rna9030, rna9030 (mRNA) Nannochloropsis gaditana

Overview
Namerna9030
Unique Namerna9030
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1074
Alignment locationKK037251.1:155686..156752 +

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Properties
Property NameValue
Product60s ribosomal protein l3
Orig transcript idgnl|cribi|Naga_100667g1.8081.mrna
Orig protein idgnl|cribi|Naga_100667g1.8081
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:155686..156752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100667g1gene8757Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9030rna9030-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21675.1cds9000Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9030 ID=rna9030|Name=rna9030|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp
ATGACCCGGTCACGCTATCATCACGGTGGTTGTCGACAACAACAACATCC
TCAAGGGCATCCAGGCGCCCTTCTTCTCGGAGCCGCGCTCGTGGGCACGG
CAGTGAGCAGATACATCAGACCACCTAGGCAAGAACTCTTGATAGTTCAG
CCACAACATGGCAACCCTGCCCCCACCTATATCCAAAATGCCGGCGCGAC
TTACATGTATATTGAAAGACCGAACCAGCATTTGCGTCAAATCGAGAATG
CTTCGCATTTAGTACCCCACGGCCCACCAGACTGGCGGCTAGCATGGCAC
TGTGATGTGTGTTTCGTCGCGTTCGGCCTCTTGACTCGGCGACACCACTG
TCGGAACTGTGGTCGCTCGCTGTGCAGTCGACATTCTGAAAAACGCGTTC
CCTTACCGCATTGGGGATACTTGAACTACGTCCGTGTCTGTGACAGGTGC
CACGGGGTTGTCATGGCCTGTTACCGTGCGGGGACGCCGTACTCGCCTTC
CATGTTGGCAATGCCAGCAGCCCGCGATTTGACTGCCGCAAACGGATCTT
TGGGTCACGGTGACAGAGGTTTTCTCCAAACGTCTGCGTGCAGCGAGGTT
CCCAGGGGCGACATCTTCTCGCACGGAACGAGCGTGACAGCTGAGGCAGT
GGCCCACGGGCCGCCGTTAGCGCGCGCTGGCTTGGGCCACGCCTTGCGTG
CGATACCAACCGCACCCTCAAGAAATGCCTTTGCAGGAGCAGTGTCCCGA
CCGGCCGCGGGCATTGGAGGGCCTATGAGGGAAACGGTTGCTTGTACATG
TGTGGGTGAGAGGCGGTGTAGTGACTGCAGGTGTCTCGTCTTCAGCCTTG
CCGCTTTTTCATGCATTGGCATCATGCTTGCCCGCCATGGGAGCATATTG
TACAGTCAAAAACGCTATTCTATTTTCCCCGCTCGTTGGCCTAAACGACT
GTCATCATTGACATGCAGCATGGCCATCCACATGCTTTCTGAAACTAACA
TTTTACAGGGAGGTAAAAGTATCACAACTGCATGGGCCTCGCATTTTCTC
GAAAAGTGCATTTCATTTTTTTAA
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protein sequence of rna9030

>rna9030-protein ID=rna9030-protein|Name=rna9030|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYK
AGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLR
TLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQR
IKDYADVVRVLAHTQIKKWTLPSPSSRR
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mRNA from alignment at KK037251.1:155686..156752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9030 ID=rna9030|Name=rna9030|organism=Nannochloropsis gaditana|type=mRNA|length=1067bp|location=Sequence derived from alignment at KK037251.1:155686..156752+ (Nannochloropsis gaditana)
ATGTCTCACCGTAAGTTTCGTGCCCCTCGTCACGGCTCCCTCGGCTTCCT
GGTACGTGCGTGAGGGCTTGTTATTGAGGTAGACTGCATCCTTCTACCTA
GCTCTCCGTGGCCTTTTGGGCTCCTCTACCCATAGTTGTGCCTGCTGATA
CTGATTCCAAATGCATTATTCCATTTGGTCACTACACCAATATCTACAGC
CCAAGAAGCGGACCAAGAAGCACCGCGGGAAAATCCGCTCTTTTCCCAAA
GATGACCCTGCCAAGCCCCCTCATCTGACGGCTTTCATGGCGTACAAGGC
CGGGATGACTCACGTGGTCCGGGAGGTTGACCGGTCGGGTTCGAAAATGC
ACAAGAAAGAGGTAGGTGCGAAGGCGACGCGTCGGCAGGGGGGCACgacg
gaaggaagaggggacaGAGACGGACTGGTTCAGTGGAGAGGATAGTGGCC
GGGGgcaggcgagagggaggctttTCAAGATTTGTGTACCGAAACTCACG
CGGGCACCGCTCGTCTGGTCCCTTTCAACCCCTTGCCTCACTCCTGTCCA
GGTCGTAGAAGCCGTGACCATTTTGGAAGCGCCTCCCATGAAGGTGGTGG
GTGTGGTCGGCTATGTGGCCACCCCCACGGGCCTTCGGACCCTGACGACC
GTTTGGGCGGAGCATCTCTCCGACGAGATCCGTCGCCGCTTCTACAAGAA
TTGGTACAAGTCTAAGAAGAAGGCCTTCACCAAGTACGCCAAGAAGTGGA
GCGAGGCCCCTGGCAAGGTATGTGCGTGGCGTCGGATCTGGGCCTGGTTG
ATCTCCAGCCGCTccagggggcggagggcgatgcTCGGCTTTCACGCGCC
AGTCTTCTCATTGtgtgttttcctccttgttttgcccaggtggaggaaga
gctccAGCGCATTAAGGACTACGCGGACGTGGTTCGAGTCCTTGCCCACA
CCCAGATTAAGAAGTTGAATCTGCGGCAGAAGAAGGCCCATATTTTGGAG
ATTCAAGTGAACGGCGGGGCGGTTGGGGACAAGGTGGACTTTGCCAAGTC
CCTCCTCGAGAAGGTag
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Coding sequence (CDS) from alignment at KK037251.1:155686..156752+

>rna9030 ID=rna9030|Name=rna9030|organism=Nannochloropsis gaditana|type=CDS|length=2685bp|location=Sequence derived from alignment at KK037251.1:155686..156752+ (Nannochloropsis gaditana)
ATGTCTCACCGTAAGTTTCGTGCCCCTCGTCACGGCTCCCTCGGCTTCCT
GCCCAAGAAGCGGACCAAGAAGCACCGCGGGAAAATCCGCTCTTTTCCCA
AAGATGACCCTGCCAAGCCCCCTCATCTGACGGCTTTCATGGCGTACAAG
GCCGGGATGACTCACGTGGTCCGGGAGGTTGACCGGTCGGGTTCGAAAAT
GCACAAGAAAGAGGTCGTAGAAGCCGTGACCATTTTGGAAGCGCCTCCCA
TGAAGGTGGTGGGTGTGGTCGGCTATGTGGCCACCCCCACGGGCCTTCGG
ACCCTGACGACCGTTTGGGCGGAGCATCTCTCCGACGAGATCCGTCGCCG
CTTCTACAAGAATTGGTACAAGTCTAAGAAGAAGGCCTTCACCAAGTACG
CCAAGAAGTGGAGCGAGGCCCCTGGCAAGgtggaggaagagctccAGCGC
ATTAAGGACTACGCGGACGTGGTTCGAGTCCTTGCCCACACCCAGATTAA
GAAGTGGACTTTGCCAAGTCCCTCCTCGAGAAGGTagATGTCTCACCGTA
AGTTTCGTGCCCCTCGTCACGGCTCCCTCGGCTTCCTGCCCAAGAAGCGG
ACCAAGAAGCACCGCGGGAAAATCCGCTCTTTTCCCAAAGATGACCCTGC
CAAGCCCCCTCATCTGACGGCTTTCATGGCGTACAAGGCCGGGATGACTC
ACGTGGTCCGGGAGGTTGACCGGTCGGGTTCGAAAATGCACAAGAAAGAG
GTCGTAGAAGCCGTGACCATTTTGGAAGCGCCTCCCATGAAGGTGGTGGG
TGTGGTCGGCTATGTGGCCACCCCCACGGGCCTTCGGACCCTGACGACCG
TTTGGGCGGAGCATCTCTCCGACGAGATCCGTCGCCGCTTCTACAAGAAT
TGGTACAAGTCTAAGAAGAAGGCCTTCACCAAGTACGCCAAGAAGTGGAG
CGAGGCCCCTGGCAAGgtggaggaagagctccAGCGCATTAAGGACTACG
CGGACGTGGTTCGAGTCCTTGCCCACACCCAGATTAAGAAGTGGACTTTG
CCAAGTCCCTCCTCGAGAAGGTagATGTCTCACCGTAAGTTTCGTGCCCC
TCGTCACGGCTCCCTCGGCTTCCTGCCCAAGAAGCGGACCAAGAAGCACC
GCGGGAAAATCCGCTCTTTTCCCAAAGATGACCCTGCCAAGCCCCCTCAT
CTGACGGCTTTCATGGCGTACAAGGCCGGGATGACTCACGTGGTCCGGGA
GGTTGACCGGTCGGGTTCGAAAATGCACAAGAAAGAGGTCGTAGAAGCCG
TGACCATTTTGGAAGCGCCTCCCATGAAGGTGGTGGGTGTGGTCGGCTAT
GTGGCCACCCCCACGGGCCTTCGGACCCTGACGACCGTTTGGGCGGAGCA
TCTCTCCGACGAGATCCGTCGCCGCTTCTACAAGAATTGGTACAAGTCTA
AGAAGAAGGCCTTCACCAAGTACGCCAAGAAGTGGAGCGAGGCCCCTGGC
AAGgtggaggaagagctccAGCGCATTAAGGACTACGCGGACGTGGTTCG
AGTCCTTGCCCACACCCAGATTAAGAAGTGGACTTTGCCAAGTCCCTCCT
CGAGAAGGTagATGTCTCACCGTAAGTTTCGTGCCCCTCGTCACGGCTCC
CTCGGCTTCCTGCCCAAGAAGCGGACCAAGAAGCACCGCGGGAAAATCCG
CTCTTTTCCCAAAGATGACCCTGCCAAGCCCCCTCATCTGACGGCTTTCA
TGGCGTACAAGGCCGGGATGACTCACGTGGTCCGGGAGGTTGACCGGTCG
GGTTCGAAAATGCACAAGAAAGAGGTCGTAGAAGCCGTGACCATTTTGGA
AGCGCCTCCCATGAAGGTGGTGGGTGTGGTCGGCTATGTGGCCACCCCCA
CGGGCCTTCGGACCCTGACGACCGTTTGGGCGGAGCATCTCTCCGACGAG
ATCCGTCGCCGCTTCTACAAGAATTGGTACAAGTCTAAGAAGAAGGCCTT
CACCAAGTACGCCAAGAAGTGGAGCGAGGCCCCTGGCAAGgtggaggaag
agctccAGCGCATTAAGGACTACGCGGACGTGGTTCGAGTCCTTGCCCAC
ACCCAGATTAAGAAGTGGACTTTGCCAAGTCCCTCCTCGAGAAGGTagAT
GTCTCACCGTAAGTTTCGTGCCCCTCGTCACGGCTCCCTCGGCTTCCTGC
CCAAGAAGCGGACCAAGAAGCACCGCGGGAAAATCCGCTCTTTTCCCAAA
GATGACCCTGCCAAGCCCCCTCATCTGACGGCTTTCATGGCGTACAAGGC
CGGGATGACTCACGTGGTCCGGGAGGTTGACCGGTCGGGTTCGAAAATGC
ACAAGAAAGAGGTCGTAGAAGCCGTGACCATTTTGGAAGCGCCTCCCATG
AAGGTGGTGGGTGTGGTCGGCTATGTGGCCACCCCCACGGGCCTTCGGAC
CCTGACGACCGTTTGGGCGGAGCATCTCTCCGACGAGATCCGTCGCCGCT
TCTACAAGAATTGGTACAAGTCTAAGAAGAAGGCCTTCACCAAGTACGCC
AAGAAGTGGAGCGAGGCCCCTGGCAAGgtggaggaagagctccAGCGCAT
TAAGGACTACGCGGACGTGGTTCGAGTCCTTGCCCACACCCAGATTAAGA
AGTGGACTTTGCCAAGTCCCTCCTCGAGAAGGTag
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Synonyms
Publications