EWM21675.1, cds9000 (CDS) Nannochloropsis gaditana

Overview
NameEWM21675.1
Unique Namecds9000
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:155686..155736 +
Alignment locationKK037251.1:155885..156046 +
Alignment locationKK037251.1:156237..156452 +
Alignment locationKK037251.1:156575..156648 +
Alignment locationKK037251.1:156719..156752 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21675.1
Product60s ribosomal protein l3
Orig transcript idgnl|cribi|Naga_100667g1.8081.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:155686..155736 +
KK037251.1supercontigKK037251.1:155885..156046 +
KK037251.1supercontigKK037251.1:156237..156452 +
KK037251.1supercontigKK037251.1:156575..156648 +
KK037251.1supercontigKK037251.1:156719..156752 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR000597Ribosomal_L3
Homology
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|585101945|gb|EWM21675.1| (60s ribosomal protein l3 [Nannochloropsis gaditana])

HSP 1 Score: 361.688 bits (927), Expect = 1.751e-126
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTLPSPSSRR 178
            MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTLPSPSSRR
Sbjct:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTLPSPSSRR 178          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|552918194|gb|ESA03143.1| (hypothetical protein GLOINDRAFT_86003 [Rhizophagus irregularis DAOM 181602] >gi|595481778|gb|EXX69704.1| ribosomal 60S subunit protein L3 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 283.493 bits (724), Expect = 1.516e-92
Identity = 130/168 (77.38%), Postives = 151/168 (89.88%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKK 168
            MSHRKF APRHGSLGFLP+KR ++HRGK++SFPKDDP+KP HLTAFM YKAGMTH+VR++DR  SKMHKKE+VEAVTI+E PP+K+VGVVGYV TP GLRTLTTVWAEHLSDE++RRFYKNWYKSKKKAFTKYAKK+SE   +++ EL+RIK Y  VVRVL HTQI+K
Sbjct:    1 MSHRKFEAPRHGSLGFLPRKRARRHRGKVKSFPKDDPSKPVHLTAFMGYKAGMTHIVRDLDRPNSKMHKKEIVEAVTIIETPPLKIVGVVGYVETPRGLRTLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKYSEQNKEIDTELERIKKYCQVVRVLVHTQIRK 168          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|673017858|ref|XP_008862890.1| (60S ribosomal protein [Aphanomyces invadans] >gi|574482093|gb|ETW09085.1| 60S ribosomal protein [Aphanomyces invadans])

HSP 1 Score: 282.722 bits (722), Expect = 1.754e-91
Identity = 134/171 (78.36%), Postives = 151/171 (88.30%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171
            MSHRKF APRHG+LGFLPKKRTK HRG+IR FP+DDP KP  LTAFM YKAGMTH+VREV+R GSK+HKKE+VEAVTI+E PPM VVGVVGY+ TP GLRTLTTVWAEHLS+E+RRRFYKNWYKSKKKAFTKYAKK++E P ++E EL RIK YA VVRV+AHTQI+K  L
Sbjct:   63 MSHRKFEAPRHGNLGFLPKKRTKHHRGRIRKFPRDDPTKPCKLTAFMGYKAGMTHIVREVERPGSKVHKKEIVEAVTIVETPPMIVVGVVGYLETPRGLRTLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYAKKYAEKPAEIENELNRIKKYAQVVRVIAHTQIRKVKL 233          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|751682994|gb|KIM33147.1| (hypothetical protein M408DRAFT_149681 [Serendipita vermifera MAFF 305830])

HSP 1 Score: 275.404 bits (703), Expect = 2.683e-89
Identity = 132/173 (76.30%), Postives = 150/173 (86.71%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK--VEEELQRIKDYADVVRVLAHTQIKKWTL 171
            MSHRK+ APRHGSLGFLP+KR  +HRGK++SFPKDDP KP HLTA + YKAGMTHVVR++DR GSKMHKKEVVEAVTI+E PP+ VVGVVGYV TP GLRTLTTVWA HLSDE++RRFYKNWY+SKKKAFTKYAKK SEA G+  +E EL+RI+ Y  VVRVLAHTQI+K  L
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTATLGYKAGMTHVVRDLDRPGSKMHKKEVVEAVTIIETPPLMVVGVVGYVETPRGLRTLTTVWATHLSDEVKRRFYKNWYRSKKKAFTKYAKKMSEAAGQKSIERELERIRKYCTVVRVLAHTQIRKTGL 173          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|1173942082|gb|OQR91137.1| (60S ribosomal protein L3 [Thraustotheca clavata])

