rna9034, rna9034 (mRNA) Nannochloropsis gaditana

Overview
Namerna9034
Unique Namerna9034
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1072
Alignment locationKK037251.1:161559..162719 +

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Properties
Property NameValue
Productcarboxyl-terminal protease
Orig transcript idgnl|cribi|Naga_100863g1.3402.mrna
Orig protein idgnl|cribi|Naga_100863g1.3402
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:161559..162719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100863g1gene8760Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9034rna9034-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21670.1cds9004Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9034 ID=rna9034|Name=rna9034|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp
CGATGCTGCTGACACGCGACTTCAACTGGCTTTCACGGCCCGACTGACAT
TTTCACCTCTCTAAACCCTTCTCTATTGGATAGGACGCCCTGCGACATCG
ACAATGGGTAGCGACGACGGTTTCTTTAGTCGTACCTTGGAAGGCGCCAT
GACGGGGGCCAGCGTTGGCGCGGTGGCCGGCACCATGAGCGGTTTCTGGA
ACTCCGCGGGAATCCGTTTTAACAGGGAGCAGGTGGCCCGCCAAGTCTTA
CCCACCATCTATAAAAACCTCGGATATCTAGCAGGGGTCGGCGCCAGCTA
CAGGGCGGGAGAGGCCTTGATGGAGACATGGACAGGGAAGGAAGGGGCGG
TGGTAAACACGGCTTTTGGCGGGGCGGTGAGCGGCGCTTTCATAGGCTTT
CGATCGGGGCATCCCACCGTGATGGTGGCCACGGCGGGCGCGTGCGCCTT
GGGTTGTGTGGCAATCCATTTGAATGGGAACAAGTTCGCGTAGGGGGGAA
AGGAAAGGGCGGGAGCGATGGAACGGGTGGGGGTTGCACGGGAACCGGGG
AAGGTAGATAGGGGCGACTCGGAAAGGATAGAGGGCTCGCCGAGGGAGGA
AGTATTGTAAGGCTTCTTCATCAAGGCATGAGAGAGGCCAATGGAACGGC
CAAGAGGAAGCGTCGCAATGAGGACCCGGACGCCAGTTTCGTTCGTGCGA
TTGTGTGAGCAGGAGATGCGGGATCTATATTGAATAATGTCAGCCGTGGG
CTGGGGTGGAATTTGAGTGGCACTGGCCATTACCTGAGAGAACGAAAGAA
CGAGAAAAACACTGAAAGCCATGTCATACAGGAGTGAGCGTTTCAAAATG
CTCTGGATCGCGGAGTTTGCCTGTCAAATCAAGTCGTTTGCGAGGAGACG
GGCGATGGGAGCGACTAGATAATGTTAGCACTGTCATGGTCCGTCCCGAC
GCCTTTTTATTTTTGGGATTCTTTTCCCCAAGGATTTCTTTGCGCACGTT
CGAATAGCTTGTCGCATATATTCCCAAAGAGTTTACACCAGCTGCACTCT
TGCGGTAAAACGCTGTTGTTCA
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protein sequence of rna9034

>rna9034-protein ID=rna9034-protein|Name=rna9034|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MSESERVPESPPSHACVQNPPILPNASFPANLQYFHRPASIHQGIMPKRR
IVAVLRPLPPVASVFVIGPLHILLLLLCLGFPASTAFHLHPPPSLLPSSP
SSAMHLPRAPSSRSYHPCPGGGGRPQTLKLASPGDADDPSPPSFPKLLRD
MFGRQNRVTAKRAPASSTRPPSSSRPLKVQPPAKKAFPWPPASSRSSSSS
SSSSSSPRPQTLPRNTEAGPTSSKSTGFQAPLGNLRPFVSDLTRRLQTPV
SLGPALTKLAFLSVGFLGGGASGLLLLLSPSSPLTSLPPSLLQPVTLFEN
ILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMREVGG
EGRGEGGR
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mRNA from alignment at KK037251.1:161559..162719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9034 ID=rna9034|Name=rna9034|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp|location=Sequence derived from alignment at KK037251.1:161559..162719+ (Nannochloropsis gaditana)
GGCGTGACGGCGTGTTGTTGGTGTGGCCGTGTCCATGTACTTATGAATTG
CGGCGGTCGTCGGATAGGACAGTTGGAATGCCCGCATGTCCGAGTCGGAG
CGTGTGCCCGAGTCTCCTCCGTCACATGCTTGCGTACAAAACCCGCCAAT
CCTCCCCaatgcctcctttcccgccaaCCTACAGTATTTCCACCGTCCGG
CCTCTATACACCAGGGAATCATGCCCAAGCGGAGAATTGTTGCCGtcctt
cgacccctccctcctgtcgccAGCGTGTTCGTCATtggccccctccacat
ccttctcctcctcctttgcctcggCTTTCCGGCCTCTaccgccttccacc
tccaccctccgccgtccTTGTTGCCGTCCAGCCCTTCGTCCGCCATGCAC
CTGCCACGTGCGCCGTCTTCACGGTCTTACCACCCCTGcccgggcggagg
cgggaggccACAGACCTTGAAGCTCGCTAGTCCCGGGGACGCTGACGACC
CGTCGCCCCCGTCGTTCCCGAAATTGTTAAGAGACATGTTCGGTCGTCAG
AACCGCGTCACGGCTAAACGTGCCCCGGCTTCTagcacccgccctccctc
ctcatcacggCCCCTGAAAGTCCAACCTCCCGCCAAGAAAGccttcccct
ggccccctgcttcctcccgctcctcctcttcctcttcctcctcctcctca
tctccccgcccccaaaCCCTGCCGCGCAACACGGAAGCTGGCCCTACCTC
CTCAAAGAGCACGGGCTTCCAGGCACCGCTGGGCAACCTACGGCCGTTCG
TTTCGGACCTGACGCGTCGTCTTCAGACCCCGGTCTCCCTCGGGCCCGCC
CTCACCAAGCTTGCCTTCCTGTCCGTGGGGTtcctgggcgggggagcgag
cgggctcctcctcctcctttccccctcctccccccttacttccctcccgc
cctccctcctccagcccgtcACCCTCTTCGAGAACATTCTCCTCGAGATC
GACCGGGGctatgtggaggaggtggacgaccAGAAGCTCTTTGAGTCCGC
GGTCGAGTCCATGCTCTCCAGTCTGGACCCGTACACTGAATTTGAGGGGG
AGCAACTCGCGCAGGACATgcgggaggtagggggggagggccggggggag
ggcgggaggga
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Coding sequence (CDS) from alignment at KK037251.1:161559..162719+

>rna9034 ID=rna9034|Name=rna9034|organism=Nannochloropsis gaditana|type=CDS|length=1076bp|location=Sequence derived from alignment at KK037251.1:161559..162719+ (Nannochloropsis gaditana)
ATGTCCGAGTCGGAGCGTGTGCCCGAGTCTCCTCCGTCACATGCTTGCGT
ACAAAACCCGCCAATCCTCCCCaatgcctcctttcccgccaaCCTACAGT
ATTTCCACCGTCCGGCCTCTATACACCAGGGAATCATGCCCAAGCGGAGA
ATTGTTGCCGtccttcgacccctccctcctgtcgccAGCGTGTTCGTCAT
tggccccctccacatccttctcctcctcctttgcctcggCTTTCCGGCCT
CTaccgccttccacctccaccctccgccgtccTTGTTGCCGTCCAGCCCT
TCGTCCGCCATGCACCTGCCACGTGCGCCGTCTTCACGGTCTTACCACCC
CTGcccgggcggaggcgggaggccACAGACCTTGAAGCTCGCTAGTCCCG
GGGACGCTGACGACCCGTCGCCCCCGTCGTTCCCGAAATTGTTAAGAGAC
ATGTTCGGTCGTCAGAACCGCGTCACGGCTAAACGTGCCCCGGCTTCTag
cacccgccctccctcctcatcacggCCCCTGAAAGTCCAACCTCCCGCCA
AGAAAGccttcccctggccccctgcttcctcccgctcctcctcttcctct
tcctcctcctcctcatctccccgcccccaaaCCCTGCCGCGCAACACGGA
AGCTGGCCCTACCTCCTCAAAGAGCACGGGCTTCCAGGCACCGCTGGGCA
ACCTACGGCCGTTCGTTTCGGACCTGACGCGTCGTCTTCAGACCCCGGTC
TCCCTCGGGCCCGCCCTCACCAAGCTTGCCTTCCTGTCCGTGGGGTtcct
gggcgggggagcgagcgggctcctcctcctcctttccccctcctcccccc
ttacttccctcccgccctccctcctccagcccgtcACCCTCTTCGAGAAC
ATTCTCCTCGAGATCGACCGGGGctatgtggaggaggtggacgaccAGAA
GCTCTTTGAGTCCGCGGTCGAGTCCATGCTCTCCAGTCTGGACCCGTACA
CTGAATTTGAGGGGGAGCAACTCGCGCAGGACATgcgggaggtagggggg
gagggccggggggagggcgggaggga
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Synonyms
Publications