rna9049, rna9049 (mRNA) Nannochloropsis gaditana

Overview
Namerna9049
Unique Namerna9049
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length883
Alignment locationKK037251.1:199640..201058 -

Link to JBrowse

Properties
Property NameValue
Productlysyl-trna synthetase
Orig transcript idgnl|cribi|Naga_101909g1.1099.mrna
Orig protein idgnl|cribi|Naga_101909g1.1099
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:199640..201058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101909g1gene8776Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9049rna9049-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21654.1cds9019Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9049 ID=rna9049|Name=rna9049|organism=Nannochloropsis gaditana|type=mRNA|length=883bp
CGCGCCCGGTTCCTCCAACAAGCCGCGGGCGCTGCCGAAGGAGACGACGA
AGCCCAAGTGCATGACGAAGAATTTTGTGTCGCCCTCGAGCACGCCTTGC
CTCCTACGGGCGGCTGGGGCTGTGGTATCGACCGCTTGGCCATGTTCTTG
GCGGACAAGCACAACATCAAGGAGGTTCTGCTCTTCCCTGCCATGAAACC
CGACCTCGGGCCCACCACGCTCGCCCCGCCCAAGGCCTCGCCCTCCGCCC
CGACCTCCCTCCCCACCTCCGGTTCCCTTGTCTTCTCCGCCGTCGTTCCC
GCCACCACCCTCCCGCCGTGGGCGGGCACGGACGTGGGATCTGTGGACGG
CATGCAAGAGCTGTCCCGACACTTGAGTACGCAAAGCTTCTTGGGGGGGA
AAGAGGGGCCGTCGGCGTTGGACGCAGTGGTCTTTGGGGCCATGAAGAAA
GGCATGGAGGGAGGGCGGGCGGGAGGGCAAAGTGTGAGCTCTCAGGACCT
GCCCTCGGCCGTCCGTCGGTGGTACCAGACCCTCTCACAATTCGTGCCCG
CGGTGAGGGAAAGCTGGGAGTGAGAAAGGGAGGGAGGGTGGTAGGGAGGG
TAGAGGAGGAATGTGTCGAGGAGAATCGCCGCCTTCTGCGCGCATCGTCG
ACCGTCGATGTGGAAAGGGGGAGGGTGGAAAAAGCTTCCGGGGTGTGGGG
GGGGGGGGGAAGAACGCAAGGCGGGGGACGGATAAGAGGTAAGAGGTAGC
TGTATGGGGGCACAAGGAGGTTAAGCATGAAAATGTGTGCAGCAGGGCAG
ACATCCAGGCCTTGATCGGCCTCTACCATGGCATTAATCGATACATGGAG
CGAAAAGAATTTGTGGATGTCAGGCGACGGACA
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protein sequence of rna9049

>rna9049-protein ID=rna9049-protein|Name=rna9049|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPW
KRIPMVEGLEEKLKVKLPPLDTEAAREVLEGLCQKHDVACSAPRTVPRLL
DKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER
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mRNA from alignment at KK037251.1:199640..201058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9049 ID=rna9049|Name=rna9049|organism=Nannochloropsis gaditana|type=mRNA|length=1419bp|location=Sequence derived from alignment at KK037251.1:199640..201058- (Nannochloropsis gaditana)
CCTCGATCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCCCAG
CAACTCGTGATCGGGGGCCTGGACCGCGTCTATGAGATCGGGCGCCAGTT
CCGGAATGAGGGCATCGACCTAACGCACAATCCTGAGTTCACCACCTGCG
AATTTTACATGGTCAGCCTTTTGTCCTCCCTCCTTCCCGCCCTCCTTCTC
TCCTTTTCTCCCGACTTCCCTCCCTCCCTCATCTTCCCCCTGCTACTCCT
TGCCAGTCTGGCCTTGTTCCGAACCAATGATCATGTCCCACTCGAACGGG
TCTGACGAAACATTTCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTC
GCCACCTTTCCCCTCAGGCCTACGCGGACTACCACGACCTGATGGACCTG
ACGGAGACGCTCTTCTCCGAGATGGTCAAAGAGATCACTGGCGGTGAGTC
CCCCCCCCCTCCCCCCTCCCTCTCCCGTCCCCGGCATCCCCCCCCGGTGT
CCTTCCTCCACTCGGGCTGGTCGACACCTCCGTGCCTGGATCACACCCTC
CCTGAAAAACGTGCCCTCCCTCCCTGCCTCCCTCTCTGCCTTCCTTCCTT
CCTTCCTCAGGCTACGTCATCAAGTACCACCCCGAGGGTCCCGGGGGCTC
GGAGCTGACCATTGACTTCTCCCCCCCCTGGAAGCGGATCCCCATGGTGG
AAGGTCTCGAGGTGAGGGAGGGAGGGAAGGAGGGAGGGAGGGCAGATGGA
CGGGTCCGAGGTGCCCTCAAAGCCGTGTACCGGATGAACGGGGCCGCGAT
AAGGCAGGAGCATCCGAATGAACCGCTCTTCTCCCCCTCCCGGTGCCTGC
GTAGGAGAAGCTCAAGGTGAAACTGCCGCCCTTGGACACGGAGGCGGCCC
GCGAGGTCCTGGAAGGGCTCTGTCAGAAGCACGACGTGGCCTGCTCGGCG
CCGCGGACCGTCCCTCGGCTTCTCGACAAGCTGGTGGGGGAGTTCTTGGA
GGTGCGAAGGGAGGGTGGGGGGAGGGAGGGAAGGAGGGAGGGGGGAAGGG
AGAGGAAACGGTCGGAGGAGGAGAAATGATTTCGAGCGAGAAAGTGATCC
TTGACTCGGATGCAATCATGCAGAAACTTGAATGCTGACGGCCTTCCTTG
GCGGGCTCGTTTCCGTCACCTTGAGACATGGAAACGGCTTCCGTCACCTT
AAATTATGTATTCGCCTCCCTTTTACCTCTGCCGCCCGCGCTTTCCATTC
CTAAACTCTAGCCCCTCTGACCCCCTCGTGGGGTTGGCCCCTCTCCCTCC
CTCCCCCTCTCCTTTGGCAGGAGGACATTATCTCCCCCGCCTTTATCACT
GAGCACCCAGAGATCATGAGCCCCTTGGCCAAGTCCCACCGGACCAAGCC
CGGCTTGACCGAACGGTAA
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Coding sequence (CDS) from alignment at KK037251.1:199640..201058-

>rna9049 ID=rna9049|Name=rna9049|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at KK037251.1:199640..201058- (Nannochloropsis gaditana)
GAGGACATTATCTCCCCCGCCTTTATCACTGAGCACCCAGAGATCATGAG
CCCCTTGGCCAAGTCCCACCGGACCAAGCCCGGCTTGACCGAACGGTAAG
AGAAGCTCAAGGTGAAACTGCCGCCCTTGGACACGGAGGCGGCCCGCGAG
GTCCTGGAAGGGCTCTGTCAGAAGCACGACGTGGCCTGCTCGGCGCCGCG
GACCGTCCCTCGGCTTCTCGACAAGCTGGTGGGGGAGTTCTTGGAGGCTA
CGTCATCAAGTACCACCCCGAGGGTCCCGGGGGCTCGGAGCTGACCATTG
ACTTCTCCCCCCCCTGGAAGCGGATCCCCATGGTGGAAGGTCTCGAGGCC
TACGCGGACTACCACGACCTGATGGACCTGACGGAGACGCTCTTCTCCGA
GATGGTCAAAGAGATCACTGGCGATGGAGGACATTATCTCCCCCGCCTTT
ATCACTGAGCACCCAGAGATCATGAGCCCCTTGGCCAAGTCCCACCGGAC
CAAGCCCGGCTTGACCGAACGGTAAGAGAAGCTCAAGGTGAAACTGCCGC
CCTTGGACACGGAGGCGGCCCGCGAGGTCCTGGAAGGGCTCTGTCAGAAG
CACGACGTGGCCTGCTCGGCGCCGCGGACCGTCCCTCGGCTTCTCGACAA
GCTGGTGGGGGAGTTCTTGGAGGCTACGTCATCAAGTACCACCCCGAGGG
TCCCGGGGGCTCGGAGCTGACCATTGACTTCTCCCCCCCCTGGAAGCGGA
TCCCCATGGTGGAAGGTCTCGAGGCCTACGCGGACTACCACGACCTGATG
GACCTGACGGAGACGCTCTTCTCCGAGATGGTCAAAGAGATCACTGGCGA
TGGAGGACATTATCTCCCCCGCCTTTATCACTGAGCACCCAGAGATCATG
AGCCCCTTGGCCAAGTCCCACCGGACCAAGCCCGGCTTGACCGAACGGTA
AGAGAAGCTCAAGGTGAAACTGCCGCCCTTGGACACGGAGGCGGCCCGCG
AGGTCCTGGAAGGGCTCTGTCAGAAGCACGACGTGGCCTGCTCGGCGCCG
CGGACCGTCCCTCGGCTTCTCGACAAGCTGGTGGGGGAGTTCTTGGAGGC
TACGTCATCAAGTACCACCCCGAGGGTCCCGGGGGCTCGGAGCTGACCAT
TGACTTCTCCCCCCCCTGGAAGCGGATCCCCATGGTGGAAGGTCTCGAGG
CCTACGCGGACTACCACGACCTGATGGACCTGACGGAGACGCTCTTCTCC
GAGATGGTCAAAGAGATCACTGGCGATGGAGGACATTATCTCCCCCGCCT
TTATCACTGAGCACCCAGAGATCATGAGCCCCTTGGCCAAGTCCCACCGG
ACCAAGCCCGGCTTGACCGAACGGTAAGAGAAGCTCAAGGTGAAACTGCC
GCCCTTGGACACGGAGGCGGCCCGCGAGGTCCTGGAAGGGCTCTGTCAGA
AGCACGACGTGGCCTGCTCGGCGCCGCGGACCGTCCCTCGGCTTCTCGAC
AAGCTGGTGGGGGAGTTCTTGGAGGCTACGTCATCAAGTACCACCCCGAG
GGTCCCGGGGGCTCGGAGCTGACCATTGACTTCTCCCCCCCCTGGAAGCG
GATCCCCATGGTGGAAGGTCTCGAGGCCTACGCGGACTACCACGACCTGA
TGGACCTGACGGAGACGCTCTTCTCCGAGATGGTCAAAGAGATCACTGGC
GATGGAGGACATTATCTCCCCCGCCTTTATCACTGAGCACCCAGAGATCA
TGAGCCCCTTGGCCAAGTCCCACCGGACCAAGCCCGGCTTGACCGAACGG
TAAGAGAAGCTCAAGGTGAAACTGCCGCCCTTGGACACGGAGGCGGCCCG
CGAGGTCCTGGAAGGGCTCTGTCAGAAGCACGACGTGGCCTGCTCGGCGC
CGCGGACCGTCCCTCGGCTTCTCGACAAGCTGGTGGGGGAGTTCTTGGAG
GCTACGTCATCAAGTACCACCCCGAGGGTCCCGGGGGCTCGGAGCTGACC
ATTGACTTCTCCCCCCCCTGGAAGCGGATCCCCATGGTGGAAGGTCTCGA
GGCCTACGCGGACTACCACGACCTGATGGACCTGACGGAGACGCTCTTCT
CCGAGATGGTCAAAGAGATCACTGGCGATG
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Synonyms
Publications