HSP 1 Score: 275.018 bits (702), Expect = 3.561e-89
Identity = 128/171 (74.85%), Postives = 147/171 (85.96%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171
            MSHRKF APRHG+LGFLPKKRTK HRG+IR FP+DD  KP HLTAFM YKAGMTH+VREVDR GSK+HKKE+VEAVTILE PP+ VVG+VGY+ TP GLRTLTTVWA  LS+++RRRFYKNWYKSKKKAFTKYAKK +E P ++E EL R+K Y  V+RV+AHTQI+K  L
Sbjct:    1 MSHRKFEAPRHGNLGFLPKKRTKHHRGRIRKFPRDDRTKPVHLTAFMGYKAGMTHIVREVDRPGSKLHKKEIVEAVTILETPPLVVVGIVGYLETPRGLRTLTTVWAAQLSEDVRRRFYKNWYKSKKKAFTKYAKKHTEKPNEIENELNRMKKYCQVIRVIAHTQIRKVKL 171          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|646293517|gb|KDQ14690.1| (hypothetical protein BOTBODRAFT_32448 [Botryobasidium botryosum FD-172 SS1])

HSP 1 Score: 273.092 bits (697), Expect = 1.866e-88
Identity = 131/172 (76.16%), Postives = 149/172 (86.63%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK-VEEELQRIKDYADVVRVLAHTQIKKWTL 171
            MSHRK+ APRHGSLGFLP+KR  +HRGK++SFPKDDP KP HLTA M YKAGMTHVVR++DR GSKMHK+EVVEAVTI+E PPM VVGVVGYV TP GLRTLTTVWAEHLSDE++RRFYKNWY+SKKKAFT+YAKK +E  GK +  EL+RI+ Y  VVRVLAHTQI+K  L
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAIMGYKAGMTHVVRDLDRPGSKMHKREVVEAVTIVETPPMIVVGVVGYVETPRGLRTLTTVWAEHLSDELKRRFYKNWYRSKKKAFTRYAKKHAEDGGKSISRELERIRKYCTVVRVLAHTQIRKTGL 172          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|675196845|ref|XP_008907307.1| (60S ribosomal protein L3 [Phytophthora parasitica INRA-310] >gi|568092745|gb|ETN07550.1| 60S ribosomal protein L3 [Phytophthora parasitica INRA-310])

HSP 1 Score: 272.322 bits (695), Expect = 3.859e-88
Identity = 127/171 (74.27%), Postives = 146/171 (85.38%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171
            M HRKF APRHG LGFLPKKRTK HRG++R FP+DD +K PHLTAFM YKAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP  +E EL RIK Y  VVRVLAHTQI+K  L
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQIRKVKL 171          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|599103697|ref|XP_007381993.1| (60S ribosomal protein L3 [Punctularia strigosozonata HHB-11173 SS5] >gi|390601087|gb|EIN10481.1| 60S ribosomal protein L3 [Punctularia strigosozonata HHB-11173 SS5])

HSP 1 Score: 272.322 bits (695), Expect = 3.954e-88
Identity = 131/172 (76.16%), Postives = 149/172 (86.63%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK-VEEELQRIKDYADVVRVLAHTQIKKWTL 171
            MSHRK+ APRHGSLGFLP+KR  +HRGK++SFPKDDP KP HLTA M YKAGMTHVVR++DR GSKMHK+EVVEAVTI+E PPM VVGVVGYV TP GLRTLTTVWA HLSDE++RRFYKNWY+SKKKAFT+YAKK +E  GK V+ EL+RI+ Y  VVRVLAHTQI+K  L
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAVMGYKAGMTHVVRDLDRPGSKMHKREVVEAVTIVETPPMIVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKNWYRSKKKAFTRYAKKAAEDNGKSVQRELERIRKYCTVVRVLAHTQIRKTGL 172          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|648169853|gb|KDR83483.1| (hypothetical protein GALMADRAFT_235646 [Galerina marginata CBS 339.88])

HSP 1 Score: 272.322 bits (695), Expect = 3.998e-88
Identity = 131/172 (76.16%), Postives = 148/172 (86.05%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGK-VEEELQRIKDYADVVRVLAHTQIKKWTL 171
            MSHRKF APRHGSLGFLP+KR  +HRGK++SFPKDDP KP HLTA M YKAGMTHVVR+++R GSKMHK+EVVEAVTI+E PPM VVGVVGYV TP GLRTLTTVWA HLSDE++RRFYKNWY+SKKKAFT+YAKK +E  GK V  EL+RI+ Y  VVRVLAHTQI+K  L
Sbjct:    1 MSHRKFEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAIMGYKAGMTHVVRDLERPGSKMHKREVVEAVTIIETPPMIVVGVVGYVETPRGLRTLTTVWASHLSDEVKRRFYKNWYRSKKKAFTRYAKKHAEDSGKSVARELERIRKYCTVVRVLAHTQIRKTGL 172          
BLAST of EWM21675.1 vs. NCBI_GenBank
Match: gi|566020998|gb|ETI43909.1| (60S ribosomal protein [Phytophthora parasitica P1569] >gi|567958368|gb|ETK83957.1| 60S ribosomal protein [Phytophthora parasitica] >gi|567987058|gb|ETL37372.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568016356|gb|ETL90533.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568046697|gb|ETM43802.1| 60S ribosomal protein [Phytophthora parasitica] >gi|570324616|gb|ETO72564.1| 60S ribosomal protein [Phytophthora parasitica P1976] >gi|570948476|gb|ETP13733.1| 60S ribosomal protein [Phytophthora parasitica CJ01A1] >gi|570981368|gb|ETP41800.1| 60S ribosomal protein [Phytophthora parasitica P10297] >gi|970637840|gb|KUF81666.1| 60S ribosomal protein L3 [Phytophthora nicotianae])

HSP 1 Score: 272.322 bits (695), Expect = 4.350e-88
Identity = 127/171 (74.27%), Postives = 146/171 (85.38%), Query Frame = 0
Query:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVEEELQRIKDYADVVRVLAHTQIKKWTL 171
            M HRKF APRHG LGFLPKKRTK HRG++R FP+DD +K PHLTAFM YKAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP  +E EL RIK Y  VVRVLAHTQI+K  L
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQIRKVKL 171          
The following BLAST results are available for this feature:
BLAST of EWM21675.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101945|gb|EWM21675.1|1.751e-126100.0060s ribosomal protein l3 [Nannochloropsis gaditana... [more]
gi|552918194|gb|ESA03143.1|1.516e-9277.38hypothetical protein GLOINDRAFT_86003 [Rhizophagus... [more]
gi|673017858|ref|XP_008862890.1|1.754e-9178.3660S ribosomal protein [Aphanomyces invadans] >gi|5... [more]
gi|751682994|gb|KIM33147.1|2.683e-8976.30hypothetical protein M408DRAFT_149681 [Serendipita... [more]
gi|1173942082|gb|OQR91137.1|3.561e-8974.8560S ribosomal protein L3 [Thraustotheca clavata][more]
gi|646293517|gb|KDQ14690.1|1.866e-8876.16hypothetical protein BOTBODRAFT_32448 [Botryobasid... [more]
gi|675196845|ref|XP_008907307.1|3.859e-8874.2760S ribosomal protein L3 [Phytophthora parasitica ... [more]
gi|599103697|ref|XP_007381993.1|3.954e-8876.1660S ribosomal protein L3 [Punctularia strigosozona... [more]
gi|648169853|gb|KDR83483.1|3.998e-8876.16hypothetical protein GALMADRAFT_235646 [Galerina m... [more]
gi|566020998|gb|ETI43909.1|4.350e-8874.2760S ribosomal protein [Phytophthora parasitica P15... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9030rna9030Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications