EWM21654.1, cds9019 (CDS) Nannochloropsis gaditana

Overview
NameEWM21654.1
Unique Namecds9019
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:200898..200900 -
Alignment locationKK037251.1:200616..200691 -
Alignment locationKK037251.1:200348..200448 -
Alignment locationKK037251.1:200058..200204 -
Alignment locationKK037251.1:199640..199738 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21654.1
Productlysyl-trna synthetase
Orig transcript idgnl|cribi|Naga_101909g1.1099.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:200898..200900 -
KK037251.1supercontigKK037251.1:200616..200691 -
KK037251.1supercontigKK037251.1:200348..200448 -
KK037251.1supercontigKK037251.1:200058..200204 -
KK037251.1supercontigKK037251.1:199640..199738 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR018150aa-tRNA-synt_II-like
IPR004364aa-tRNA-synt_II
Homology
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|585101910|gb|EWM21654.1| (lysyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 286.96 bits (733), Expect = 4.399e-98
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPPLDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPPLDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER
Sbjct:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPPLDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|1174749488|gb|OQV17721.1| (Lysine--tRNA ligase [Hypsibius dujardini])

HSP 1 Score: 197.978 bits (502), Expect = 9.442e-58
Identity = 96/144 (66.67%), Postives = 112/144 (77.78%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPPLD---TEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADY DLM LTE + S MVK ITGGY IKYHP+GP G EL IDF+PPW+R+PM+  LE K+ VKLP  D   TE AR+ L+ L +KHDV C APRTV RLLDKLVG+F+E D I+P F+ +HPEIMSPLAK+HR  PGLTER
Sbjct:  326 MAYADYKDLMTLTEQMISGMVKYITGGYKIKYHPKGPEGEELEIDFTPPWRRVPMMAELERKVGVKLPAADQLHTEQARKALDDLAKKHDVECPAPRTVARLLDKLVGDFVEIDCINPTFLCDHPEIMSPLAKTHRETPGLTER 469          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|668466690|gb|KFB53647.1| (AGAP000325-PA-like protein [Anopheles sinensis])

HSP 1 Score: 194.126 bits (492), Expect = 8.373e-57
Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPP---LDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADYHDLMD+TE L S MV  I G Y IKYHP GP G E  IDF+PP++R+ M+E LE+ LKVK P    L T AAR+ L+ LC +H V C APRT  RLLDKL G+FLEE  I+P FI +HP+IMSPLAK HR++PGLTER
Sbjct:  292 MAYADYHDLMDITERLLSSMVHAIHGTYQIKYHPNGPQGKEYVIDFTPPFRRLSMIESLEDILKVKFPAATELHTNAARQFLDDLCVQHQVDCRAPRTTSRLLDKLTGQFLEEQCINPTFICDHPQIMSPLAKYHRSQPGLTER 435          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|195171943|ref|XP_002026761.1| (GL27002 [Drosophila persimilis] >gi|194111700|gb|EDW33743.1| GL27002 [Drosophila persimilis])

HSP 1 Score: 190.274 bits (482), Expect = 1.993e-55
Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPP---LDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADY D+MD+TE L S MVK I G Y IKYHPEGP G E  +DF+PP+KR+ M++ LEEKLKV+ P     +T A  + L  LC KH V C APRT  RLLDKLVGEF+EE+ I+P FI EHP+IMSPLAK HR+ PGLTER
Sbjct:  262 MAYADYADVMDITEQLISGMVKSIRGSYKIKYHPEGPEGPEQELDFTPPFKRVSMIKTLEEKLKVQFPSAETFNTRATTDFLSQLCVKHQVECPAPRTTARLLDKLVGEFIEEECINPTFICEHPQIMSPLAKYHRSAPGLTER 405          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|983146457|gb|KWU44425.1| (lysyl-tRNA synthetase [Rhodotorula sp. JG-1b])

HSP 1 Score: 192.2 bits (487), Expect = 2.060e-55
Identity = 92/144 (63.89%), Postives = 107/144 (74.31%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPP---LDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYAD HDLMDLTE+L S +VK ITGGY IKYHPEG  G EL +DF+ PWKR  M+E LE++L VK PP   LDT    + L  LC KH+V CS PRT  RLLDKLVGEF+E   ISP+FI  HP++MSPLAK HR++PGL ER
Sbjct:  352 MAYADMHDLMDLTESLLSGLVKHITGGYKIKYHPEGKEGPELELDFTTPWKRFDMIEELEKQLNVKFPPGNELDTPETNKFLRDLCTKHNVDCSEPRTNARLLDKLVGEFIENQCISPSFIVGHPQVMSPLAKHHRSRPGLCER 495          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|146189668|emb|CAM92102.1| (hypothetical protein, partial [Eristalis tenax])

HSP 1 Score: 182.185 bits (461), Expect = 2.577e-55
Identity = 87/144 (60.42%), Postives = 106/144 (73.61%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLP---PLDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADY DL+D+TE + S MVK I G Y IKYHP+GP G E  IDF+PP++R+ M++ LEEKL VK P    L+T+   + L  LC KH V C +PRT  RLLDKLVGEF+EE  I+P FI EHP++MSPLAK HR +PGLTER
Sbjct:   47 MAYADYSDLIDMTEKMISGMVKAIHGSYKIKYHPDGPEGEEQEIDFTPPFRRVSMIKTLEEKLNVKFPCPTTLNTKETADFLSQLCIKHQVECPSPRTAARLLDKLVGEFIEETCINPTFICEHPQVMSPLAKYHRKEPGLTER 190          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|524911670|ref|XP_005110695.1| (PREDICTED: lysine--tRNA ligase-like [Aplysia californica])

