rna9051, rna9051 (mRNA) Nannochloropsis gaditana

Overview
Namerna9051
Unique Namerna9051
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length357
Alignment locationKK037251.1:205170..205991 +

Link to JBrowse

Properties
Property NameValue
Producttrafficking protein particle complex subunit 2-like protein
Orig transcript idgnl|cribi|Naga_100012g2.1932.mrna
Orig protein idgnl|cribi|Naga_100012g2.1932
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:205170..205991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g2gene8778Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9051rna9051-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21600.1cds9021Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9051 ID=rna9051|Name=rna9051|organism=Nannochloropsis gaditana|type=mRNA|length=357bp
AAACAGAGAAGCCCGTCATAAATCGGCAAGTATGGCTGACGAATCAAATA
GCAACGGAGGAGAGCCTCTGAGTAAAAACGCCCTCAAAAAGAAATTGAAG
GCGGAGGCCCTTGCCAAGGCGAAAGCGGAGAAATTAGCCGCTGCACCCGC
CCCCGCGACACGGAGCAAAGCGGGAGCAGATGGTGGCGACAATGAGGAGG
AGCTCACGCCGTCCCAGTATTTCGAAGCCCGCTTGCGCATGATTGCCGAG
ATGGAAGCGGCGGGGACGAGCCCCTACCCTCATAAGTTCCATGTCACCCA
GGGCATTCCAGCGTTTGTGGACGCGTATGCGGGGTTGGAGTCAGGAAGAA
AGTGAGT
back to top

protein sequence of rna9051

>rna9051-protein ID=rna9051-protein|Name=rna9051|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSK
SVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTEN
NPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVY
NQSISSNSAHEGGGGLATLSSSRLLPSTSSISASFSSSLTSGT
back to top

mRNA from alignment at KK037251.1:205170..205991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9051 ID=rna9051|Name=rna9051|organism=Nannochloropsis gaditana|type=mRNA|length=822bp|location=Sequence derived from alignment at KK037251.1:205170..205991+ (Nannochloropsis gaditana)
TTTGACACGACGTTGGGCCTTCCACAATCCACAGATACGCCATGATAGCC
TGCATAGCTGTGGtagggaagaagaacgagctCCTTTACCTCAAGCCATT
CCTTGCTCAACCCGACGCAAGCAGCGACTATTTTCTCAGTTTCCATTTCA
TTGCCCACAGTGCCCTCGACGCCTTTGACGAGCGCAGCAAATCCGTCTCA
CGgcgaccttctccttcctttccgtcgcCTGCATCCACCAATGACATGTT
TTTGGGATATTTATGTCCGATCGAGGAATTTCGGGTCTACGGGTACAAAA
CAAGCACCCAGATCAAATTCCTGGCTATCCTCACGGAAAACAATCCTGTG
CGTGAAAACGACCTGAAAAGTGTCTTTCAAGGACTGCACATCTTGTATGT
CAGCTACTTGCAatctcccttctcacccttGACCGGTAAAATTACCTCGG
AACGCTTTTCAAAAGGAGTGGAACGGCAGGTGGTTGTGTACAATCAAAGT
ATAAGCTCCAACTCCGcccatgaaggagggggcggtctGGCAACGTTATC
TTCATCGAGGCTTTTACCATCGACCTCTTCAATAagtgcctccttttcta
gcTCGCTAACATCAGGCACATGAATATTTGTAAAAAGCTCTTAGGGTGTg
ccgggaaaaaaaaatattgGACAACCACTATCGTAGCAGGGATCGGGATA
TTTGGCAGGATTTTGCATGTTGTATCGGCTCGTTGTCATATTTTTTTTAC
AACGCATTTCACAGTGATTCATTGAAATTTCTAAATCCTCTCAacatgct
ctcctcccaaaaGACTTGGGAG
back to top

Coding sequence (CDS) from alignment at KK037251.1:205170..205991+

>rna9051 ID=rna9051|Name=rna9051|organism=Nannochloropsis gaditana|type=CDS|length=582bp|location=Sequence derived from alignment at KK037251.1:205170..205991+ (Nannochloropsis gaditana)
ATGATAGCCTGCATAGCTGTGGtagggaagaagaacgagctCCTTTACCT
CAAGCCATTCCTTGCTCAACCCGACGCAAGCAGCGACTATTTTCTCAGTT
TCCATTTCATTGCCCACAGTGCCCTCGACGCCTTTGACGAGCGCAGCAAA
TCCGTCTCACGgcgaccttctccttcctttccgtcgcCTGCATCCACCAA
TGACATGTTTTTGGGATATTTATGTCCGATCGAGGAATTTCGGGTCTACG
GGTACAAAACAAGCACCCAGATCAAATTCCTGGCTATCCTCACGGAAAAC
AATCCTGTGCGTGAAAACGACCTGAAAAGTGTCTTTCAAGGACTGCACAT
CTTGTATGTCAGCTACTTGCAatctcccttctcacccttGACCGGTAAAA
TTACCTCGGAACGCTTTTCAAAAGGAGTGGAACGGCAGGTGGTTGTGTAC
AATCAAAGTATAAGCTCCAACTCCGcccatgaaggagggggcggtctGGC
AACGTTATCTTCATCGAGGCTTTTACCATCGACCTCTTCAATAagtgcct
ccttttctagcTCGCTAACATCAGGCACATGA
back to top
Synonyms
Publications