EWM21600.1, cds9021 (CDS) Nannochloropsis gaditana

Overview
NameEWM21600.1
Unique Namecds9021
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:205211..205792 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21600.1
Producttrafficking protein particle complex subunit 2-like protein
Orig transcript idgnl|cribi|Naga_100012g2.1932.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:205211..205792 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR006722Sedlin
Homology
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|585101855|gb|EWM21600.1| (trafficking protein particle complex subunit 2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 390.578 bits (1002), Expect = 2.345e-137
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISSNSAHEGGGGLATLSSSRLLPSTSSISASFSSSLTSGT 193
            MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISSNSAHEGGGGLATLSSSRLLPSTSSISASFSSSLTSGT
Sbjct:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISSNSAHEGGGGLATLSSSRLLPSTSSISASFSSSLTSGT 193          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|553191954|ref|XP_005855489.1| (trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|553195835|ref|XP_005856215.1| trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292839|gb|EKU20141.1| trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293569|gb|EKU20869.1| trafficking protein particle complex subunit 2-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 237.654 bits (605), Expect = 5.574e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQ 113
            MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQ
Sbjct:    6 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQ 118          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|299470717|emb|CBN79763.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.887 bits (346), Expect = 3.193e-38
Identity = 71/152 (46.71%), Postives = 99/152 (65.13%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFL-AQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYN 151
            MI CIA++G++NE L+L+ +  A+ +   D  L  H I HS+LD   ER      R   S  +  ST DMFLG+LCPI+E+RVYGY TST++K LA+L + N +RE +LK VF  +H  YV+YL++PFSPL   + S +F   V+RQ+  YN
Sbjct:    1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVVGERKVG---RKGASGAADVST-DMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYN 148          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|1214701197|gb|OWZ13626.1| (Trafficking protein particle complex subunit [Phytophthora megakarya])

HSP 1 Score: 121.324 bits (303), Expect = 7.879e-32
Identity = 61/153 (39.87%), Postives = 97/153 (63.40%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
            MIAC+AV+G  N  LY++ F  + +      L FH+IAH +LD  +E+ +             +S +DM++G+L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+  F  +H LYV+ + +PF+PL  ++TS+ F K V   VV +N S
Sbjct:    1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ITSSKDDMYMGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHNTS 139          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|698793424|ref|XP_009829744.1| (hypothetical protein H257_06273 [Aphanomyces astaci] >gi|574115311|gb|ETV80797.1| hypothetical protein H257_06273 [Aphanomyces astaci])

HSP 1 Score: 120.939 bits (302), Expect = 9.884e-32
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
            MIAC+A+VG  N  L+++ +    D      LSFH++AH ALD  +ER K              S +DM+LG+L P+E+FRVYGY T+T +K LAI+ ++ P++E+D+++ F  +H LYV+ + +PF+ L  +I S +F + V   V+ +NQ+
Sbjct:    1 MIACVAIVGANNNPLFVRAYAEDDD------LSFHYVAHIALDIVEERVKQ-------------SKDDMYLGFLGPVEDFRVYGYVTNTLVKLLAIV-QDTPMKESDMRAFFSVMHNLYVNAMSNPFAVLGERIASAKFDRQVTSLVLQHNQT 133          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|695463681|ref|XP_009538778.1| (hypothetical protein PHYSODRAFT_532679 [Phytophthora sojae] >gi|348666089|gb|EGZ05917.1| hypothetical protein PHYSODRAFT_532679 [Phytophthora sojae])

HSP 1 Score: 120.553 bits (301), Expect = 1.270e-31
Identity = 61/153 (39.87%), Postives = 97/153 (63.40%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
            MIAC+AV+G  N  LY++ F  + +      L FH+IAH +LD  +E+ +             +S +DM+LG+L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+  F  +H LYV+ + +PF+PL  ++TS+ F K V   VV +N +
Sbjct:    1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ISSSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHNTA 139          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|301115442|ref|XP_002905450.1| (trafficking protein particle complex subunit 2-like protein [Phytophthora infestans T30-4] >gi|262110239|gb|EEY68291.1| trafficking protein particle complex subunit 2-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 120.553 bits (301), Expect = 1.462e-31
Identity = 61/151 (40.40%), Postives = 96/151 (63.58%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYN 151
            MIAC+AV+G  N  LY++ F  + +      L FH+IAH +LD  +E+ +             +S +DM+LG+L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+  F  +H LYV+ + +PF+PL  ++TS+ F K V   VV +N
Sbjct:    1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ITSSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVL-QDAPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|675172819|ref|XP_008895294.1| (hypothetical protein PPTG_04758 [Phytophthora parasitica INRA-310] >gi|566015675|gb|ETI38586.1| hypothetical protein F443_15736 [Phytophthora parasitica P1569] >gi|567953130|gb|ETK78789.1| hypothetical protein L915_15278 [Phytophthora parasitica] >gi|567981783|gb|ETL32219.1| hypothetical protein L916_15170 [Phytophthora parasitica] >gi|568011298|gb|ETL85476.1| hypothetical protein L917_14999 [Phytophthora parasitica] >gi|568041201|gb|ETM38620.1| hypothetical protein L914_15133 [Phytophthora parasitica] >gi|568104798|gb|ETN19443.1| hypothetical protein PPTG_04758 [Phytophthora parasitica INRA-310] >gi|570319409|gb|ETO67357.1| hypothetical protein F444_15714 [Phytophthora parasitica P1976] >gi|570943236|gb|ETP08493.1| hypothetical protein F441_15556 [Phytophthora parasitica CJ01A1] >gi|570974058|gb|ETP36533.1| hypothetical protein F442_15571 [Phytophthora parasitica P10297] >gi|970660416|gb|KUF97968.1| 3-hydroxyacyl-CoA dehydrogenase type-2 [Phytophthora nicotianae])

HSP 1 Score: 119.398 bits (298), Expect = 3.795e-31
Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYN 151
            MIAC+AV+G  N  LY++ F  + +      L FH+IAH +LD  +E+ +             +S +DM+LG L PIE++RVYGY T+T +KF+ +L ++ PVRE++L+  F  +H LYV+ + +PF+PL  ++TS+ F K V   VV +N
Sbjct:    1 MIACVAVIGAANSPLYIRTFGEEGED-----LGFHYIAHVSLDVIEEKLRGAG--------ITSSKDDMYLGSLGPIEDYRVYGYVTNTSVKFVVVL-QDTPVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHN 137          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|673038939|ref|XP_008873430.1| (hypothetical protein H310_09195 [Aphanomyces invadans] >gi|574470860|gb|ETV97869.1| hypothetical protein H310_09195 [Aphanomyces invadans])

HSP 1 Score: 118.627 bits (296), Expect = 6.884e-31
Identity = 59/153 (38.56%), Postives = 97/153 (63.40%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQS 153
            MIAC+A+VG  N  L+++ +    D      LSFH+IAH ALD  +ER K              S +DM+LG+L P+E+FRVYGY T+T +K +A++ ++ P++++D+++ F  +H LYV+ + +PF+ L  +ITS +F   V+  V+ +NQ+
Sbjct:    1 MIACVAIVGANNNPLFVRAYCEDDD------LSFHYIAHIALDIVEERVK-------------LSKDDMYLGFLGPVEDFRVYGYVTNTLVKLIAVV-QDAPLKDSDMRAFFADVHKLYVNAMSNPFAILGERITSAKFESHVKSLVLQHNQA 133          
BLAST of EWM21600.1 vs. NCBI_GenBank
Match: gi|669150132|ref|XP_008610628.1| (hypothetical protein SDRG_06616 [Saprolegnia diclina VS20] >gi|530737624|gb|EQC35866.1| hypothetical protein SDRG_06616 [Saprolegnia diclina VS20])

HSP 1 Score: 114.39 bits (285), Expect = 3.008e-29
Identity = 57/156 (36.54%), Postives = 97/156 (62.18%), Query Frame = 0
Query:    1 MIACIAVVGKKNELLYLKPFLAQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYNQSISS 156
            MI C+A+VG  N  L+++ F    D   D  LSFH+I H +LD  +E+ K+             S +DM+LG+L P+E+FRVYGY T+T +K L ++ ++ P++E++++ +F  LH LYV+ + +PF+ +  +ITSE+F   V   ++ +N +I +
Sbjct:    1 MICCVAIVGANNNPLFVRSF----DEDDD--LSFHYIVHISLDIIEEKVKT-------------SKDDMYLGFLGPVEDFRVYGYVTNTLVK-LVVVVQDAPIKESEMRVLFAELHKLYVNAMSNPFAIIGERITSEKFESKVYNLILQHNHTIEA 136          
The following BLAST results are available for this feature:
BLAST of EWM21600.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101855|gb|EWM21600.1|2.345e-137100.00trafficking protein particle complex subunit 2-lik... [more]
gi|553191954|ref|XP_005855489.1|5.574e-78100.00trafficking protein particle complex subunit 2-lik... [more]
gi|299470717|emb|CBN79763.1|3.193e-3846.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214701197|gb|OWZ13626.1|7.879e-3239.87Trafficking protein particle complex subunit [Phyt... [more]
gi|698793424|ref|XP_009829744.1|9.884e-3239.22hypothetical protein H257_06273 [Aphanomyces astac... [more]
gi|695463681|ref|XP_009538778.1|1.270e-3139.87hypothetical protein PHYSODRAFT_532679 [Phytophtho... [more]
gi|301115442|ref|XP_002905450.1|1.462e-3140.40trafficking protein particle complex subunit 2-lik... [more]
gi|675172819|ref|XP_008895294.1|3.795e-3140.40hypothetical protein PPTG_04758 [Phytophthora para... [more]
gi|673038939|ref|XP_008873430.1|6.884e-3138.56hypothetical protein H310_09195 [Aphanomyces invad... [more]
gi|669150132|ref|XP_008610628.1|3.008e-2936.54hypothetical protein SDRG_06616 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9051rna9051Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications