rna9042, rna9042 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9042
Unique Name	rna9042
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	942
Alignment location	KK037251.1:185564..188180 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100804g2.8730.mrna
Orig protein id	gnl\|cribi\|Naga_100804g2.8730
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:185564..188180 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100804g2	gene8769	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21660.1	cds9012	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9042	rna9042-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:185564..188180-
coding sequence from alignment at KK037251.1:185564..188180-

mRNA sequence

>rna9042 ID=rna9042|Name=rna9042|organism=Nannochloropsis gaditana|type=mRNA|length=942bp
CCCGCATTCCCCTTGGATGATACAGGCTCGCAATCAGTCTCTTCCTCTCG
TCACGGATCCTGGACCTGCATGCTATCTTTCCACGATCTGCCACAAATTT
GAAAAATAAATTAGTTCGGAAGCTGCCGCTCCATTGTTTGCGTCCATCTC
GCGTGATTTGTGGCCGTAAGGAATGGAACCTCCCGCCCCTCGCCGCCCTC
CGCCGCTTCCGAAGACTGATACCGTCCCTCCTGCTTCGGCCTCGGCACAA
GCACCACCTCATCCGAACTCTACTATCTCAAGTGCTTACATGCCTCCATC
GTGGGGGGGGCGGCCTTCACCGTCGGAGCCAGCTGTTACCTTGGAGGTCC
TCAGGAACGGTGTCGAGGTCGATCGACTCGATCTCTTCGCCTCCCCAACG
CCGTCAAAGCCTTATGTTCCCGCGGACACAGCTTCGTCTCAAACGCCTTC
CTCGTGCCAGCATTACTACACCTTCGGTCGTCTCCCGGGAGCCGTTAATT
TTGTCCTCGATAATCCGACCGTCTCCCGGGTCCACGCGGTCTGTCAGTTC
CGAAAAGCCGACGGCACACTGCACGTCCAGGACCTTGGGAGCACGCATGG
CACGTACCTTAACAAACAACGCTTGCCACCCCGATCATGGGAGAGCCTCC
ATGTGGGTGACATCTTGCAGTTCGGACAATCCACCCGCCTGTACGTGGTG
AGTGGCCCCGAGGTCCTGGGGCGTCCGGAGGTGGAGGACGAGAAGCTGGA
GGCCTATCGCACAGAGAGGGCGAAAGTGCGTGCCTGGCGAGAGGCGAGGA
GGAGGAAGAAGGAAGGGCTGGCGGCGGGGCAAGGGCCGGAGGAGGCGGGA
GAGGAGGAAGGGGGGATTTCATGGGGCCTGGGGGAGGACGCCGAGAGGGA
GGAGGAGGAGGAGGAAGTGGAGGGAGGGGCGGGCGGGCGGGG

protein sequence of rna9042

>rna9042-protein ID=rna9042-protein|Name=rna9042|organism=Nannochloropsis gaditana|type=polypeptide|length=802bp
MDDRTGKTKNKSLSTVTFAEAHSSRRNENTTITMRQQFCGDDVNDAEYYY
EQIETDCRSLEENAKRLGAANWDQVQCGDAATEGRDENLTNSRNRNPIET
QTKIERVSSLVPGENLEGCSTSQVGHSLTSPAHQMPASSQKCTRISSRGD
KTGIHTMRLPSSAPLPELTHQEHVYSGPEISPDIDRSQSRSNGDLSPPLP
HSTLTNPTATMPTTHLSPTTVESPPKREPALSVTSRPPSSNQESSSSQSH
GVITALMATLRAHTIGNDLPDALLTTHCQGLVKMLRETAALNRFILGESA
LLGDSQAYMDVCTHHVQRYATRQLGSLRILREDFQDKHAALQKELRGLRE
QASSLRARVFQAAWPEEKKTVILAALQRYLHVDQPGGELQTLDLTESAIG
AVQKLRRQLPRLPEEADALREVFGKIKRVTRTLVALGLTTEEQTSSAWES
VMQLLTYRPMGFVLEEAGRAWRELKDVKLQEAQRRLEQKGRLTALLERAG
SPPMEETGMQQEAGISEALEMEGGRRKSVESCTSDRSLGRSSWGSKSRRS
SSSSCSSGTAGERESVLEEDDPERPRDSSETSHTQTPPAGSNMTAPWASA
SSRKSSRSRLLRNGPSPTSSPSSPSTAPPFPRSATRPPARSSMYVVGTSA
SAMLGGAPVLTNPGGGAGGGRGRGPRASTGTGKSAGTVAAAAVPTRRTTP
PPSTTTGRGANAGSGSKLHVRGAPGDDACLGIPVTEALSGRHEGLSSAVD
AGSSITPHESTATAGNQPGKASHISRSTCSSRSKGMSQISASPDTRGWQQ
LP

mRNA from alignment at KK037251.1:185564..188180-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9042 ID=rna9042|Name=rna9042|organism=Nannochloropsis gaditana|type=mRNA|length=2617bp|location=Sequence derived from alignment at KK037251.1:185564..188180- (Nannochloropsis gaditana)
TATCATCGCCCATGTGCCCTTTGAGCGACATAGGCTGCGTGCTCCTCCAG
AACAACCACCTGGTTTGATTGATAGATGGTCTCGTGCCACGAGGCCGAGC
AGATAATCACCTAATTCATTACATACACGTAGGCCATTGACAGCATAAGT
GCTTTCTTAGGCCGCTTTTAAAAAGTTTGAAGCGTCGTGCTTTGTTTTTA
CACAGCCAATGGATGACAGGACGGGAAAAACGAAAAATAAATCGCTCAGC
ACCGTAACATTTGCCGAGGCGCATAGCAGCAGAAGGAATGAGAATACGAC
GATCACCATGCGTCAGCAGTTTTGTGGCGATGATGTCAACGATGCAGAAT
ACTACTACGAGCAGATCGAGACGGACTGCAGGAGTCTGGAGGAGAACGCC
AAAAGACTGGGTGCTGCTAACTGGGATCAAGTACAATGCGGAGACGCAGC
AACTGAAGGAAGAGATGAAAATTTGACAAACTCAAGAAATCGGAATCCGA
TAGAGACACAAACCAAGATAGAAAGGGTGTCAAGTCTGGTACCAGGTGAA
AACTTGGAGGGCTGCTCGACGTCCCAAGTGGGCCACTCATTGACGAGTCC
GGCACATCAGATGCCTGCTTCCTCCCAAAAATGCACGCGCATATCTAGCC
GCGGGGATAAAACTGGCATTCACACAATGCGTTTGCCCTCATCGGCGCCC
CTGCCAGAGTTGACCCACCAGGAGCACGTGTATTCTGGCCCCGAAATCTC
CCCAGATATCGACCGCAGCCAAAGTCGTTCGAATGGGGACCTATCACCGC
CACTGCCCCACAGCACTTTGACAAACCCTACAGCAACCATGCCTACGACT
CATCTATCACCTACTACCGTTGAAAGTCCGCCCAAGCGTGAGCCCGCGTT
GTCCGTGACGTCTCGACCGCCTTCTTCCAACCAAGAATCCTCGTCCTCCC
AATCCCATGGGGTCATCACCGCCTTGATGGCCACCCTGAGAGCACATACG
ATTGGAAATGATCTCCCAGACGCCCTTCTTACGACGCACTGCCAGGGGCT
TGTTAAGATGTTGCGGGAAACCGCGGCCCTGAACCGCTTCATCCTCGGAG
AAAGCGCCCTACTCGGCGACAGTCAAGCCTACATGGACGTCTGCACCCAC
CATGTCCAGAGATACGCCACCAGACAGCTGGGTAGCCTGAGGATCCTCCG
GGAGGATTTCCAAGACAAGCACGCGGCCCTGCAGAAAGAGCTGCGGGGGC
TGCGGGAACAGGCCTCGAGCCTGCGAGCACGTGTCTTCCAGGCGGCCTGG
CCGGAGGAGAAGAAGACCGTCATCCTCGCTGCCCTCCAGCGATATCTCCA
CGTGGATCAGCCAGGCGGTGAGCTTCAGACCCTGGATCTGACGGAATCTG
CGATCGGGGCCGTGCAAAAACTCCGGCGCCAGCTGCCCCGCCTCCCCGAG
GAGGCCGACGCCCTCCGGGAGGTCTTTGGGAAGATTAAACGGGTGACCCG
GACCTTGGTGGCCTTGGGGCTGACCACGGAGGAACAGACATCGAGCGCCT
GGGAAAGCGTCATGCAGCTTCTGACCTACCGCCCCATGGGCTTCGTCCTG
GAGGAGGCGGGCCGCGCCTGGCGCGAGCTCAAAGACGTTAAACTGCAGGA
GGCTCAACGCCGGTTGGAGCAAAAAGGGCGTCTGACCGCCTTGCTCGAGA
GGGCGGGCAGCCCCCCGATGGAGGAGACAGGGATGCAGCAAGAGGCTGGC
ATCTCAGAGGCGCTGGAAATGGAAGGCGGACGAAGAAAGAGCGTGGAAAG
CTGCACTAGTGACAGGAGCCTTGGGAGGAGCAGTTGGGGTAGCAAAAGCC
GTCGCAGCAGCAGCAGCAGCTGTAGCAGTGGTACGGCTGGGGAGAGAGAA
TCTGTATTAGAGGAAGATGACCCGGAAAGACCGCGCGATTCCTCGGAGAC
CAGCCACACCCAGACACCCCCCGCCGGCAGCAACATGACGGCGCCATGGG
CGAGCGCCTCGAGCCGCAAAAGTTCTCGGTCGAGGCTCCTGCGGAATGGG
CCTTCCCCCACCTCCTCCCCTTCCTCTCCTTCCACAGCCCCGCCATTTCC
CCGTTCTGCCACCCGTCCTCCAGCACGGTCCAGCATGTACGTGGTCGGGA
CCTCCGCCAGTGCCATGTTGGGAGGCGCCCCTGTCCTTACCAATCCTGGA
GGAGGGGCCGGCGGAGGGCGGGGTAGAGGGCCACGGGCATCCACGGGGAC
AGGGAAGTCGGCCGGGACGGTGGCGGCAGCCGCGGTGCCTACCCGCCGGA
CGACCCCGCCTCCTTCCACCACCACCGGGAGAGGAGCCAACGCAGGCTCT
GGGAGCAAGCTTCACGTCCGAGGAGCACCAGGCGATGACGCTTGCCTCGG
GATCCCGGTCACGGAGGCCCTGTCCGGGAGGCACGAGGGTCTCTCCTCCG
CTGTGGATGCTGGCAGTAGCATCACCCCACACGAGAGCACGGCCACAGCC
GGTAACCAGCCGGGCAAGGCCAGCCATATATCGAGAAGCACTTGCAGCAG
TAGGAGCAAGGGTATGTCTCAGATTTCAGCGAGCCCGGACACAAGAGGAT
GGCAGCAGCTTCCGTAG

Coding sequence (CDS) from alignment at KK037251.1:185564..188180-

>rna9042 ID=rna9042|Name=rna9042|organism=Nannochloropsis gaditana|type=CDS|length=2409bp|location=Sequence derived from alignment at KK037251.1:185564..188180- (Nannochloropsis gaditana)
ATGGATGACAGGACGGGAAAAACGAAAAATAAATCGCTCAGCACCGTAAC
ATTTGCCGAGGCGCATAGCAGCAGAAGGAATGAGAATACGACGATCACCA
TGCGTCAGCAGTTTTGTGGCGATGATGTCAACGATGCAGAATACTACTAC
GAGCAGATCGAGACGGACTGCAGGAGTCTGGAGGAGAACGCCAAAAGACT
GGGTGCTGCTAACTGGGATCAAGTACAATGCGGAGACGCAGCAACTGAAG
GAAGAGATGAAAATTTGACAAACTCAAGAAATCGGAATCCGATAGAGACA
CAAACCAAGATAGAAAGGGTGTCAAGTCTGGTACCAGGTGAAAACTTGGA
GGGCTGCTCGACGTCCCAAGTGGGCCACTCATTGACGAGTCCGGCACATC
AGATGCCTGCTTCCTCCCAAAAATGCACGCGCATATCTAGCCGCGGGGAT
AAAACTGGCATTCACACAATGCGTTTGCCCTCATCGGCGCCCCTGCCAGA
GTTGACCCACCAGGAGCACGTGTATTCTGGCCCCGAAATCTCCCCAGATA
TCGACCGCAGCCAAAGTCGTTCGAATGGGGACCTATCACCGCCACTGCCC
CACAGCACTTTGACAAACCCTACAGCAACCATGCCTACGACTCATCTATC
ACCTACTACCGTTGAAAGTCCGCCCAAGCGTGAGCCCGCGTTGTCCGTGA
CGTCTCGACCGCCTTCTTCCAACCAAGAATCCTCGTCCTCCCAATCCCAT
GGGGTCATCACCGCCTTGATGGCCACCCTGAGAGCACATACGATTGGAAA
TGATCTCCCAGACGCCCTTCTTACGACGCACTGCCAGGGGCTTGTTAAGA
TGTTGCGGGAAACCGCGGCCCTGAACCGCTTCATCCTCGGAGAAAGCGCC
CTACTCGGCGACAGTCAAGCCTACATGGACGTCTGCACCCACCATGTCCA
GAGATACGCCACCAGACAGCTGGGTAGCCTGAGGATCCTCCGGGAGGATT
TCCAAGACAAGCACGCGGCCCTGCAGAAAGAGCTGCGGGGGCTGCGGGAA
CAGGCCTCGAGCCTGCGAGCACGTGTCTTCCAGGCGGCCTGGCCGGAGGA
GAAGAAGACCGTCATCCTCGCTGCCCTCCAGCGATATCTCCACGTGGATC
AGCCAGGCGGTGAGCTTCAGACCCTGGATCTGACGGAATCTGCGATCGGG
GCCGTGCAAAAACTCCGGCGCCAGCTGCCCCGCCTCCCCGAGGAGGCCGA
CGCCCTCCGGGAGGTCTTTGGGAAGATTAAACGGGTGACCCGGACCTTGG
TGGCCTTGGGGCTGACCACGGAGGAACAGACATCGAGCGCCTGGGAAAGC
GTCATGCAGCTTCTGACCTACCGCCCCATGGGCTTCGTCCTGGAGGAGGC
GGGCCGCGCCTGGCGCGAGCTCAAAGACGTTAAACTGCAGGAGGCTCAAC
GCCGGTTGGAGCAAAAAGGGCGTCTGACCGCCTTGCTCGAGAGGGCGGGC
AGCCCCCCGATGGAGGAGACAGGGATGCAGCAAGAGGCTGGCATCTCAGA
GGCGCTGGAAATGGAAGGCGGACGAAGAAAGAGCGTGGAAAGCTGCACTA
GTGACAGGAGCCTTGGGAGGAGCAGTTGGGGTAGCAAAAGCCGTCGCAGC
AGCAGCAGCAGCTGTAGCAGTGGTACGGCTGGGGAGAGAGAATCTGTATT
AGAGGAAGATGACCCGGAAAGACCGCGCGATTCCTCGGAGACCAGCCACA
CCCAGACACCCCCCGCCGGCAGCAACATGACGGCGCCATGGGCGAGCGCC
TCGAGCCGCAAAAGTTCTCGGTCGAGGCTCCTGCGGAATGGGCCTTCCCC
CACCTCCTCCCCTTCCTCTCCTTCCACAGCCCCGCCATTTCCCCGTTCTG
CCACCCGTCCTCCAGCACGGTCCAGCATGTACGTGGTCGGGACCTCCGCC
AGTGCCATGTTGGGAGGCGCCCCTGTCCTTACCAATCCTGGAGGAGGGGC
CGGCGGAGGGCGGGGTAGAGGGCCACGGGCATCCACGGGGACAGGGAAGT
CGGCCGGGACGGTGGCGGCAGCCGCGGTGCCTACCCGCCGGACGACCCCG
CCTCCTTCCACCACCACCGGGAGAGGAGCCAACGCAGGCTCTGGGAGCAA
GCTTCACGTCCGAGGAGCACCAGGCGATGACGCTTGCCTCGGGATCCCGG
TCACGGAGGCCCTGTCCGGGAGGCACGAGGGTCTCTCCTCCGCTGTGGAT
GCTGGCAGTAGCATCACCCCACACGAGAGCACGGCCACAGCCGGTAACCA
GCCGGGCAAGGCCAGCCATATATCGAGAAGCACTTGCAGCAGTAGGAGCA
AGGGTATGTCTCAGATTTCAGCGAGCCCGGACACAAGAGGATGGCAGCAG
CTTCCGTAG

Synonyms

Publications