAGGAATAtcgctctctctttttccattcaagg
aggagctgtTTAACAAAATTTGGAGGAATGTGCGTGGGCACTGGAGAATC
TCCTCGGGTGGTATCAACGTACTCTGCGGAAAGAGTGTCGGAAGGTTGGG
GATCAGCCCGGGCTTCAAAAAGAGAAACTGTGGAAAGGAATGGGGGTACT
TAG

Synonyms

Publications