EWM21660.1, cds9012 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM21660.1 vs. NCBI_GenBank
Match: gi|585101919|gb|EWM21660.1| (hypothetical protein Naga_100804g2 [Nannochloropsis gaditana]) HSP 1 Score: 1627.07 bits (4212), Expect = 0.000e+0 Identity = 802/802 (100.00%), Postives = 802/802 (100.00%), Query Frame = 0
Query: 1 MDDRTGKTKNKSLSTVTFAEAHSSRRNENTTITMRQQFCGDDVNDAEYYYEQIETDCRSLEENAKRLGAANWDQVQCGDAATEGRDENLTNSRNRNPIETQTKIERVSSLVPGENLEGCSTSQVGHSLTSPAHQMPASSQKCTRISSRGDKTGIHTMRLPSSAPLPELTHQEHVYSGPEISPDIDRSQSRSNGDLSPPLPHSTLTNPTATMPTTHLSPTTVESPPKREPALSVTSRPPSSNQESSSSQSHGVITALMATLRAHTIGNDLPDALLTTHCQGLVKMLRETAALNRFILGESALLGDSQAYMDVCTHHVQRYATRQLGSLRILREDFQDKHAALQKELRGLREQASSLRARVFQAAWPEEKKTVILAALQRYLHVDQPGGELQTLDLTESAIGAVQKLRRQLPRLPEEADALREVFGKIKRVTRTLVALGLTTEEQTSSAWESVMQLLTYRPMGFVLEEAGRAWRELKDVKLQEAQRRLEQKGRLTALLERAGSPPMEETGMQQEAGISEALEMEGGRRKSVESCTSDRSLGRSSWGSKSRRSSSSSCSSGTAGERESVLEEDDPERPRDSSETSHTQTPPAGSNMTAPWASASSRKSSRSRLLRNGPSPTSSPSSPSTAPPFPRSATRPPARSSMYVVGTSASAMLGGAPVLTNPGGGAGGGRGRGPRASTGTGKSAGTVAAAAVPTRRTTPPPSTTTGRGANAGSGSKLHVRGAPGDDACLGIPVTEALSGRHEGLSSAVDAGSSITPHESTATAGNQPGKASHISRSTCSSRSKGMSQISASPDTRGWQQLP 802
MDDRTGKTKNKSLSTVTFAEAHSSRRNENTTITMRQQFCGDDVNDAEYYYEQIETDCRSLEENAKRLGAANWDQVQCGDAATEGRDENLTNSRNRNPIETQTKIERVSSLVPGENLEGCSTSQVGHSLTSPAHQMPASSQKCTRISSRGDKTGIHTMRLPSSAPLPELTHQEHVYSGPEISPDIDRSQSRSNGDLSPPLPHSTLTNPTATMPTTHLSPTTVESPPKREPALSVTSRPPSSNQESSSSQSHGVITALMATLRAHTIGNDLPDALLTTHCQGLVKMLRETAALNRFILGESALLGDSQAYMDVCTHHVQRYATRQLGSLRILREDFQDKHAALQKELRGLREQASSLRARVFQAAWPEEKKTVILAALQRYLHVDQPGGELQTLDLTESAIGAVQKLRRQLPRLPEEADALREVFGKIKRVTRTLVALGLTTEEQTSSAWESVMQLLTYRPMGFVLEEAGRAWRELKDVKLQEAQRRLEQKGRLTALLERAGSPPMEETGMQQEAGISEALEMEGGRRKSVESCTSDRSLGRSSWGSKSRRSSSSSCSSGTAGERESVLEEDDPERPRDSSETSHTQTPPAGSNMTAPWASASSRKSSRSRLLRNGPSPTSSPSSPSTAPPFPRSATRPPARSSMYVVGTSASAMLGGAPVLTNPGGGAGGGRGRGPRASTGTGKSAGTVAAAAVPTRRTTPPPSTTTGRGANAGSGSKLHVRGAPGDDACLGIPVTEALSGRHEGLSSAVDAGSSITPHESTATAGNQPGKASHISRSTCSSRSKGMSQISASPDTRGWQQLP
Sbjct: 1 MDDRTGKTKNKSLSTVTFAEAHSSRRNENTTITMRQQFCGDDVNDAEYYYEQIETDCRSLEENAKRLGAANWDQVQCGDAATEGRDENLTNSRNRNPIETQTKIERVSSLVPGENLEGCSTSQVGHSLTSPAHQMPASSQKCTRISSRGDKTGIHTMRLPSSAPLPELTHQEHVYSGPEISPDIDRSQSRSNGDLSPPLPHSTLTNPTATMPTTHLSPTTVESPPKREPALSVTSRPPSSNQESSSSQSHGVITALMATLRAHTIGNDLPDALLTTHCQGLVKMLRETAALNRFILGESALLGDSQAYMDVCTHHVQRYATRQLGSLRILREDFQDKHAALQKELRGLREQASSLRARVFQAAWPEEKKTVILAALQRYLHVDQPGGELQTLDLTESAIGAVQKLRRQLPRLPEEADALREVFGKIKRVTRTLVALGLTTEEQTSSAWESVMQLLTYRPMGFVLEEAGRAWRELKDVKLQEAQRRLEQKGRLTALLERAGSPPMEETGMQQEAGISEALEMEGGRRKSVESCTSDRSLGRSSWGSKSRRSSSSSCSSGTAGERESVLEEDDPERPRDSSETSHTQTPPAGSNMTAPWASASSRKSSRSRLLRNGPSPTSSPSSPSTAPPFPRSATRPPARSSMYVVGTSASAMLGGAPVLTNPGGGAGGGRGRGPRASTGTGKSAGTVAAAAVPTRRTTPPPSTTTGRGANAGSGSKLHVRGAPGDDACLGIPVTEALSGRHEGLSSAVDAGSSITPHESTATAGNQPGKASHISRSTCSSRSKGMSQISASPDTRGWQQLP 802
BLAST of EWM21660.1 vs. NCBI_GenBank
Match: gi|298704819|emb|CBJ48967.1| (hypothetical protein Esi_0102_0077 [Ectocarpus siliculosus]) HSP 1 Score: 71.633 bits (174), Expect = 3.258e-9 Identity = 59/243 (24.28%), Postives = 107/243 (44.03%), Query Frame = 0
Query: 269 LPDALLTTHCQGLVKMLRETAALNRFILGESALLGDSQAYMDVCTHHVQRYATRQLGSLRILREDFQDKHAALQKELRGLREQASSLRARVFQAAWPEEKKTVILAALQRYLHV--DQPGGELQTLDLTESAIGAVQKLRRQLPRLPEEADALREVFGKIKRVTRTLVALGLTTEEQT---SSAWESVMQLLTYRPMGFVLEEAGRAWRELKDVKLQEAQRRLEQKGRLTALLE--RAGSPPM 504
LP + LV+ +RE L R I ES D AY+++ + R++ R+L++DF +K ++ + + S + AR + EKKT+ L A+Q Y +V + G + T+ I ++ R ++ ++P AD++ ++ I+R L + T W SV++ L P+ A + LK +K ++ + + + RL LE +PPM
Sbjct: 23 LPQDFKLKQVRSLVRYMREVDGLVRGINSESGFEADCTAYLEILCTKEESELNRRVSCTRVLKQDFDEKRREWRRTKKNVINAISEMSARALKFECS-EKKTIALHAIQFYKNVMANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTVNASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKLKGKQEEFKKREMSRLMNKLEAQDKATPPM 264
BLAST of EWM21660.1 vs. NCBI_GenBank
Match: gi|298704808|emb|CBJ48956.1| (hypothetical protein Esi_0102_0050 [Ectocarpus siliculosus]) HSP 1 Score: 65.4698 bits (158), Expect = 9.738e-8 Identity = 50/195 (25.64%), Postives = 95/195 (48.72%), Query Frame = 0
Query: 269 LPDALLTTHCQGLVKMLRETAALNRFILGESALLGDSQAYMDVCTHHVQRYATRQLGSLRILREDFQDKHAALQKELRGLREQASSLRARVFQAAWPEEKKTVILAALQRY---LHVDQPG--GELQTLDLTESAIGAVQKLRRQLPRLPEEADALREVFGKIKRVTRTLVAL--GLTTEEQ-TSSAWESVMQLL 455
LPDA + LV+ ++E L R I+ ES D+ +Y+++ R++ S R+LR+D+ +K +++ + + S+ AR + +E+KT+ L AL Y + D GE ++ T+S + ++ R ++ ++P AD++ ++ I++ R L G + Q W SV+Q L
Sbjct: 30 LPDAFKLAQVRSLVRYIKEVGLLQRRIIDESGFEADTNSYLEILCAKEDGDLMRKVSSTRVLRQDYDEKRLEWKRQKKSVINAIGSMTARTLRFE-DKERKTIALHALAFYKSIMATDDGAIPGESES---TDSLMEQYKRHRSEISKIPMYADSILKMLKDIRKTVRASSKLQPGTNSFAQFLEEWWASVVQFL 220 The following BLAST results are available for this feature:
BLAST of EWM21660.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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