EWM21600.1, cds9021 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|585101855|gb|EWM21600.1| (trafficking protein particle complex subunit 2-like protein [Nannochloropsis gaditana]) HSP 1 Score: 390.578 bits (1002), Expect = 2.345e-137 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISSNSAHEGGGGLATLSSSRLLPSTSSISASFSSSLTSGT 193
MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISSNSAHEGGGGLATLSSSRLLPSTSSISASFSSSLTSGT
Sbjct: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISSNSAHEGGGGLATLSSSRLLPSTSSISASFSSSLTSGT 193
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|553191954|ref|XP_005855489.1| (trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|553195835|ref|XP_005856215.1| trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292839|gb|EKU20141.1| trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293569|gb|EKU20869.1| trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 237.654 bits (605), Expect = 5.574e-78 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQ 113
MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQ
Sbjct: 6 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQ 118
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|299470717|emb|CBN79763.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 137.887 bits (346), Expect = 3.193e-38 Identity = 71/152 (46.71%), Postives = 99/152 (65.13%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFL-AQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYN 151
MI CIA++G++NE L+L+ + A+ + D L H I HS+LD ER R S + ST DMFLG+LCPI+E+RVYGY TST++K LA+L + N +RE +LK VF +H YV+YL++PFSPL + S +F V+RQ+ YN
Sbjct: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVVGERKVG---RKGASGAADVST-DMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYN 148
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|1214701197|gb|OWZ13626.1| (Trafficking protein particle complex subunit [Phytophthora megakarya]) HSP 1 Score: 121.324 bits (303), Expect = 7.879e-32 Identity = 61/153 (39.87%), Postives = 97/153 (63.40%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
MIAC+AV+G N LY++ F + + L FH+IAH +LD +E+ + +S +DM++G+L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+ F +H LYV+ + +PF+PL ++TS+ F K V VV +N S
Sbjct: 1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ITSSKDDMYMGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHNTS 139
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|698793424|ref|XP_009829744.1| (hypothetical protein H257_06273 [Aphanomyces astaci] >gi|574115311|gb|ETV80797.1| hypothetical protein H257_06273 [Aphanomyces astaci]) HSP 1 Score: 120.939 bits (302), Expect = 9.884e-32 Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
MIAC+A+VG N L+++ + D LSFH++AH ALD +ER K S +DM+LG+L P+E+FRVYGY T+T +K LAI+ ++ P++E+D+++ F +H LYV+ + +PF+ L +I S +F + V V+ +NQ+
Sbjct: 1 MIACVAIVGANNNPLFVRAYAEDDD------LSFHYVAHIALDIVEERVKQ-------------SKDDMYLGFLGPVEDFRVYGYVTNTLVKLLAIV-QDTPMKESDMRAFFSVMHNLYVNAMSNPFAVLGERIASAKFDRQVTSLVLQHNQT 133
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|695463681|ref|XP_009538778.1| (hypothetical protein PHYSODRAFT_532679 [Phytophthora sojae] >gi|348666089|gb|EGZ05917.1| hypothetical protein PHYSODRAFT_532679 [Phytophthora sojae]) HSP 1 Score: 120.553 bits (301), Expect = 1.270e-31 Identity = 61/153 (39.87%), Postives = 97/153 (63.40%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
MIAC+AV+G N LY++ F + + L FH+IAH +LD +E+ + +S +DM+LG+L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+ F +H LYV+ + +PF+PL ++TS+ F K V VV +N +
Sbjct: 1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ISSSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHNTA 139
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|301115442|ref|XP_002905450.1| (trafficking protein particle complex subunit 2-like protein [Phytophthora infestans T30-4] >gi|262110239|gb|EEY68291.1| trafficking protein particle complex subunit 2-like protein [Phytophthora infestans T30-4]) HSP 1 Score: 120.553 bits (301), Expect = 1.462e-31 Identity = 61/151 (40.40%), Postives = 96/151 (63.58%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYN 151
MIAC+AV+G N LY++ F + + L FH+IAH +LD +E+ + +S +DM+LG+L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+ F +H LYV+ + +PF+PL ++TS+ F K V VV +N
Sbjct: 1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ITSSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|675172819|ref|XP_008895294.1| (hypothetical protein PPTG_04758 [Phytophthora parasitica INRA-310] >gi|566015675|gb|ETI38586.1| hypothetical protein F443_15736 [Phytophthora parasitica P1569] >gi|567953130|gb|ETK78789.1| hypothetical protein L915_15278 [Phytophthora parasitica] >gi|567981783|gb|ETL32219.1| hypothetical protein L916_15170 [Phytophthora parasitica] >gi|568011298|gb|ETL85476.1| hypothetical protein L917_14999 [Phytophthora parasitica] >gi|568041201|gb|ETM38620.1| hypothetical protein L914_15133 [Phytophthora parasitica] >gi|568104798|gb|ETN19443.1| hypothetical protein PPTG_04758 [Phytophthora parasitica INRA-310] >gi|570319409|gb|ETO67357.1| hypothetical protein F444_15714 [Phytophthora parasitica P1976] >gi|570943236|gb|ETP08493.1| hypothetical protein F441_15556 [Phytophthora parasitica CJ01A1] >gi|570974058|gb|ETP36533.1| hypothetical protein F442_15571 [Phytophthora parasitica P10297] >gi|970660416|gb|KUF97968.1| 3-hydroxyacyl-CoA dehydrogenase type-2 [Phytophthora nicotianae]) HSP 1 Score: 119.398 bits (298), Expect = 3.795e-31 Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYN 151
MIAC+AV+G N LY++ F + + L FH+IAH +LD +E+ + +S +DM+LG L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+ F +H LYV+ + +PF+PL ++TS+ F K V VV +N
Sbjct: 1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ITSSKDDMYLGSLGPIEDYRVYGYVTNTSVKFVVVL-QDTPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|673038939|ref|XP_008873430.1| (hypothetical protein H310_09195 [Aphanomyces invadans] >gi|574470860|gb|ETV97869.1| hypothetical protein H310_09195 [Aphanomyces invadans]) HSP 1 Score: 118.627 bits (296), Expect = 6.884e-31 Identity = 59/153 (38.56%), Postives = 97/153 (63.40%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
MIAC+A+VG N L+++ + D LSFH+IAH ALD +ER K S +DM+LG+L P+E+FRVYGY T+T +K +A++ ++ P++++D+++ F +H LYV+ + +PF+ L +ITS +F V+ V+ +NQ+
Sbjct: 1 MIACVAIVGANNNPLFVRAYCEDDD------LSFHYIAHIALDIVEERVK-------------LSKDDMYLGFLGPVEDFRVYGYVTNTLVKLIAVV-QDAPLKDSDMRAFFADVHKLYVNAMSNPFAILGERITSAKFESHVKSLVLQHNQA 133
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|669150132|ref|XP_008610628.1| (hypothetical protein SDRG_06616 [Saprolegnia diclina VS20] >gi|530737624|gb|EQC35866.1| hypothetical protein SDRG_06616 [Saprolegnia diclina VS20]) HSP 1 Score: 114.39 bits (285), Expect = 3.008e-29 Identity = 57/156 (36.54%), Postives = 97/156 (62.18%), Query Frame = 0
Query: 1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISS 156
MI C+A+VG N L+++ F D D LSFH+I H +LD +E+ K+ S +DM+LG+L P+E+FRVYGY T+T +K L ++ ++ P++E++++ +F LH LYV+ + +PF+ + +ITSE+F V ++ +N +I +
Sbjct: 1 MICCVAIVGANNNPLFVRSF----DEDDD--LSFHYIVHISLDIIEEKVKT-------------SKDDMYLGFLGPVEDFRVYGYVTNTLVK-LVVVVQDAPIKESEMRVLFAELHKLYVNAMSNPFAIIGERITSEKFESKVYNLILQHNHTIEA 136 The following BLAST results are available for this feature:
BLAST of EWM21600.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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