HSP 1 Score: 191.045 bits (484), Expect = 3.866e-55
Identity = 93/144 (64.58%), Postives = 110/144 (76.39%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPP---LDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADY DLM + ETL S MVK++TGGY I YHPEGP G    +DF+PP+KRIPM+  LE+++ VK P    L TE+AR+ L+ L  KH V CS PRT  RLLDK+VG+F+EE IISPAFITEHPE+MSPLAK HR  PGLTER
Sbjct:  335 MAYADYQDLMHMAETLLSGMVKQLTGGYKITYHPEGPEGEAFEVDFTPPFKRIPMIATLEKEMGVKFPAATELHTESARKFLDELAVKHGVECSPPRTTARLLDKMVGDFIEEKIISPAFITEHPEVMSPLAKWHRDCPGLTER 478          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|405966314|gb|EKC31614.1| (Lysyl-tRNA synthetase [Crassostrea gigas])

HSP 1 Score: 189.889 bits (481), Expect = 6.168e-55
Identity = 88/144 (61.11%), Postives = 113/144 (78.47%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPP---LDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADY+DLM +TETL S MVK I GGY +KYHPEGP G E  +D++PP+KR+ M++GLEE+L VK P     ++E  R+ L+GLC KH+V C APRT  RLLDKLVGEF+E + ++P FI +HP++MSPLAK HR++PGLTER
Sbjct:  325 MAYADYNDLMKITETLLSGMVKHIHGGYKVKYHPEGPEGPEWEVDYTPPFKRVGMLKGLEERLAVKFPDSKEFESENTRKFLDGLCVKHEVECPAPRTAARLLDKLVGEFIESECVNPTFIIDHPQVMSPLAKWHRSEPGLTER 468          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|762126989|ref|XP_011446565.1| (PREDICTED: lysine--tRNA ligase isoform X2 [Crassostrea gigas])

HSP 1 Score: 189.889 bits (481), Expect = 6.587e-55
Identity = 88/144 (61.11%), Postives = 113/144 (78.47%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPP---LDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADY+DLM +TETL S MVK I GGY +KYHPEGP G E  +D++PP+KR+ M++GLEE+L VK P     ++E  R+ L+GLC KH+V C APRT  RLLDKLVGEF+E + ++P FI +HP++MSPLAK HR++PGLTER
Sbjct:  325 MAYADYNDLMKITETLLSGMVKHIHGGYKVKYHPEGPEGPEWEVDYTPPFKRVGMLKGLEERLAVKFPDSKEFESENTRKFLDGLCVKHEVECPAPRTAARLLDKLVGEFIESECVNPTFIIDHPQVMSPLAKWHRSEPGLTER 468          
BLAST of EWM21654.1 vs. NCBI_GenBank
Match: gi|198467359|ref|XP_001354371.2| (uncharacterized protein Dpse_GA11433, isoform A [Drosophila pseudoobscura pseudoobscura] >gi|198149207|gb|EAL31424.2| uncharacterized protein Dpse_GA11433, isoform A [Drosophila pseudoobscura pseudoobscura])

HSP 1 Score: 189.889 bits (481), Expect = 7.749e-55
Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = 0
Query:    1 MAYADYHDLMDLTETLFSEMVKEITGGYVIKYHPEGPGGSELTIDFSPPWKRIPMVEGLEEKLKVKLPP---LDTEAAREVLEGLCQKHDVACSAPRTVPRLLDKLVGEFLEEDIISPAFITEHPEIMSPLAKSHRTKPGLTER 141
            MAYADY D+MD+TE L S MVK I G Y IKYHPEGP G E  +DF+PP+KR+ M++ LEEKLKV+ P     +T A  + L  LC KH V C APRT  RLLDKLVGEF+EE+ I+P FI EHP+IMSPLAK HR+ PGLTER
Sbjct:  328 MAYADYADVMDITEQLISGMVKSIRGSYKIKYHPEGPEGPEQELDFTPPFKRVSMIKTLEEKLKVQFPSAETFNTRATTDFLSQLCVKHQVECPAPRTTARLLDKLVGEFIEEECINPTFICEHPQIMSPLAKYHRSAPGLTER 471          
The following BLAST results are available for this feature:
BLAST of EWM21654.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101910|gb|EWM21654.1|4.399e-98100.00lysyl-trna synthetase [Nannochloropsis gaditana][more]
gi|1174749488|gb|OQV17721.1|9.442e-5866.67Lysine--tRNA ligase [Hypsibius dujardini][more]
gi|668466690|gb|KFB53647.1|8.373e-5763.19AGAP000325-PA-like protein [Anopheles sinensis][more]
gi|195171943|ref|XP_002026761.1|1.993e-5563.19GL27002 [Drosophila persimilis] >gi|194111700|gb|E... [more]
gi|983146457|gb|KWU44425.1|2.060e-5563.89lysyl-tRNA synthetase [Rhodotorula sp. JG-1b][more]
gi|146189668|emb|CAM92102.1|2.577e-5560.42hypothetical protein, partial [Eristalis tenax][more]
gi|524911670|ref|XP_005110695.1|3.866e-5564.58PREDICTED: lysine--tRNA ligase-like [Aplysia calif... [more]
gi|405966314|gb|EKC31614.1|6.168e-5561.11Lysyl-tRNA synthetase [Crassostrea gigas][more]
gi|762126989|ref|XP_011446565.1|6.587e-5561.11PREDICTED: lysine--tRNA ligase isoform X2 [Crassos... [more]
gi|198467359|ref|XP_001354371.2|7.749e-5563.19uncharacterized protein Dpse_GA11433, isoform A [D... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9049rna9049Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications