EWM21666.1, cds9007 (CDS) Nannochloropsis gaditana

Overview
NameEWM21666.1
Unique Namecds9007
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:172462..173118 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21666.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101714g2.7091.mrna
GbkeyCDS
End range.
End range173118
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:172462..173118 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21666.1 vs. NCBI_GenBank
Match: gi|585101930|gb|EWM21666.1| (hypothetical protein Naga_101714g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 429.869 bits (1104), Expect = 4.039e-152
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 
Query:    1 APLSVSRPDPSPPSSPASSRGPSLPPSPKTSSSLASLLPSLRSDGGNRLRQGGPDPLSTMSGWVEDGIPSAMLYTSSPIAPFWNSSRTNGTRQPPPVSSARNDQRGGGDAQAAEDAPGLAKALVHQVRVGDSYTLILHAFPPAQLLTINLFPKRGQGVELGVLPSLPGEGKGGEGQDWTWKPSAALLGSEYGGEEFFIEVVSERQDAFAYSQAFTVRP 218
            APLSVSRPDPSPPSSPASSRGPSLPPSPKTSSSLASLLPSLRSDGGNRLRQGGPDPLSTMSGWVEDGIPSAMLYTSSPIAPFWNSSRTNGTRQPPPVSSARNDQRGGGDAQAAEDAPGLAKALVHQVRVGDSYTLILHAFPPAQLLTINLFPKRGQGVELGVLPSLPGEGKGGEGQDWTWKPSAALLGSEYGGEEFFIEVVSERQDAFAYSQAFTVRP
Sbjct:    1 APLSVSRPDPSPPSSPASSRGPSLPPSPKTSSSLASLLPSLRSDGGNRLRQGGPDPLSTMSGWVEDGIPSAMLYTSSPIAPFWNSSRTNGTRQPPPVSSARNDQRGGGDAQAAEDAPGLAKALVHQVRVGDSYTLILHAFPPAQLLTINLFPKRGQGVELGVLPSLPGEGKGGEGQDWTWKPSAALLGSEYGGEEFFIEVVSERQDAFAYSQAFTVRP 218
[Close]
BLAST of EWM21666.1 vs. NCBI_GenBank
Match: gi|585108908|gb|EWM26817.1| (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 74.7146 bits (182), Expect = 5.998e-12
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 0 
Query:  124 VHQVRV-----GDSYTLILHAFPPAQLLTINLFPKRGQGVELGV----LP---SLPGEGKGGEGQDWTWKPSAALLGSEYGGEEFFIEVVSERQDAFAYSQAFTV 216
            V QVRV     G SY LIL  FPP +LL++ L PK G+   LG+    LP   SLP        Q+WTW  S     +++   ++FIEV S+ QDAFAY+QAF +
Sbjct: 1185 VEQVRVFRVVMGKSYRLILRGFPPGRLLSLRLVPKEGRSTLLGMTMSSLPTASSLPFLSASTSSQEWTWSVSR----TKHEAGDYFIEVTSQTQDAFAYTQAFAL 1285
The following BLAST results are available for this feature:
BLAST of EWM21666.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101930|gb|EWM21666.1|4.039e-152100.00hypothetical protein Naga_101714g2, partial [Nanno... [more]
gi|585108908|gb|EWM26817.1|5.998e-1243.81Pectin lyase fold/virulence factor [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9037rna9037Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications