EWM21675.1, cds9000 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|585101945|gb|EWM21675.1| (60s ribosomal protein l3 [Nannochloropsis gaditana]) HSP 1 Score: 361.688 bits (927), Expect = 1.751e-126 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTLPSPSSRR 178 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTLPSPSSRR Sbjct: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTLPSPSSRR 178
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|552918194|gb|ESA03143.1| (hypothetical protein GLOINDRAFT_86003 [Rhizophagus irregularis DAOM 181602] >gi|595481778|gb|EXX69704.1| ribosomal 60S subunit protein L3 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 283.493 bits (724), Expect = 1.516e-92 Identity = 130/168 (77.38%), Postives = 151/168 (89.88%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKK 168 MSHRKF APRHGSLGFLP+KR ++HRGK++SFPKDDP+KP HLTAFM YKAGMTH+VR++DR SKMHKKE+VEAVTI+E PP+K+VGVVGYV TP GLRTLTTVWAEHLSDE++RRFYKNWYKSKKKAFTKYAKK+SE +++ EL+RIK Y VVRVL HTQI+K Sbjct: 1 MSHRKFEAPRHGSLGFLPRKRARRHRGKVKSFPKDDPSKPVHLTAFMGYKAGMTHIVRDLDRPNSKMHKKEIVEAVTIIETPPLKIVGVVGYVETPRGLRTLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKYSEQNKEIDTELERIKKYCQVVRVLVHTQIRK 168
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|673017858|ref|XP_008862890.1| (60S ribosomal protein [Aphanomyces invadans] >gi|574482093|gb|ETW09085.1| 60S ribosomal protein [Aphanomyces invadans]) HSP 1 Score: 282.722 bits (722), Expect = 1.754e-91 Identity = 134/171 (78.36%), Postives = 151/171 (88.30%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171 MSHRKF APRHG+LGFLPKKRTK HRG+IR FP+DDP KP LTAFM YKAGMTH+VREV+R GSK+HKKE+VEAVTI+E PPM VVGVVGY+ TP GLRTLTTVWAEHLS+E+RRRFYKNWYKSKKKAFTKYAKK++E P ++E EL RIK YA VVRV+AHTQI+K L Sbjct: 63 MSHRKFEAPRHGNLGFLPKKRTKHHRGRIRKFPRDDPTKPCKLTAFMGYKAGMTHIVREVERPGSKVHKKEIVEAVTIVETPPMIVVGVVGYLETPRGLRTLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYAKKYAEKPAEIENELNRIKKYAQVVRVIAHTQIRKVKL 233
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|751682994|gb|KIM33147.1| (hypothetical protein M408DRAFT_149681 [Serendipita vermifera MAFF 305830]) HSP 1 Score: 275.404 bits (703), Expect = 2.683e-89 Identity = 132/173 (76.30%), Postives = 150/173 (86.71%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK--VEEELQRIKDYADVVRVLAHTQIKKWTL 171 MSHRK+ APRHGSLGFLP+KR +HRGK++SFPKDDP KP HLTA + YKAGMTHVVR++DR GSKMHKKEVVEAVTI+E PP+ VVGVVGYV TP GLRTLTTVWA HLSDE++RRFYKNWY+SKKKAFTKYAKK SEA G+ +E EL+RI+ Y VVRVLAHTQI+K L Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTATLGYKAGMTHVVRDLDRPGSKMHKKEVVEAVTIIETPPLMVVGVVGYVETPRGLRTLTTVWATHLSDEVKRRFYKNWYRSKKKAFTKYAKKMSEAAGQKSIERELERIRKYCTVVRVLAHTQIRKTGL 173
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|1173942082|gb|OQR91137.1| (60S ribosomal protein L3 [Thraustotheca clavata]) HSP 1 Score: 275.018 bits (702), Expect = 3.561e-89 Identity = 128/171 (74.85%), Postives = 147/171 (85.96%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171 MSHRKF APRHG+LGFLPKKRTK HRG+IR FP+DD KP HLTAFM YKAGMTH+VREVDR GSK+HKKE+VEAVTILE PP+ VVG+VGY+ TP GLRTLTTVWA LS+++RRRFYKNWYKSKKKAFTKYAKK +E P ++E EL R+K Y V+RV+AHTQI+K L Sbjct: 1 MSHRKFEAPRHGNLGFLPKKRTKHHRGRIRKFPRDDRTKPVHLTAFMGYKAGMTHIVREVDRPGSKLHKKEIVEAVTILETPPLVVVGIVGYLETPRGLRTLTTVWAAQLSEDVRRRFYKNWYKSKKKAFTKYAKKHTEKPNEIENELNRMKKYCQVIRVIAHTQIRKVKL 171
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|646293517|gb|KDQ14690.1| (hypothetical protein BOTBODRAFT_32448 [Botryobasidium botryosum FD-172 SS1]) HSP 1 Score: 273.092 bits (697), Expect = 1.866e-88 Identity = 131/172 (76.16%), Postives = 149/172 (86.63%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK-VEEELQRIKDYADVVRVLAHTQIKKWTL 171 MSHRK+ APRHGSLGFLP+KR +HRGK++SFPKDDP KP HLTA M YKAGMTHVVR++DR GSKMHK+EVVEAVTI+E PPM VVGVVGYV TP GLRTLTTVWAEHLSDE++RRFYKNWY+SKKKAFT+YAKK +E GK + EL+RI+ Y VVRVLAHTQI+K L Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAIMGYKAGMTHVVRDLDRPGSKMHKREVVEAVTIVETPPMIVVGVVGYVETPRGLRTLTTVWAEHLSDELKRRFYKNWYRSKKKAFTRYAKKHAEDGGKSISRELERIRKYCTVVRVLAHTQIRKTGL 172
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|675196845|ref|XP_008907307.1| (60S ribosomal protein L3 [Phytophthora parasitica INRA-310] >gi|568092745|gb|ETN07550.1| 60S ribosomal protein L3 [Phytophthora parasitica INRA-310]) HSP 1 Score: 272.322 bits (695), Expect = 3.859e-88 Identity = 127/171 (74.27%), Postives = 146/171 (85.38%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171 M HRKF APRHG LGFLPKKRTK HRG++R FP+DD +K PHLTAFM YKAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+ AP +E EL RIK Y VVRVLAHTQI+K L Sbjct: 1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQIRKVKL 171
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|599103697|ref|XP_007381993.1| (60S ribosomal protein L3 [Punctularia strigosozonata HHB-11173 SS5] >gi|390601087|gb|EIN10481.1| 60S ribosomal protein L3 [Punctularia strigosozonata HHB-11173 SS5]) HSP 1 Score: 272.322 bits (695), Expect = 3.954e-88 Identity = 131/172 (76.16%), Postives = 149/172 (86.63%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK-VEEELQRIKDYADVVRVLAHTQIKKWTL 171 MSHRK+ APRHGSLGFLP+KR +HRGK++SFPKDDP KP HLTA M YKAGMTHVVR++DR GSKMHK+EVVEAVTI+E PPM VVGVVGYV TP GLRTLTTVWA HLSDE++RRFYKNWY+SKKKAFT+YAKK +E GK V+ EL+RI+ Y VVRVLAHTQI+K L Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAVMGYKAGMTHVVRDLDRPGSKMHKREVVEAVTIVETPPMIVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKNWYRSKKKAFTRYAKKAAEDNGKSVQRELERIRKYCTVVRVLAHTQIRKTGL 172
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|648169853|gb|KDR83483.1| (hypothetical protein GALMADRAFT_235646 [Galerina marginata CBS 339.88]) HSP 1 Score: 272.322 bits (695), Expect = 3.998e-88 Identity = 131/172 (76.16%), Postives = 148/172 (86.05%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK-VEEELQRIKDYADVVRVLAHTQIKKWTL 171 MSHRKF APRHGSLGFLP+KR +HRGK++SFPKDDP KP HLTA M YKAGMTHVVR+++R GSKMHK+EVVEAVTI+E PPM VVGVVGYV TP GLRTLTTVWA HLSDE++RRFYKNWY+SKKKAFT+YAKK +E GK V EL+RI+ Y VVRVLAHTQI+K L Sbjct: 1 MSHRKFEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAIMGYKAGMTHVVRDLERPGSKMHKREVVEAVTIIETPPMIVVGVVGYVETPRGLRTLTTVWASHLSDEVKRRFYKNWYRSKKKAFTRYAKKHAEDSGKSVARELERIRKYCTVVRVLAHTQIRKTGL 172
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|566020998|gb|ETI43909.1| (60S ribosomal protein [Phytophthora parasitica P1569] >gi|567958368|gb|ETK83957.1| 60S ribosomal protein [Phytophthora parasitica] >gi|567987058|gb|ETL37372.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568016356|gb|ETL90533.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568046697|gb|ETM43802.1| 60S ribosomal protein [Phytophthora parasitica] >gi|570324616|gb|ETO72564.1| 60S ribosomal protein [Phytophthora parasitica P1976] >gi|570948476|gb|ETP13733.1| 60S ribosomal protein [Phytophthora parasitica CJ01A1] >gi|570981368|gb|ETP41800.1| 60S ribosomal protein [Phytophthora parasitica P10297] >gi|970637840|gb|KUF81666.1| 60S ribosomal protein L3 [Phytophthora nicotianae]) HSP 1 Score: 272.322 bits (695), Expect = 4.350e-88 Identity = 127/171 (74.27%), Postives = 146/171 (85.38%), Query Frame = 0 Query: 1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171 M HRKF APRHG LGFLPKKRTK HRG++R FP+DD +K PHLTAFM YKAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+ AP +E EL RIK Y VVRVLAHTQI+K L Sbjct: 1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQIRKVKL 171 The following BLAST results are available for this feature:
BLAST of EWM21675.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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