EWM21670.1, cds9004 (CDS) Nannochloropsis gaditana

Overview
NameEWM21670.1
Unique Namecds9004
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:161644..162719 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21670.1
Productcarboxyl-terminal protease
Partialtrue
Orig transcript idgnl|cribi|Naga_100863g1.3402.mrna
GbkeyCDS
End range.
End range162719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:161644..162719 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|585101938|gb|EWM21670.1| (carboxyl-terminal protease, partial [Nannochloropsis gaditana])

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query:    1 MSESERVPESPPSHACVQNPPILPNASFPANLQYFHRPASIHQGIMPKRRIVAVLRPLPPVASVFVIGPLHILLLLLCLGFPASTAFHLHPPPSLLPSSPSSAMHLPRAPSSRSYHPCPGGGGRPQTLKLASPGDADDPSPPSFPKLLRDMFGRQNRVTAKRAPASSTRPPSSSRPLKVQPPAKKAFPWPPASSRSSSSSSSSSSSPRPQTLPRNTEAGPTSSKSTGFQAPLGNLRPFVSDLTRRLQTPVSLGPALTKLAFLSVGFLGGGASGLLLLLSPSSPLTSLPPSLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMREVGGEGRGEGGR 358
            MSESERVPESPPSHACVQNPPILPNASFPANLQYFHRPASIHQGIMPKRRIVAVLRPLPPVASVFVIGPLHILLLLLCLGFPASTAFHLHPPPSLLPSSPSSAMHLPRAPSSRSYHPCPGGGGRPQTLKLASPGDADDPSPPSFPKLLRDMFGRQNRVTAKRAPASSTRPPSSSRPLKVQPPAKKAFPWPPASSRSSSSSSSSSSSPRPQTLPRNTEAGPTSSKSTGFQAPLGNLRPFVSDLTRRLQTPVSLGPALTKLAFLSVGFLGGGASGLLLLLSPSSPLTSLPPSLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMREVGGEGRGEGGR
Sbjct:    1 MSESERVPESPPSHACVQNPPILPNASFPANLQYFHRPASIHQGIMPKRRIVAVLRPLPPVASVFVIGPLHILLLLLCLGFPASTAFHLHPPPSLLPSSPSSAMHLPRAPSSRSYHPCPGGGGRPQTLKLASPGDADDPSPPSFPKLLRDMFGRQNRVTAKRAPASSTRPPSSSRPLKVQPPAKKAFPWPPASSRSSSSSSSSSSSPRPQTLPRNTEAGPTSSKSTGFQAPLGNLRPFVSDLTRRLQTPVSLGPALTKLAFLSVGFLGGGASGLLLLLSPSSPLTSLPPSLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMREVGGEGRGEGGR 358          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|873232578|emb|CEM05181.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 85.5001 bits (210), Expect = 1.782e-14
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 0
Query:  239 VSDLTRRLQTPVSLGPALTKLAFLSVG-FLGGGASGLLLLLSPS-SPLTSLPPSLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMRE-VGGEGRGEG 356
            V  + R L  P    P +  L +  +G F+GG  SG++L      +P+  +   + + V LFE IL +++RGYVE+VD +KLF +AV +ML SLDPYTEFE  Q A D+RE V G   G G
Sbjct:  177 VEVMNRTLSVP---APDVRSLPWGGIGSFVGGAVSGVILTFGLLLAPVQMIDEPVRRSVALFETILTDVERGYVEKVDTEKLFNTAVTAMLRSLDPYTEFENLQAASDLRENVAGRYGGVG 294          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|298706117|emb|CBJ29210.1| (carboxy-terminal peptidase [Ectocarpus siliculosus])

HSP 1 Score: 83.5741 bits (205), Expect = 8.025e-14
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 0
Query:  259 LAFLSVGFLGGGASGLLLLLSPSSPLTSLPPSLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMREV-------------GGEGRGE 355
            +   + G L G A  + LL  P S L S  P L + +TLFEN+L++ID+GYVEEV+ ++L E+AV SML +LDPYTE++  Q A D++E              GG+ RGE
Sbjct:  252 VGIYAGGLLSGLALAVGLLTVPYSDLGS--PGLRKSLTLFENVLVDIDQGYVEEVNPERLLETAVGSMLRTLDPYTEYQNNQAAADLKETVSGRYGGVGLVISGGKQRGE 359          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|224004336|ref|XP_002295819.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585851|gb|ACI64536.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 76.6406 bits (187), Expect = 1.612e-11
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0
Query:  290 SLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMRE-VGGEGRGEG 356
            ++ QPV LFE IL +++  YV++VD QKLFE+ V++M SSLDPYTEFE  Q AQD+ E V G+  G G
Sbjct:  282 NINQPVILFETILNDLNDAYVDDVDIQKLFETGVKAMTSSLDPYTEFESRQEAQDLEESVSGKYGGVG 349          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|1210519557|dbj|GAX21681.1| (hypothetical protein FisN_29Hh122 [Fistulifera solaris])

HSP 1 Score: 75.0998 bits (183), Expect = 4.138e-11
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 0
Query:  285 TSLPPS-LLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMRE-VGGEGRGEG 356
            TS P + LLQPVTLFE IL ++D  YV+ VD Q+LF++ +++ML SLDPYTEFE ++ AQ++ E + G+  G G
Sbjct:  120 TSTPDTKLLQPVTLFETILSDLDSTYVDPVDTQQLFQTGIQAMLQSLDPYTEFEAKEEAQNVMESIDGKYGGVG 193          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|219128277|ref|XP_002184343.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404144|gb|EEC44092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.0998 bits (183), Expect = 4.690e-11
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0
Query:  265 GFLGGGASGLLLLLSPS-SPLTSLPPSLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMRE 347
            GFL    +G  L  +    P+ +   SL QPVTLFE IL ++++ YVEEVD  KLFE+ + +ML SLDPYTEFE  Q A  + E
Sbjct:  184 GFLVSFTAGAFLATAAIIYPIYASVESLSQPVTLFETILGDLEQAYVEEVDTNKLFETGIAAMLRSLDPYTEFEAAQEAVALTE 267          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|551643052|ref|XP_005824321.1| (hypothetical protein GUITHDRAFT_116454 [Guillardia theta CCMP2712] >gi|428168396|gb|EKX37341.1| hypothetical protein GUITHDRAFT_116454 [Guillardia theta CCMP2712])

HSP 1 Score: 71.633 bits (174), Expect = 5.091e-10
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 0
Query:  290 SLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMR 346
            S+++ V LFE+IL +ID GYVE+V  +KLFE+ V +ML SLDPYTEFE  + A++++
Sbjct:   96 SVVEDVALFEHILRDIDTGYVEKVSTEKLFETGVRAMLGSLDPYTEFENNKAAENLQ 152          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|1072231001|gb|OEU15734.1| (Peptidase_S41-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 70.0922 bits (170), Expect = 1.729e-9
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0
Query:  297 LFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMRE 347
            LFE IL ++DRGYV+ VD  KLFE+ V +ML SLDPYTEFE  + AQ M E
Sbjct:    2 LFETILADLDRGYVDPVDTNKLFETGVSAMLRSLDPYTEFEAREEAQQMNE 52          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|397568775|gb|EJK46335.1| (hypothetical protein THAOC_34996 [Thalassiosira oceanica])

HSP 1 Score: 67.3958 bits (163), Expect = 1.506e-8
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 0
Query:  293 QPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMRE-VGGEGRGEG 356
            QPV LFE IL +++  YV++VD QKLFE+ V++M +SLDPYTEFE    A ++ E V G+  G G
Sbjct:  134 QPVILFETILNDLNNAYVDDVDIQKLFETGVKAMTASLDPYTEFESRTEAMELEESVSGKYGGVG 198          
BLAST of EWM21670.1 vs. NCBI_GenBank
Match: gi|1210526413|dbj|GAX14901.1| (carboxyl-terminal processing protease [Fistulifera solaris])

HSP 1 Score: 67.0106 bits (162), Expect = 2.160e-8
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0
Query:  291 LLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEG--EQLAQDMREVGGEGRGEG 356
            L QPVTLFE IL +++  YV+ VD Q+LF++ +++ML SLDPYTEFE   E+    M  + G+  G G
Sbjct:  142 LFQPVTLFETILSDLETTYVDPVDTQQLFQTGIQAMLQSLDPYTEFEANKEEAQNVMESIDGKYGGVG 209          
The following BLAST results are available for this feature:
BLAST of EWM21670.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101938|gb|EWM21670.1|0.000e+0100.00carboxyl-terminal protease, partial [Nannochlorops... [more]
gi|873232578|emb|CEM05181.1|1.782e-1442.98unnamed protein product [Vitrella brassicaformis C... [more]
gi|298706117|emb|CBJ29210.1|8.025e-1443.64carboxy-terminal peptidase [Ectocarpus siliculosus... [more]
gi|224004336|ref|XP_002295819.1|1.612e-1155.88predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210519557|dbj|GAX21681.1|4.138e-1152.70hypothetical protein FisN_29Hh122 [Fistulifera sol... [more]
gi|219128277|ref|XP_002184343.1|4.690e-1148.81predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|551643052|ref|XP_005824321.1|5.091e-1054.39hypothetical protein GUITHDRAFT_116454 [Guillardia... [more]
gi|1072231001|gb|OEU15734.1|1.729e-962.75Peptidase_S41-domain-containing protein [Fragilari... [more]
gi|397568775|gb|EJK46335.1|1.506e-852.31hypothetical protein THAOC_34996 [Thalassiosira oc... [more]
gi|1210526413|dbj|GAX14901.1|2.160e-848.53carboxyl-terminal processing protease [Fistulifera... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9034rna9034Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications