rna9046, rna9046 (mRNA) Nannochloropsis gaditana

Overview
Namerna9046
Unique Namerna9046
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2573
Alignment locationKK037251.1:194917..196441 -

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Properties
Property NameValue
ProductLeucine-rich repeat, cysteine-containing subtype
Orig transcript idgnl|cribi|Naga_100738g1.7407.mrna
Orig protein idgnl|cribi|Naga_100738g1.7407
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:194917..196441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100738g1gene8773Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21657.1cds9016Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9046rna9046-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9046 ID=rna9046|Name=rna9046|organism=Nannochloropsis gaditana|type=mRNA|length=2573bp
GCAAGCATTACGCTCCCACTGACGCATTCCATCCCACCTTCAACTTCTAG
ACTTCTCACCGATTACCTCACCGCATGGACACACCACCGGGACAGGATGG
CCACGCCACAGCAAGCCGTGTCTTATGGGGCGTCTCGCACGGTGGTCGCA
CCTGCAAAGCCCGGTCGCCGCAGCCAGGGCAGAATGGCAAGCCCAAGTCC
TCGTCTTCCTCCTTGCCGGCAGCAGGCCAGGACACTCTTAGGCACATTTC
TTGCCATGTCCCTCCTCGTCCTTCCGGCAACAAGCTCGGCCTTCCTCATG
CCCTACACGAGCAGCAGAAGGACTTCTCCTTTGCCTTTTTCCCGCAGCAC
CCTGTCGTCCCAGACTTATCTTTCTTTTCCCCACGTGCTCCGGGCATCAC
GGCTGTCTACCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCT
TTCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCTCCCTCCTCTTT
CTCATCCCCCTCCTTCCCTTCTCCACACACCCGTATATTGGAGCCCTCCC
CTCCGGACGTGATCGATGCTACTTTCCCTTTCCGGCTGGTCCTTCGTCGA
CTCAAAAACGCCGTCGGCCACGCTGTCACCGTGGGACTCATGCTCGTCAC
CAGCTCCTTCGGCGCCTTCTCCCTCCCATTCCCCGCCGCGGCCATCCCTC
CCCTCATGTCCTCGGTGCCCGTGCCAAGCACCAGCATGCCCGCCACGGTG
GGCTACCGGGATGCTTCCCTCTTGCCGTACGAGCTGACCATGGGGGAGAC
GTCCCGAATAGGGATCTTCCAGGAAGCCACGCCCAGCGTGGCCAACATCA
ACACCTTTGTGGAACAGCGGGATGCCTTTTCGATGAACGTGATGGAGGTC
CCGGCTGGGACAGGCTCCGGCTTCGTGTGGAACGACAAAGGCTACATCGT
GACGAACTACCACGTGATCCGATCCGCCGAGTCCGCCCAAGTCACCCTCA
CGGACCGGGACGGGCATCAATCGACCTACAAAGCCCTCTTGCGCGGCTTC
GACCCCGACAAGGACGTGGCTGTCCTCCGTGTGGAAGCCCCCCCCGCCTC
CCTCCGGCCCATCCCCGTCGGCTCCTCCTCCACCTTGAAGGTCGGTCAGG
CGGCCCTGGCGATTGGCAACCCCTTTGGCCTCGACCACACCTTAACTTCC
GGGGTCATCTCGGGGCTGGGCCGGGAGGTGCGCTCGCCGTCGGGGCGGCC
CATCAGTAACGTGATTCAGACGGATGCGGCCATCAATCCAGGAAACTCGG
GCGGGCCCCTCTTGGACTCCGCCGGGCGCTTGGTGGGGATGAACACGGCC
ATCTACTCCCCCTCCGGGGCCTCCGCGGGCATCGGCTTCGCCATTCCGGT
CGACACGCTGAAATTTGTGGTGGAAACCATCATCAAGGACGGGAAGGTGG
TCAGACCCTTGATTGGGATAACGTACTTGGAGAGCAGCCAGGCCAAAGCC
TTGGGTAGGAAGGGGGGGAGGGGGAGGGCGGGAGGGAGGGCGGGGTCAGC
ACGTGCTAGGGCTCTGACGAGTCGTCGACTTTTCTCGTTGCTGTGAAGGC
ACCGACATTCACCGTGTCACAATCGAGCCCAGAGGACGGGCGAGACCTCG
TTCAATGGAAAGCCTCCCCCATGGAAAGGCCTGTCCGCATGTGGTCCGGA
TACTGGGCGGCTTTGCCCCATTCCAACATCTTTCCCTTCCCACCCCGTCT
CGCAGGCATCGACAAGGGCGTCCTTGTGCTGGACGTGCCTCGGCAGTCTC
CCGGGGCCTTGGCCGGGATGCGGGGCACGTCCCGGAGCCGCCTGGGCCTC
ATTCAACTCGGGGACATCATAGTCCAGATCAACAACGACGACATCAACAA
CGAAGCGGACTTGTTCAAGACCTTGGAGAAATACCGACCGGGGGACAAGG
TCAAAGTGGTGGTGCGACGCGTCTTGGCCGTGAACGATGGGGGGGGGGGG
GGGAAAGGGAAGGCCTGCTGAATGCGGAGACGGAGAAAGTGATCTTGAAC
GTGAAGCTCCGAGGCTCGGACCAGGCCATGGCCATCGGACGGTAGACCCA
GAGGACAAGGAGGAAAGCACGGGAAGGGTGAGATAGGGGCATGGGGGAAG
GTAGGGGATGTGAGAAGGGAGGGGGGTGACGGACGTGGCAGGGAGCACTT
GGGGTGGGGCAAGTGAGGGAGGGGGGGGGAGGGATGTGTGAATCCCATCG
TCTTTTGGCATAGCATGATGGCATTTTGGAAGAACCAGGGGGTCGTTGTA
TCGAGAGGAACGTGAACGGGGCCTCAGGGCGTGGGTTATCCCCCGCATCT
CCTCCAATCATTTCCTGACATGCGCCGTTTTATTTTTCCTGTGGCATAAT
CTTCTATTCTTTCCTGTGGCACATATTTTTCCCCCCTCTTTCGTGTCAGC
GACGAAGAGTTTGGGACGCGTGTCAAATACACTATTATTTGAATGGCTAT
AAAGTGCTGTCGGATGACAACATTCCTGTCCCTGCGGCAGGTATCCTCTG
CCCTCGCGTCTCCTCCTTCTCCC
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protein sequence of rna9046

>rna9046-protein ID=rna9046-protein|Name=rna9046|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MVWGGGEEVHDGEEEEEEEEEGEEEEEEEEEELTRGRHLFDLEGGEEEEE
EDDEVREVGKREREEEQEREEEEEGEEEEREGAHAVGDKTRGPRGDTSSN
QQGPNNGYSNSPRFSNGCNGREKPSSPGRPKRRHRGPTDRSVLLLAKTLG
RNLQVLDLEGCEGVSNQGLLSLFLACHRLQRLVLNGLPRVDDVAVQALLP
RRNRHLRLPCLVDLNLNVCRGVSLHAVQELKRQRPDILRVTYRREVALRG
PTSF
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mRNA from alignment at KK037251.1:194917..196441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9046 ID=rna9046|Name=rna9046|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp|location=Sequence derived from alignment at KK037251.1:194917..196441- (Nannochloropsis gaditana)
ATGGTTTGGGGGGGGGGGGAGGAAGTGCACGATGGAGAGGAGGAGGAGGA
GGAGGAAGAGGAGGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGCTCA
CGAGGGGTCGCCACTTATTTGATTTGGAAGGTGGTGAAGAGGAAGAGGAG
GAGGACGACGAGGTCAGGGAGGTTGGTAAGAGGGAAAGGGAGGAGGAGCA
AGAAAGAGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGGGAAGGGGCCC
ATGCCGTCGGTGATAAAACTCGAGGACCACGGGGCGACACTTCCAGCAAC
CAGCAAGGGCCGAATAATGGATATTCAAACAGCCCACGTTTCAGTAACGG
ATGTAACGGTCGGGAAAAGCCGAGCAGCCCCGGGCGGCCCAAAAGGAGGC
ACCGAGGGCCCACGGACCGCAGCGTCCTCCTTCTGGCCAAGACTTTGGGA
CGAAATCTGCAAGTTTTGGACCTGGAGGGCTGCGAGGGCGTGAGCAATCA
GGGCCTTCTCTCCCTTTTCCTCGCCTGCCACCGTCTTCAACGGCTGGTCT
TGAACGGACTGCCGCGGGTGGATGACGTGGCCGTCCAGGCTCTGCTGCCG
CGTCGGAACCGCCATTTGAGGTTGCCTTGCCTGGTGGATTTAAATTTAAA
CGTGTGCCGAGGCGTGTCCTTGCATGCGGTGCAGGAACTCAAGCGCCAAC
GCCCGGACATTCTTCGGGTTACCTACCGAAGGGAAGTCGCCCTCCGAGGC
CCAACGTCTTTTTGAAAACTTGAATATTTCTCCAAGTTGTCCAGCGGTTG
CGGACTGCGTACCGGCAGAATAGCTAGGAGAGGACTGGTAAAGAGATCCT
CCGGGAATAATTGTCATTCAGAAAGGGATGGCTGTGAAACTAGGTGCCCG
GGGGGGAGGTCATATGGTATGGCGACAGGTAGGAGTGGAGGGGGAAAACC
CTTTTCAAACGAAAATGCAGGGTCGACTTATGGGCTGGAAGGAGGAGAGT
GGATCGATGGTTGGAGGCACAGACTAGGTAAAGGTAGTCAATGGGTAAAA
TAAAGGGATGCGGGAGGCGTTGAGGGATAAAGGAGGGAGGGCAGGGCGAG
ATAGTAACAAGGGTGCCGGGCAGACTGTTTGCGGTGGAAAGTAGAGGCGA
TCAACAATATAGGCGAGAGTAGAGCACATAGAGAAGGAAATAGTTTGGGA
GGAAAAGGGCGCAAATGGGCGGCCAGGGTAGAGTAGATAGGCGGGAGAAG
GAGGAGACGCGAGGGCAGAGGATACCTGCCGCAGGGACAGGAATGTTGTC
ATCCGACAGCACTTTATAGCCATTCAAATAATAGTGTATTTGACACGCGT
CCCAAACTCTTCGTCGCTGACACGAAAGAGGGGGGAAAAATATGTGCCAC
AGGAAAGAATAGAAGATTATGCCACAGGAAAAATAAAACGGCGCATGTCA
GGAAATGATTGGAGGAGATGCGGGGGATAACCCACGCCCTGAGGCCCCGT
TCACGTTCCTCTCGATACAACGACC
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Coding sequence (CDS) from alignment at KK037251.1:194917..196441-

>rna9046 ID=rna9046|Name=rna9046|organism=Nannochloropsis gaditana|type=CDS|length=765bp|location=Sequence derived from alignment at KK037251.1:194917..196441- (Nannochloropsis gaditana)
ATGGTTTGGGGGGGGGGGGAGGAAGTGCACGATGGAGAGGAGGAGGAGGA
GGAGGAAGAGGAGGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGCTCA
CGAGGGGTCGCCACTTATTTGATTTGGAAGGTGGTGAAGAGGAAGAGGAG
GAGGACGACGAGGTCAGGGAGGTTGGTAAGAGGGAAAGGGAGGAGGAGCA
AGAAAGAGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGGGAAGGGGCCC
ATGCCGTCGGTGATAAAACTCGAGGACCACGGGGCGACACTTCCAGCAAC
CAGCAAGGGCCGAATAATGGATATTCAAACAGCCCACGTTTCAGTAACGG
ATGTAACGGTCGGGAAAAGCCGAGCAGCCCCGGGCGGCCCAAAAGGAGGC
ACCGAGGGCCCACGGACCGCAGCGTCCTCCTTCTGGCCAAGACTTTGGGA
CGAAATCTGCAAGTTTTGGACCTGGAGGGCTGCGAGGGCGTGAGCAATCA
GGGCCTTCTCTCCCTTTTCCTCGCCTGCCACCGTCTTCAACGGCTGGTCT
TGAACGGACTGCCGCGGGTGGATGACGTGGCCGTCCAGGCTCTGCTGCCG
CGTCGGAACCGCCATTTGAGGTTGCCTTGCCTGGTGGATTTAAATTTAAA
CGTGTGCCGAGGCGTGTCCTTGCATGCGGTGCAGGAACTCAAGCGCCAAC
GCCCGGACATTCTTCGGGTTACCTACCGAAGGGAAGTCGCCCTCCGAGGC
CCAACGTCTTTTTGA
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Synonyms
Publications