rna9045, rna9045 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9045
Unique Name	rna9045
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1067
Alignment location	KK037251.1:192163..195199 +

Link to JBrowse

Properties


Property Name	Value
Product	serine-type peptidase
Orig transcript id	gnl\|cribi\|Naga_100738g2.7409.mrna
Orig protein id	gnl\|cribi\|Naga_100738g2.7409
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:192163..195199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100738g2	gene8772	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9045	rna9045-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21659.1	cds9015	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:192163..195199+
coding sequence from alignment at KK037251.1:192163..195199+

mRNA sequence

>rna9045 ID=rna9045|Name=rna9045|organism=Nannochloropsis gaditana|type=mRNA|length=1067bp
GGAGGGGAGGGAAAAGTGGTGCCTAAGGTTGGTGGAGTGATAGGGGAAGT
CGACAAGGAGGCAGGAACAAAGGAGGAGGTGGAGGAAAACGAAGGCGCCG
TGACGGGGAATAAGGAGGAGGAGGAGGAGGGGAGGGGAAGGGAGGGAGGA
AGGGAGGAGGATGGAAGCCAGGGCGAGGTGGGAGGGGCGGTGGAAGACGC
CGTGCAGAAAGGCAAGGAGGAGGAGAGGGGGGAAGGGAAGGAGGGTACGA
ACAGTGAGACTGATCAAGCCGAGGCTACGGGCAAAGAGACAGGGAAAGAG
GAGGGCGGGGGGGAGTGCGAAGGGGAGGGAGGAGGGGAGGGCGGGAGAGG
GGCCGACAAGAAGGCCAGCATGGCCCGCAAGGCCAAGGTATTGCCGACCC
TACGCATCACTGTCAGCGCTCCCGCGGATGACGGCGGGCAGCCCATTACC
GGATACATGCTCACGGCCAAACCGGGGAATCTTAAGGTAGAGTCAACCGA
GCCGATCCTCCTCCTGCCGGGCTTGACCCCCGGCACCTCCTATAGCCTGA
GCGTGGCCGCCAGGAACGCAGCAGGGTACGGGCCTGCTTCCCGTCCCATG
GTGGTGGACGTGATGCCCTGATGAGGTCGGAGGATGGGGCGGGAGGGAGT
GCGGGGTGTGGGCTGGCGGGAGGGCGGGGGGGAGGGCCCGAAAGGGGAAA
GGGAGCCAGCCGCTTGGGCAGCAGGACGGCGATGAGGACGGCAATGGGGA
GATTCTTTTTACGAACGTGCGTGATTGTATGTCTCAATTTTGATGAAAAC
TCATTTATTTAAAGTGTTAGATAAGAGTTAAGGGAACTGTATCGACAACC
GCAGTTTTATAAAATGCGAACACTCATGGCAGAGTAAGAGCGAGATAAGA
GTTGTATGGTAAAGACTATGAGAGACAGAGAGTGCAAAAGAGAAAGTGAG
AGTAAGAAAAGAGCGAGTGAAGTTTAAAAAAAAAAAAACAGAAAAAATTG
ACGGCTCGAGATGCTGAGTCACATCAAGAATTATTTGTCGAATGAACATC
CATTAGGAAATGATTTT

protein sequence of rna9045

>rna9045-protein ID=rna9045-protein|Name=rna9045|organism=Nannochloropsis gaditana|type=polypeptide|length=499bp
MATPQQAVSYGASRTVVAPAKPGRRSQGRMASPSPRLPPCRQQARTLLGT
FLAMSLLVLPATSSAFLMPYTSSRRTSPLPFSRSTLSSQTYLSFPHVLRA
SRLSTSSPSSSSSSSSSSFSSSSSSSSSSSSPSSFSSPSFPSPHTRILEP
SPPDVIDATFPFRLVLRRLKNAVGHAVTVGLMLVTSSFGAFSLPFPAAAI
PPLMSSVPVPSTSMPATVGYRDASLLPYELTMGETSRIGIFQEATPSVAN
INTFVEQRDAFSMNVMEVPAGTGSGFVWNDKGYIVTNYHVIRSAESAQVT
LTDRDGHQSTYKALLRGFDPDKDVAVLRVEAPPASLRPIPVGSSSTLKVG
QAALAIGNPFGLDHTLTSGVISGLGREVRSPSGRPISNVIQTDAAINPGN
SGGPLLDSAGRLVGMNTAIYSPSGASAGIGFAIPVDTLKFVVETIIKDGK
VVRPLIGITYLESSQAKALGRKGGRGRAGGRAGSARARALTSRRLFSLL

mRNA from alignment at KK037251.1:192163..195199+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9045 ID=rna9045|Name=rna9045|organism=Nannochloropsis gaditana|type=mRNA|length=3037bp|location=Sequence derived from alignment at KK037251.1:192163..195199+ (Nannochloropsis gaditana)
GCAAGCATTACGCTCCCACTGACGCATTCCATCCCACCTTCAACTTCTAG
ACTTCTCACCGATTACCTCACCGCATGGACACACCACCGGGACAGGATGG
CCACGCCACAGCAAGCCGTGTCTTATGGGGCGTCTCGCACGGTGGTCGCA
CCTGCAAAGCCCGGTCGCCGCAGCCAGGGCAGAATGGCAAGCCCaagtcc
tcgtcttcctccttgccggcAGCAGGCCAGGACACTCTTAGGCACATTTC
TTGCCAtgtccctcctcgtccttccgGCAACAAGCTCGGCCTTCCTCATG
CCCTACACGAGCAGCAGAAGGACTtctcctttgcctttttcCCGCAGCAC
CCTGTCGTCCCAGACTtatctttcttttccccacGTGCTCCGGGCATCAC
GGctgtctacctcctccccctcctcctcctcctcctcctcctcctcctct
ttctcctcttcctcctcttcctcctcttcctcctcctctccctcctcttt
ctcatccccctccttcccttctccacaCACCCGTATATTggagccctccc
ctccggaCGTGATCGATGCTACTTTCCCTTTCCGGCTGGTCCTTCGTCGA
CTCAAAAACGCCGTCGGCCACGCTGTCACCGTGGGACTCATGCTCGTCAC
CAGCTCCTtcggcgccttctccctcccattccccgccgcggccatccctc
ccctcatgTCCTCGGTGCCCGTGCCAAGCACCAGCATGCCCGCCACGGTG
GGCTACCGGGATGCTTCCCTCTTGCCGTACGAGCTGACCATGGGGGAGAC
GTCCCGAATAGGGATCTTCCAGGAAGCCACGCCCAGCGTGGCCAACATCA
ACACCTTTGTGGAACAGCGGGATGCCTTTTCGATGAACGTGATGGAGGTC
CCGGCTGGGACAGGCTCCGGCTTCGTGTGGAACGACAAAGggtagggcgg
gagggagagcggaagggagggcgggcgagagggagggaaggagggtaacC
CTCATCTGCCGAGGTATTTCACcagctcctttcccacctccccctccctc
tctccctctttccccccccggatAGCTACATCGTGACGAACTACCACGTG
ATCCGATCCGCCGAGTCCGCCCAAGTCACCCTCACGGACCGGGACGGGCA
TCAATCGACCTACAAAGCCCTCTTGCGCGGCTTCGACCCCGACAAGGACG
TGGCTGTCCTCCGTGTGgaagccccccccgcctccctccggcccatcccc
gtcggctcctcctccaccttgaaGGTCGGTCAGGCGGCCCTGGCGATTGG
CAACCCCTTTGGCCTCGACCACACCTTAACTTCCGGGGTCATCTCGGGGC
TGGGCCGGGAGGTGCGCTCGCCGTCGGGGCGGCCCATCAGTAACGTGATT
CAGACGGATGCGGCCATCAATCCAGGTGGGCGGAGGCAGTAAGGGTTCGG
AGGGATTTATTCGGGCTTTGTCGGGTGGGATAGGGGGGTCGCGTCCATCG
ttggcggggggcgggggggagataGCCCGTCGTGCTTCCCTTGTATTCTC
TTGAAGACATTCAGGCACTGGCGGAGGATAAAGAGGGCGTGAAAGAGCGA
TTTGAGGCGGGAGGCTGGCCAGCCTGACCTCCACGCTTATACCCGCCTGG
GAGGCACTGGGCCCCCGTCAAGCTTCTTTGAACCGTTTTGCCTCGGACAA
TAAAATGACCAGCGCACCGCATTCAacgtccaccctcccccgctccctgg
CACAGGAAACTCGGGCGGGCCCCTCTTGGACTCCGCCGGGCGCTTGGTGG
GGATGAACACGGCCATCTACTCCCCCTCCGGGGCCTCCGCGGGCATCGGC
TTCGCCATTCCGGTCGACACGCTGAAATTTGTGGTGGAAACCATCatcaa
ggacgggaaggtggtCAGACCCTTGATTGGGATAACGTACTTGGAGAGCA
GCCAGGCCAAAGCCTtgggtaggaagggggggagggggagggcgggaggg
agggcggggtcagCACGTGCTAGGGCTCTGACGAGTCGTCGACTTTTCTC
GTTGCTGTGAAGGCACCGACATTCACCGTGTCACAATCGAGCCCAGAGGA
CGGGCGAGACCTCGTTCAATGGAAAGCCTCCCCCATGGAAAGGCCTGTCC
GCATGTGGTCCGGATACTGGGCGGCTTTGCCCCATTCCAAcatctttccc
ttcccaccccgtCTCGCAGGCATCGACAAGGGCGTCCTTGTGCTGGACGT
GCCTCGGCAGTCTCCCGGGGCCTTGGCCGGGATGCGGGGCACGTCCCGGA
GCCGCCTGGGCCTCATTCAACTCGGGGACATCATAGTCCAGATCAACAAC
GACGACATCAACAACGAAGCGGACTTGTTCAAGACCTTGGAGAAATACCG
ACCGGGGGACAAGGTCAAAGTGGTGGTGCGACGCGTCTTGGCCGTGAacg
atgggggggggggggggaaagggaaggcctGCTGAATGCGGAGACGGAGA
AAGTGATCTTGAACGTGAAGCTCCGAGGCTCGGACCAGGCCATGGCCATC
GGACGGTAGACccagaggacaaggaggaaagcacgGGAAGGGTGAGATAG
GGGCATGGGGGAAGGTAGGGGatgtgagaagggaggggggtgacGGACGT
GGCAGGGAGCACTTGGGGTGGggcaagtgagggagggggggggagggatg
tgtGAATCCCATCGTCTTTTGGCATAGCATGATGGCATTTTGGAAGAACC
AGGGGGTCGTTGTATCGAGAGGAACGTGAACGGGGCCTCAGGGCGTGGGT
TATCccccgcatctcctccaatcATTTCCTGACATGCGCCGTTTTATTTT
TCCTGTGGCATAATCTTCTATTCTTTCCTGTGGCACAtatttttcccccc
tctttcgtgTCAGCGACGAAGAGTTTGGGACGCGTGTCAAATACACTATT
ATTTGAATGGCTATAAAGTGCTGTCGGATGACAACATTCCTGTCCCTGCG
GCAGGTATCCTCTGCCctcgcgtctcctccttctccc

Coding sequence (CDS) from alignment at KK037251.1:192163..195199+

>rna9045 ID=rna9045|Name=rna9045|organism=Nannochloropsis gaditana|type=CDS|length=4500bp|location=Sequence derived from alignment at KK037251.1:192163..195199+ (Nannochloropsis gaditana)
ATGGCCACGCCACAGCAAGCCGTGTCTTATGGGGCGTCTCGCACGGTGGT
CGCACCTGCAAAGCCCGGTCGCCGCAGCCAGGGCAGAATGGCAAGCCCaa
gtcctcgtcttcctccttgccggcAGCAGGCCAGGACACTCTTAGGCACA
TTTCTTGCCAtgtccctcctcgtccttccgGCAACAAGCTCGGCCTTCCT
CATGCCCTACACGAGCAGCAGAAGGACTtctcctttgcctttttcCCGCA
GCACCCTGTCGTCCCAGACTtatctttcttttccccacGTGCTCCGGGCA
TCACGGctgtctacctcctccccctcctcctcctcctcctcctcctcctc
ctctttctcctcttcctcctcttcctcctcttcctcctcctctccctcct
ctttctcatccccctccttcccttctccacaCACCCGTATATTggagccc
tcccctccggaCGTGATCGATGCTACTTTCCCTTTCCGGCTGGTCCTTCG
TCGACTCAAAAACGCCGTCGGCCACGCTGTCACCGTGGGACTCATGCTCG
TCACCAGCTCCTtcggcgccttctccctcccattccccgccgcggccatc
cctcccctcatgTCCTCGGTGCCCGTGCCAAGCACCAGCATGCCCGCCAC
GGTGGGCTACCGGGATGCTTCCCTCTTGCCGTACGAGCTGACCATGGGGG
AGACGTCCCGAATAGGGATCTTCCAGGAAGCCACGCCCAGCGTGGCCAAC
ATCAACACCTTTGTGGAACAGCGGGATGCCTTTTCGATGAACGTGATGGA
GGTCCCGGCTGGGACAGGCTCCGGCTTCGTGTGGAACGACAAAGgCTACA
TCGTGACGAACTACCACGTGATCCGATCCGCCGAGTCCGCCCAAGTCACC
CTCACGGACCGGGACGGGCATCAATCGACCTACAAAGCCCTCTTGCGCGG
CTTCGACCCCGACAAGGACGTGGCTGTCCTCCGTGTGgaagccccccccg
cctccctccggcccatccccgtcggctcctcctccaccttgaaGGTCGGT
CAGGCGGCCCTGGCGATTGGCAACCCCTTTGGCCTCGACCACACCTTAAC
TTCCGGGGTCATCTCGGGGCTGGGCCGGGAGGTGCGCTCGCCGTCGGGGC
GGCCCATCAGTAACGTGATTCAGACGGATGCGGCCATCAATCCAGGAAAC
TCGGGCGGGCCCCTCTTGGACTCCGCCGGGCGCTTGGTGGGGATGAACAC
GGCCATCTACTCCCCCTCCGGGGCCTCCGCGGGCATCGGCTTCGCCATTC
CGGTCGACACGCTGAAATTTGTGGTGGAAACCATCatcaaggacgggaag
gtggtCAGACCCTTGATTGGGATAACGTACTTGGAGAGCAGCCAGGCCAA
AGCCTtgggtaggaagggggggagggggagggcgggagggagggcggggt
cagCACGTGCTAGGGCTCTGACGAGTCGTCGACTTTTCTCGTTGCTGTGA
ATGGCCACGCCACAGCAAGCCGTGTCTTATGGGGCGTCTCGCACGGTGGT
CGCACCTGCAAAGCCCGGTCGCCGCAGCCAGGGCAGAATGGCAAGCCCaa
gtcctcgtcttcctccttgccggcAGCAGGCCAGGACACTCTTAGGCACA
TTTCTTGCCAtgtccctcctcgtccttccgGCAACAAGCTCGGCCTTCCT
CATGCCCTACACGAGCAGCAGAAGGACTtctcctttgcctttttcCCGCA
GCACCCTGTCGTCCCAGACTtatctttcttttccccacGTGCTCCGGGCA
TCACGGctgtctacctcctccccctcctcctcctcctcctcctcctcctc
ctctttctcctcttcctcctcttcctcctcttcctcctcctctccctcct
ctttctcatccccctccttcccttctccacaCACCCGTATATTggagccc
tcccctccggaCGTGATCGATGCTACTTTCCCTTTCCGGCTGGTCCTTCG
TCGACTCAAAAACGCCGTCGGCCACGCTGTCACCGTGGGACTCATGCTCG
TCACCAGCTCCTtcggcgccttctccctcccattccccgccgcggccatc
cctcccctcatgTCCTCGGTGCCCGTGCCAAGCACCAGCATGCCCGCCAC
GGTGGGCTACCGGGATGCTTCCCTCTTGCCGTACGAGCTGACCATGGGGG
AGACGTCCCGAATAGGGATCTTCCAGGAAGCCACGCCCAGCGTGGCCAAC
ATCAACACCTTTGTGGAACAGCGGGATGCCTTTTCGATGAACGTGATGGA
GGTCCCGGCTGGGACAGGCTCCGGCTTCGTGTGGAACGACAAAGgCTACA
TCGTGACGAACTACCACGTGATCCGATCCGCCGAGTCCGCCCAAGTCACC
CTCACGGACCGGGACGGGCATCAATCGACCTACAAAGCCCTCTTGCGCGG
CTTCGACCCCGACAAGGACGTGGCTGTCCTCCGTGTGgaagccccccccg
cctccctccggcccatccccgtcggctcctcctccaccttgaaGGTCGGT
CAGGCGGCCCTGGCGATTGGCAACCCCTTTGGCCTCGACCACACCTTAAC
TTCCGGGGTCATCTCGGGGCTGGGCCGGGAGGTGCGCTCGCCGTCGGGGC
GGCCCATCAGTAACGTGATTCAGACGGATGCGGCCATCAATCCAGGAAAC
TCGGGCGGGCCCCTCTTGGACTCCGCCGGGCGCTTGGTGGGGATGAACAC
GGCCATCTACTCCCCCTCCGGGGCCTCCGCGGGCATCGGCTTCGCCATTC
CGGTCGACACGCTGAAATTTGTGGTGGAAACCATCatcaaggacgggaag
gtggtCAGACCCTTGATTGGGATAACGTACTTGGAGAGCAGCCAGGCCAA
AGCCTtgggtaggaagggggggagggggagggcgggagggagggcggggt
cagCACGTGCTAGGGCTCTGACGAGTCGTCGACTTTTCTCGTTGCTGTGA
ATGGCCACGCCACAGCAAGCCGTGTCTTATGGGGCGTCTCGCACGGTGGT
CGCACCTGCAAAGCCCGGTCGCCGCAGCCAGGGCAGAATGGCAAGCCCaa
gtcctcgtcttcctccttgccggcAGCAGGCCAGGACACTCTTAGGCACA
TTTCTTGCCAtgtccctcctcgtccttccgGCAACAAGCTCGGCCTTCCT
CATGCCCTACACGAGCAGCAGAAGGACTtctcctttgcctttttcCCGCA
GCACCCTGTCGTCCCAGACTtatctttcttttccccacGTGCTCCGGGCA
TCACGGctgtctacctcctccccctcctcctcctcctcctcctcctcctc
ctctttctcctcttcctcctcttcctcctcttcctcctcctctccctcct
ctttctcatccccctccttcccttctccacaCACCCGTATATTggagccc
tcccctccggaCGTGATCGATGCTACTTTCCCTTTCCGGCTGGTCCTTCG
TCGACTCAAAAACGCCGTCGGCCACGCTGTCACCGTGGGACTCATGCTCG
TCACCAGCTCCTtcggcgccttctccctcccattccccgccgcggccatc
cctcccctcatgTCCTCGGTGCCCGTGCCAAGCACCAGCATGCCCGCCAC
GGTGGGCTACCGGGATGCTTCCCTCTTGCCGTACGAGCTGACCATGGGGG
AGACGTCCCGAATAGGGATCTTCCAGGAAGCCACGCCCAGCGTGGCCAAC
ATCAACACCTTTGTGGAACAGCGGGATGCCTTTTCGATGAACGTGATGGA
GGTCCCGGCTGGGACAGGCTCCGGCTTCGTGTGGAACGACAAAGgCTACA
TCGTGACGAACTACCACGTGATCCGATCCGCCGAGTCCGCCCAAGTCACC
CTCACGGACCGGGACGGGCATCAATCGACCTACAAAGCCCTCTTGCGCGG
CTTCGACCCCGACAAGGACGTGGCTGTCCTCCGTGTGgaagccccccccg
cctccctccggcccatccccgtcggctcctcctccaccttgaaGGTCGGT
CAGGCGGCCCTGGCGATTGGCAACCCCTTTGGCCTCGACCACACCTTAAC
TTCCGGGGTCATCTCGGGGCTGGGCCGGGAGGTGCGCTCGCCGTCGGGGC
GGCCCATCAGTAACGTGATTCAGACGGATGCGGCCATCAATCCAGGAAAC
TCGGGCGGGCCCCTCTTGGACTCCGCCGGGCGCTTGGTGGGGATGAACAC
GGCCATCTACTCCCCCTCCGGGGCCTCCGCGGGCATCGGCTTCGCCATTC
CGGTCGACACGCTGAAATTTGTGGTGGAAACCATCatcaaggacgggaag
gtggtCAGACCCTTGATTGGGATAACGTACTTGGAGAGCAGCCAGGCCAA
AGCCTtgggtaggaagggggggagggggagggcgggagggagggcggggt
cagCACGTGCTAGGGCTCTGACGAGTCGTCGACTTTTCTCGTTGCTGTGA

Synonyms

Publications