EWM21665.1, cds9008 (CDS) Nannochloropsis gaditana

Overview
NameEWM21665.1
Unique Namecds9008
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:178184..178351 -
Alignment locationKK037251.1:177889..177966 -
Alignment locationKK037251.1:177597..177677 -
Alignment locationKK037251.1:177358..177429 -
Alignment locationKK037251.1:177038..177124 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21665.1
Productclathrin assembly small subunit protein ap19
Orig transcript idgnl|cribi|Naga_100656g1.12.mrna
GeneAPS1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:178184..178351 -
KK037251.1supercontigKK037251.1:177889..177966 -
KK037251.1supercontigKK037251.1:177597..177677 -
KK037251.1supercontigKK037251.1:177358..177429 -
KK037251.1supercontigKK037251.1:177038..177124 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
Homology
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|585101928|gb|EWM21665.1| (clathrin assembly small subunit protein ap19 [Nannochloropsis gaditana])

HSP 1 Score: 333.954 bits (855), Expect = 4.910e-116
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLAAMVAQMSRSR 161
            MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLAAMVAQMSRSR
Sbjct:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLAAMVAQMSRSR 161          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|299469872|emb|CBN76726.1| (Clathrin assembly complex, small subunit [Ectocarpus siliculosus])

HSP 1 Score: 263.462 bits (672), Expect = 4.007e-88
Identity = 120/148 (81.08%), Postives = 136/148 (91.89%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
            MINFLLL+SRQGKTRL+KWY+ Y+ KEKAR +RE+T+ VLARA KMCNF+EWRDKK++YKRYASLFF+A +D  DNELITLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSK EVLRVCSQMD+LMEE K++
Sbjct:    1 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARALKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDDLMEEAKEE 148          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|676386773|ref|XP_009036665.1| (hypothetical protein AURANDRAFT_25892 [Aureococcus anophagefferens] >gi|676399647|ref|XP_009043101.1| hypothetical protein AURANDRAFT_35471 [Aureococcus anophagefferens] >gi|323445733|gb|EGB02199.1| hypothetical protein AURANDRAFT_35471 [Aureococcus anophagefferens] >gi|323452802|gb|EGB08675.1| hypothetical protein AURANDRAFT_25892 [Aureococcus anophagefferens])

HSP 1 Score: 244.202 bits (622), Expect = 2.879e-80
Identity = 121/170 (71.18%), Postives = 136/170 (80.00%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWR-DKKVIYKRYASLFFI--------------------AAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDN 149
            MINF+LLVSRQGKTRL+KWY+ Y+TKEKAR +RE T  VLARAPKMCNFIEWR DKK++YKRYASLFFI                    A VDS DNELITLEMIHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFI G L+ESSK EVL +C+QMDE+M+E K++ 
Sbjct:    1 MINFMLLVSRQGKTRLTKWYESYSTKEKARIVREAT--VLARAPKMCNFIEWRADKKIVYKRYASLFFICCGDRRRERAPRRRKLKFLPAGVDSEDNELITLEMIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELEESSKKEVLSICAQMDEMMDESKEEG 168          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|635365383|emb|CCI46255.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 237.654 bits (605), Expect = 4.806e-78
Identity = 108/151 (71.52%), Postives = 131/151 (86.75%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLA 151
            MI  +LLVSRQGKTRL+KWY + T KEKAR IRE+T LVL+R PK CNFIE++DKK++YKRYASLFFIA +   +NELITLE IHL+VE+LDRYFGNVCELDIIFNFHKAYYILDELF+GG+LQESSK EVLR+C+Q ++ ++E K++  A
Sbjct:    1 MIESILLVSRQGKTRLAKWYINATIKEKARMIREITTLVLSRPPKQCNFIEFKDKKIVYKRYASLFFIACISKDENELITLEAIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFVGGYLQESSKREVLRICTQQEDYVDESKEEGFA 151          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|325183550|emb|CCA18011.1| (Clathrin assembly complex putative [Albugo laibachii Nc14])

HSP 1 Score: 237.269 bits (604), Expect = 7.532e-78
Identity = 108/151 (71.52%), Postives = 131/151 (86.75%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLA 151
            MI  +LLVSRQGKTRL+KWY + T KEKAR IRE+T LVL+R PK CNFIE++DKK++YKRYASLFFIA +   +NELITLE IHL+VE+LDRYFGNVCELDIIFNFHKAYYILDELF+GG+LQESSK EVLR+C+Q ++ ++E K++  A
Sbjct:    1 MIESILLVSRQGKTRLAKWYINATIKEKARMIREITTLVLSRPPKQCNFIEFKDKKIVYKRYASLFFIACISKDENELITLEAIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFLGGYLQESSKREVLRICTQQEDYVDESKEEGFA 151          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|698814486|ref|XP_009840272.1| (hypothetical protein H257_14209 [Aphanomyces astaci] >gi|574104646|gb|ETV70175.1| hypothetical protein H257_14209 [Aphanomyces astaci])

HSP 1 Score: 236.884 bits (603), Expect = 1.002e-77
Identity = 107/148 (72.30%), Postives = 126/148 (85.14%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
            MI+F+LLVSRQGKTRLSKWY     K+KAR IRE+T LVL R  K CNFIEW+D+K++YKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG+LQE SK E+LRVC Q ++ MEE K+D
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSAVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 148          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|673049143|ref|XP_008878532.1| (hypothetical protein H310_12992 [Aphanomyces invadans] >gi|574465727|gb|ETV92762.1| hypothetical protein H310_12992 [Aphanomyces invadans])

HSP 1 Score: 236.884 bits (603), Expect = 1.093e-77
Identity = 107/148 (72.30%), Postives = 126/148 (85.14%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
            MI+F+LLVSRQGKTRLSKWY     K+KAR IRE+T LVL R  K CNFIEW+D+K++YKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG+LQE SK E+LRVC Q ++ MEE K+D
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSTVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 148          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|1173948802|gb|OQR96893.1| (Aps1, sigma subunit of the adaptin 1 complex [Thraustotheca clavata])

HSP 1 Score: 234.572 bits (597), Expect = 1.012e-76
Identity = 106/148 (71.62%), Postives = 128/148 (86.49%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
            MI+F+LLVSRQGKTRLSKWY     K+KAR IR++T+LVL R  K CNFIEW+D+K++YKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG+LQE SK EVLRVC+Q ++ MEE K++
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSTVPLKDKARIIRDVTSLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEIIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEVLRVCNQQEDFMEETKEE 148          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|669144406|ref|XP_008607765.1| (hypothetical protein SDRG_03896 [Saprolegnia diclina VS20] >gi|813164930|ref|XP_012203525.1| hypothetical protein SPRG_09014 [Saprolegnia parasitica CBS 223.65] >gi|530740699|gb|EQC38941.1| hypothetical protein SDRG_03896 [Saprolegnia diclina VS20] >gi|641531655|gb|KDO25715.1| hypothetical protein SPRG_09014 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 233.802 bits (595), Expect = 1.808e-76
Identity = 105/148 (70.95%), Postives = 128/148 (86.49%), Query Frame = 0
Query:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
            MI+F+LLVSRQGKTRLSKWY     K+KAR IR++T+LVL R  K CNFIEW+D+K++YKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG+LQE SK E+LRVC+Q ++ MEE K++
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSAVPLKDKARIIRDVTSLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEIIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCNQQEDFMEETKEE 148          
BLAST of EWM21665.1 vs. NCBI_GenBank
Match: gi|698814484|ref|XP_009840271.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574104647|gb|ETV70176.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 230.335 bits (586), Expect = 3.518e-75
Identity = 104/144 (72.22%), Postives = 122/144 (84.72%), Query Frame = 0
Query:    5 LLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
            +LLVSRQGKTRLSKWY     K+KAR IRE+T LVL R  K CNFIEW+D+K++YKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG+LQE SK E+LRVC Q ++ MEE K+D
Sbjct:    1 MLLVSRQGKTRLSKWYSAVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 144          
The following BLAST results are available for this feature:
BLAST of EWM21665.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101928|gb|EWM21665.1|4.910e-116100.00clathrin assembly small subunit protein ap19 [Nann... [more]
gi|299469872|emb|CBN76726.1|4.007e-8881.08Clathrin assembly complex, small subunit [Ectocarp... [more]
gi|676386773|ref|XP_009036665.1|2.879e-8071.18hypothetical protein AURANDRAFT_25892 [Aureococcus... [more]
gi|635365383|emb|CCI46255.1|4.806e-7871.52unnamed protein product [Albugo candida][more]
gi|325183550|emb|CCA18011.1|7.532e-7871.52Clathrin assembly complex putative [Albugo laibach... [more]
gi|698814486|ref|XP_009840272.1|1.002e-7772.30hypothetical protein H257_14209 [Aphanomyces astac... [more]
gi|673049143|ref|XP_008878532.1|1.093e-7772.30hypothetical protein H310_12992 [Aphanomyces invad... [more]
gi|1173948802|gb|OQR96893.1|1.012e-7671.62Aps1, sigma subunit of the adaptin 1 complex [Thra... [more]
gi|669144406|ref|XP_008607765.1|1.808e-7670.95hypothetical protein SDRG_03896 [Saprolegnia dicli... [more]
gi|698814484|ref|XP_009840271.1|3.518e-7572.22hypothetical protein, variant [Aphanomyces astaci]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9038rna9038Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications