rna9038, rna9038 (mRNA) Nannochloropsis gaditana

Overview
Namerna9038
Unique Namerna9038
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1047
Alignment locationKK037251.1:176797..178509 -

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Properties
Property NameValue
Productclathrin assembly small subunit protein ap19
Orig transcript idgnl|cribi|Naga_100656g1.12.mrna
Orig protein idgnl|cribi|Naga_100656g1.12
GeneAPS1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:176797..178509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
APS1gene8765Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9038rna9038-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21665.1cds9008Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9038 ID=rna9038|Name=rna9038|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp
GCGCCCCTCTCTGTGTCGAGGCCAGACCCCTCCCCCCCCTCCTCCCCCGC
GTCCTCCCGAGGCCCCTCCCTCCCTCCCTCCCCTAAGACCTCCTCCTCAT
TGGCTTCCCTTCTGCCGAGCCTCCGGTCGGATGGAGGGAATCGTCTGAGG
CAAGGAGGGCCCGACCCGTTGTCCACTATGTCCGGTTGGGTGGAGGACGG
GATCCCTTCAGCAATGCTCTACACGTCCTCTCCCATCGCCCCATTTTGGA
ACAGCAGCCGCACCAATGGTACGCGCCAGCCTCCTCCTGTTTCTTCCGCA
CGGAACGACCAAAGAGGGGGGGGAGACGCCCAGGCGGCAGAGGATGCGCC
CGGTCTGGCGAAGGCCCTGGTCCACCAGGTGAGGGTCGGCGACTCCTACA
CACTGATCTTGCATGCCTTTCCCCCCGCCCAGCTCTTGACCATTAACCTC
TTCCCGAAGCGCGGGCAAGGGGTGGAGCTGGGTGTGCTCCCCTCTCTGCC
GGGGGAAGGGAAGGGAGGGGAAGGGCAAGATTGGACCTGGAAACCGAGCG
CCGCACTCCTGGGGAGCGAGTACGGGGGCGAAGAGTTTTTCATCGAGGTC
GTCTCGGAGCGGCAAGACGCCTTCGCCTACTCGCAAGCCTTCACTGTCAG
GCCGTAGAGAGGGCCTGTGGAGGCAGGGTTTCACTGTTCTAGAAGGGTGC
GGGTGTCTGTGACCTGTCCGAGGCCCGCATGGCCTCCCTGCGTCCGCATT
GCTCGCCCGAGGGGAGGAGTTTGTGGAAGGTCAAGTGGTTAAAGTATCAT
TGTAGGTTTATCAAATGTCCAGAGAAACAAAGTACTGAGTGTTATAGGAG
AAATAGCGTTTCTAGGACCCAAGCGGTGAGTGTTGCATTAAAGTAGAAGG
GCTGTGAACGACAAGTGGAAATGCGCGCCTGCCGAACGTGTCAAAGTGCA
AACTTCACACGGGTGAAGTGAAGACAAGCGTGCCTTCTAGGCGTTGCCAA
GCGGTGACTAAATGCATGGGGATTAGAAAGAAAAAAAATACAGGTCC
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protein sequence of rna9038

>rna9038-protein ID=rna9038-protein|Name=rna9038|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFI
EWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCE
LDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNL
AAMVAQMSRSR
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mRNA from alignment at KK037251.1:176797..178509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9038 ID=rna9038|Name=rna9038|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp|location=Sequence derived from alignment at KK037251.1:176797..178509- (Nannochloropsis gaditana)
GCACGGAGAGGGAATTCCTCGGGCATGTGTTATGGTAGGGGACGAAGCCT
GACGTTATCTTTCTACTCGGTTGGGATCCGTAGGTGCACGGAGGGTTTCT
TGTCTCCTCGCGATCTGAAAAGCAGGACGGGAACGGACGCCCACATCTTC
TGTTGCCCATGATCAACTTCCTTCTTTTGGTGAGTCGACAAGGGAAGACA
CGCCTCAGTAAATGGTATAAGCACTACACGACCAAGGAGAAGGCACGTGC
GATCAGGGAATTGACAAATCTGGTTTTGGCCAGGGCGCCTAAAATGTGTA
ACTTCATCGAGTGGAGGGATAAGAAGGTGAGTAGCTTTTAAGGTACCGCC
TACACGAGGGGAAAAATGAATCGAGGACATGACAATAGAATCGCTAGAGA
AACTCTCTTCTCCCGGAAGTCGTTAACTCGTGAATGTACCCGCTTCGGCG
AAAGCCTTCACTTTTAATGTTGATGACGCCCTCTTCCAGGGTACTGCTCA
GCGATTCTGACACGAAACCGCCCTTTATTGCCCCATTCTCCAGGTGATAT
ACAAACGATATGCCTCGCTTTTTTTTATCGCAGCCGTGGACAGCTCGGAC
AACGAGCTTATCACCCTGGAGGTACATAACACACGCTTAGTACTTGCATC
GTGCTCCTAGTTTCTCCTGCCACGCTCTTTAAGCATTACTCCTTGTTTTC
CTGTGTCGTGTCCCTGGCTCGCTTTCCATCGAATCCGTTTGGCTGCAAAG
ATGAGCGTAGCTTCATCCGCACGCGCTCTTTCGACCTCTGCCTCCGTTCC
ATCCCCTAAACCCTCTTGCCCTCCCCGCGCAGATGATCCATTTGTTTGTG
GAGATTTTGGACCGGTATTTTGGAAATGTCTGCGAGCTGGACATTATTTT
CAACTTTCACAAGGTAATTGGGGCAAGGGAGGCCCACGAGTGCCGTGTGC
AGATGAGTGGGAAAGGAGGAACAGCACGACTCCCTGATGTGTCCCTCCGG
AACCCATCCAATGTCCTTGTACACAAGTGTATCCTTACCAGCAACCGATC
TTTCACATTGATTGCCCCACCGATTCGCAGGCTTACTACATCCTGGACGA
GCTTTTCATCGGGGGTCATTTGCAAGAGAGCAGCAAGAACGAGGTTTTGC
GGGTAAGGCTCCTTCCGCGGACTGGCTGCATGATGGGTAGCACGGGAACG
GGCCGTGTGATGGATGCGTCCGAAGGGCAGAAGATGTGACGAGCATATCT
CATCGTTGAGTCCTAAAGTCCATGCCTAACCGTGATTTTTTTACCTTGTC
ATTTGTCGTGTCCGGCGTCCGGATGGAGCCTCTTCCCTGACCCTATTCCT
AAGTCTTACCCTAACCCTAACCCTAACGCTGACAGGTATGCTCTCAGATG
GACGAGCTGATGGAAGAGCAAAAAGACGACAATCTTGCCGCCATGGTGGC
GCAAATGTCGCGTAGCAGATAGACGAGGAGCTTCGCGTTGTGGAGTGAAA
AGAAATGATCGACAGAGAGGTTTTCTGTCGGCGCATCTTCCCTGTCGTGA
GTGCACACCACGCATTGTAAACAAAAGTAATCCGGAAGAGAACAAAATCC
TTCCTTCTCGCACGAACACGTGAAATTTTCTTTTCTCCTGAGACACAACG
TAAATCTCGATGCCTCGAACATTGATTAATAAATAAAGTGAAAGAAAGGA
AAAAAACGACGCC
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Coding sequence (CDS) from alignment at KK037251.1:176797..178509-

>rna9038 ID=rna9038|Name=rna9038|organism=Nannochloropsis gaditana|type=CDS|length=2430bp|location=Sequence derived from alignment at KK037251.1:176797..178509- (Nannochloropsis gaditana)
GTATGCTCTCAGATGGACGAGCTGATGGAAGAGCAAAAAGACGACAATCT
TGCCGCCATGGTGGCGCAAATGTCGCGTAGCAGATAGGCTTACTACATCC
TGGACGAGCTTTTCATCGGGGGTCATTTGCAAGAGAGCAGCAAGAACGAG
GTTTTGCGGATGATCCATTTGTTTGTGGAGATTTTGGACCGGTATTTTGG
AAATGTCTGCGAGCTGGACATTATTTTCAACTTTCACAAGGTGATATACA
AACGATATGCCTCGCTTTTTTTTATCGCAGCCGTGGACAGCTCGGACAAC
GAGCTTATCACCCTGGAGATGATCAACTTCCTTCTTTTGGTGAGTCGACA
AGGGAAGACACGCCTCAGTAAATGGTATAAGCACTACACGACCAAGGAGA
AGGCACGTGCGATCAGGGAATTGACAAATCTGGTTTTGGCCAGGGCGCCT
AAAATGTGTAACTTCATCGAGTGGAGGGATAAGAAGGTATGCTCTCAGAT
GGACGAGCTGATGGAAGAGCAAAAAGACGACAATCTTGCCGCCATGGTGG
CGCAAATGTCGCGTAGCAGATAGGCTTACTACATCCTGGACGAGCTTTTC
ATCGGGGGTCATTTGCAAGAGAGCAGCAAGAACGAGGTTTTGCGGATGAT
CCATTTGTTTGTGGAGATTTTGGACCGGTATTTTGGAAATGTCTGCGAGC
TGGACATTATTTTCAACTTTCACAAGGTGATATACAAACGATATGCCTCG
CTTTTTTTTATCGCAGCCGTGGACAGCTCGGACAACGAGCTTATCACCCT
GGAGATGATCAACTTCCTTCTTTTGGTGAGTCGACAAGGGAAGACACGCC
TCAGTAAATGGTATAAGCACTACACGACCAAGGAGAAGGCACGTGCGATC
AGGGAATTGACAAATCTGGTTTTGGCCAGGGCGCCTAAAATGTGTAACTT
CATCGAGTGGAGGGATAAGAAGGTATGCTCTCAGATGGACGAGCTGATGG
AAGAGCAAAAAGACGACAATCTTGCCGCCATGGTGGCGCAAATGTCGCGT
AGCAGATAGGCTTACTACATCCTGGACGAGCTTTTCATCGGGGGTCATTT
GCAAGAGAGCAGCAAGAACGAGGTTTTGCGGATGATCCATTTGTTTGTGG
AGATTTTGGACCGGTATTTTGGAAATGTCTGCGAGCTGGACATTATTTTC
AACTTTCACAAGGTGATATACAAACGATATGCCTCGCTTTTTTTTATCGC
AGCCGTGGACAGCTCGGACAACGAGCTTATCACCCTGGAGATGATCAACT
TCCTTCTTTTGGTGAGTCGACAAGGGAAGACACGCCTCAGTAAATGGTAT
AAGCACTACACGACCAAGGAGAAGGCACGTGCGATCAGGGAATTGACAAA
TCTGGTTTTGGCCAGGGCGCCTAAAATGTGTAACTTCATCGAGTGGAGGG
ATAAGAAGGTATGCTCTCAGATGGACGAGCTGATGGAAGAGCAAAAAGAC
GACAATCTTGCCGCCATGGTGGCGCAAATGTCGCGTAGCAGATAGGCTTA
CTACATCCTGGACGAGCTTTTCATCGGGGGTCATTTGCAAGAGAGCAGCA
AGAACGAGGTTTTGCGGATGATCCATTTGTTTGTGGAGATTTTGGACCGG
TATTTTGGAAATGTCTGCGAGCTGGACATTATTTTCAACTTTCACAAGGT
GATATACAAACGATATGCCTCGCTTTTTTTTATCGCAGCCGTGGACAGCT
CGGACAACGAGCTTATCACCCTGGAGATGATCAACTTCCTTCTTTTGGTG
AGTCGACAAGGGAAGACACGCCTCAGTAAATGGTATAAGCACTACACGAC
CAAGGAGAAGGCACGTGCGATCAGGGAATTGACAAATCTGGTTTTGGCCA
GGGCGCCTAAAATGTGTAACTTCATCGAGTGGAGGGATAAGAAGGTATGC
TCTCAGATGGACGAGCTGATGGAAGAGCAAAAAGACGACAATCTTGCCGC
CATGGTGGCGCAAATGTCGCGTAGCAGATAGGCTTACTACATCCTGGACG
AGCTTTTCATCGGGGGTCATTTGCAAGAGAGCAGCAAGAACGAGGTTTTG
CGGATGATCCATTTGTTTGTGGAGATTTTGGACCGGTATTTTGGAAATGT
CTGCGAGCTGGACATTATTTTCAACTTTCACAAGGTGATATACAAACGAT
ATGCCTCGCTTTTTTTTATCGCAGCCGTGGACAGCTCGGACAACGAGCTT
ATCACCCTGGAGATGATCAACTTCCTTCTTTTGGTGAGTCGACAAGGGAA
GACACGCCTCAGTAAATGGTATAAGCACTACACGACCAAGGAGAAGGCAC
GTGCGATCAGGGAATTGACAAATCTGGTTTTGGCCAGGGCGCCTAAAATG
TGTAACTTCATCGAGTGGAGGGATAAGAAG
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Synonyms
Publications