rna9037, rna9037 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9037
Unique Name	rna9037
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	716
Alignment location	KK037251.1:172072..173118 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101714g2.7091.mrna
Orig protein id	gnl\|cribi\|Naga_101714g2.7091
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:172072..173118 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101714g2	gene8764	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21666.1	cds9007	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9037	rna9037-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:172072..173118-
coding sequence from alignment at KK037251.1:172072..173118-

mRNA sequence

>rna9037 ID=rna9037|Name=rna9037|organism=Nannochloropsis gaditana|type=mRNA|length=716bp
CGTCTCATACGCCCGCACATCACGGTAAAGATACACACAGGCTCAAGCAT
CATGTCTTTGGCTGAGCTCTCGCCCGCCCAGAAAGAGGAGATGGTGATCT
CCCTTTCTGCCCTCCTTCTCCAAGACTCCGGCGTAGACATGAGCGCCGAA
AATCTCGACGCAGTCATTAAGGCTTCTGGGAATACGGTTGCTGCTTACTA
CCCGGCGTTGTACGCCTCCTTGATCGAAAAGGCCGGTGGGAAGCTCGACA
AATTCATGGGAGCTCCGGGGGCGGGTGGTGGAGGTGGAGGAGGCGCCGGA
GCCCCAGCGGCGGCGGCAGCGGAGGGGGCGGCCCCAGAGGCGAAGAAGGA
GAAGAAGGAGGAGGAGGAGGAAGCCGACCTGGGAGCAGGGAACATGTTTG
GCGGGGACGGGTACTAAGCCATGCGCAAGCCGGCATGTTCCTGAGCGAGG
GGACGAGGAAGTGGCGCGGTCTCACGTGGAGAGGGAGGAGCCCTTTGTGC
GCAGGCGACGCCATTCAAGGGAGGAGGGGTTGTCCGGACGCCGGGGTGTG
CTGTGTTGGTTAGGGACGGGGAGGAGGCTCCCAAGGAAAAGTCAGGAAAA
AAACATTCAGATTCCGGCCGAGCATGGCTGTCAGGACTTGCCCCCCCGGG
GACGAGAGATGCTGCTGTCAGGGACGGGCAAAACGGTGGCTCTCAGCGCT
CTTTTTCGTCTGCTCT

protein sequence of rna9037

>rna9037-protein ID=rna9037-protein|Name=rna9037|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
APLSVSRPDPSPPSSPASSRGPSLPPSPKTSSSLASLLPSLRSDGGNRLR
QGGPDPLSTMSGWVEDGIPSAMLYTSSPIAPFWNSSRTNGTRQPPPVSSA
RNDQRGGGDAQAAEDAPGLAKALVHQVRVGDSYTLILHAFPPAQLLTINL
FPKRGQGVELGVLPSLPGEGKGGEGQDWTWKPSAALLGSEYGGEEFFIEV
VSERQDAFAYSQAFTVRP

mRNA from alignment at KK037251.1:172072..173118-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9037 ID=rna9037|Name=rna9037|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp|location=Sequence derived from alignment at KK037251.1:172072..173118- (Nannochloropsis gaditana)
GCGCCCCTCTCTGTGTCGAGGCCAGACCCCTCCCCCCCCTCCTCCCCCGC
GTCCTCCCGAGGCCCCTCCCTCCCTCCCTCCCCTAAGACCTCCTCCTCAT
TGGCTTCCCTTCTGCCGAGCCTCCGGTCGGATGGAGGGAATCGTCTGAGG
CAAGGAGGGCCCGACCCGTTGTCCACTATGTCCGGTTGGGTGGAGGACGG
GATCCCTTCAGCAATGCTCTACACGTCCTCTCCCATCGCCCCATTTTGGA
ACAGCAGCCGCACCAATGGTACGCGCCAGCCTCCTCCTGTTTCTTCCGCA
CGGAACGACCAAAGAGGGGGGGGAGACGCCCAGGCGGCAGAGGATGCGCC
CGGTCTGGCGAAGGCCCTGGTCCACCAGGTGAGGGTCGGCGACTCCTACA
CACTGATCTTGCATGCCTTTCCCCCCGCCCAGCTCTTGACCATTAACCTC
TTCCCGAAGCGCGGGCAAGGGGTGGAGCTGGGTGTGCTCCCCTCTCTGCC
GGGGGAAGGGAAGGGAGGGGAAGGGCAAGATTGGACCTGGAAACCGAGCG
CCGCACTCCTGGGGAGCGAGTACGGGGGCGAAGAGTTTTTCATCGAGGTC
GTCTCGGAGCGGCAAGACGCCTTCGCCTACTCGCAAGCCTTCACTGTCAG
GCCGTAGAGAGGGCCTGTGGAGGCAGGGTTTCACTGTTCTAGAAGGGTGC
GGGTGTCTGTGACCTGTCCGAGGCCCGCATGGCCTCCCTGCGTCCGCATT
GCTCGCCCGAGGGGAGGAGTTTGTGGAAGGTCAAGTGGTTAAAGTATCAT
TGTAGGTTTATCAAATGTCCAGAGAAACAAAGTACTGAGTGTTATAGGAG
AAATAGCGTTTCTAGGACCCAAGCGGTGAGTGTTGCATTAAAGTAGAAGG
GCTGTGAACGACAAGTGGAAATGCGCGCCTGCCGAACGTGTCAAAGTGCA
AACTTCACACGGGTGAAGTGAAGACAAGCGTGCCTTCTAGGCGTTGCCAA
GCGGTGACTAAATGCATGGGGATTAGAAAGAAAAAAAATACAGGTCC

Coding sequence (CDS) from alignment at KK037251.1:172072..173118-

>rna9037 ID=rna9037|Name=rna9037|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at KK037251.1:172072..173118- (Nannochloropsis gaditana)
GCGCCCCTCTCTGTGTCGAGGCCAGACCCCTCCCCCCCCTCCTCCCCCGC
GTCCTCCCGAGGCCCCTCCCTCCCTCCCTCCCCTAAGACCTCCTCCTCAT
TGGCTTCCCTTCTGCCGAGCCTCCGGTCGGATGGAGGGAATCGTCTGAGG
CAAGGAGGGCCCGACCCGTTGTCCACTATGTCCGGTTGGGTGGAGGACGG
GATCCCTTCAGCAATGCTCTACACGTCCTCTCCCATCGCCCCATTTTGGA
ACAGCAGCCGCACCAATGGTACGCGCCAGCCTCCTCCTGTTTCTTCCGCA
CGGAACGACCAAAGAGGGGGGGGAGACGCCCAGGCGGCAGAGGATGCGCC
CGGTCTGGCGAAGGCCCTGGTCCACCAGGTGAGGGTCGGCGACTCCTACA
CACTGATCTTGCATGCCTTTCCCCCCGCCCAGCTCTTGACCATTAACCTC
TTCCCGAAGCGCGGGCAAGGGGTGGAGCTGGGTGTGCTCCCCTCTCTGCC
GGGGGAAGGGAAGGGAGGGGAAGGGCAAGATTGGACCTGGAAACCGAGCG
CCGCACTCCTGGGGAGCGAGTACGGGGGCGAAGAGTTTTTCATCGAGGTC
GTCTCGGAGCGGCAAGACGCCTTCGCCTACTCGCAAGCCTTCACTGTCAG
GCCGTAG

Synonyms

Publications