rna9026, rna9026 (mRNA) Nannochloropsis gaditana

Overview
Namerna9026
Unique Namerna9026
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1450
Alignment locationKK037251.1:144255..145019 +

Link to JBrowse

Properties
Property NameValue
Productsmall rna degrading nuclease 5-like protein
Orig transcript idgnl|cribi|Naga_102384g1.9982.mrna
Orig protein idgnl|cribi|Naga_102384g1.9982
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:144255..145019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102384g1gene8752Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9026rna9026-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21677.1cds8996Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9026 ID=rna9026|Name=rna9026|organism=Nannochloropsis gaditana|type=mRNA|length=1450bp
GCGGGGACGGTGGTGATGTGTGTTTTGAAACATGGGGTTCTCGATGATTG
ACAAATTGCACCGCCTTGACTGCTATTAACAGGTCATCGCGATGCCCACA
AGAAAAGGGAAAAAAAAAAACAAACACGATGATTGCCAAGTTCCATCACC
TCCCATGGCTCCAGCCACTTCCAAGCACCAAGGGGACCGCAACGTCCAAC
AAGATGACCCAGCCCACTCACTATTACACACAAATAAAACACTTTTGCGC
CCTCACATGCCACGTTTAAGCCATGCCCCGCAGGGCGGGCTACTTCCTGA
CCCGGCCCCCTACCTGAAGTCTCCTTACCCCCCTCCTCCATCTCCACCGC
ATCCTCCCCCGTACCTAAACCACGCATCGCTGCGACGCAATCCGAGGGGG
GCGCGCGGCAGAAGCGGTCGAGGCTTGAGACTTCCTCTCCACGAGCCGCA
CGCCGACGCCTCTGTCTCTTCCTCTTCTTCAGTGCCACCCTCCCGGCACC
CTCTCCACAGTCCAGTCCGTTCAATCGGCAAGAAACGCCCAAGACACGAT
ACGTCAACTGCCCTCCCCCATCTCTCATTATCTTCCCCTATCACCTCCAG
TTCCGCCGCCGCCCCTTCTCCACACGGGCCCCACCGACGCCATTCCTTCC
CTACCTCCCCCCCCTTCCAAACACATCACCGCCAATTTCACGCCTCCGCC
CCACCTCCTTCCCGTCCCGCAAGCGTTCCACGTCAGCGACAAGCAAAGCC
CCCGTCGAGAGGCGCTCCTCAGGCAGGGAAACCGACCGGACCGCCGCTGT
TAAACGTGTATCTCTCCCCGCAGGAAGGGACGGAAGGCGCGGGGGAGGGC
GGGGTCGAGGGCGTGGAGCTGGGCTTCAATTATTGGGTGCATGAGCGTAC
CAAAGTCCTGGGAGCGGACGTGGCAAGGACCATCCTCTGCGTTCTCCCCC
CTCGACTTCGCCATCCAACCGATGCGGCGGCGCCAGCCCTCCCTCCCTCC
CTCCCTCCCCCCCTCCCTCCCTTCCTCCGACCCGGGACCCTGGCCGATGC
GCGCCGGGTGGTCGTGGTGAATGTTACTGGCCTCTCACCTTCGGACGCGG
TCCGGGACCTCCACCCCTCCCTCGCCCCCTTCCTCACCTCGCTCTCCTCC
GTGCCGATCCGATACACGGCTACGCACGACGCCAACCCCCGACCCGACCA
TTTGCTGTCCGCGGCGGCGTCCTTGCTATGGCTCCCGCCCTCCCTCCCGC
CCTCCCTCCCGCCCTCCCTTCCGCCTGCCTTCCCTCGGGGCGGGGGCTCG
GCGCGGTGTTGCAGGAGCACGAGGTCGTTTTGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGAAGGGAGGGAGGGAAGGCGCTGGGTGCTCCGACCGCGCGC
GTCGGAGGAGATGGAGGCGGTTTCCACGAGCGAAGAGAGCGAGGTGGAGG
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protein sequence of rna9026

>rna9026-protein ID=rna9026-protein|Name=rna9026|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLA
SVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLY
PHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLK
MTQAPGFAIPEAWAEGGREGGREGGEEPLFGCMRGATEGKGRSVGGAGD
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mRNA from alignment at KK037251.1:144255..145019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9026 ID=rna9026|Name=rna9026|organism=Nannochloropsis gaditana|type=mRNA|length=765bp|location=Sequence derived from alignment at KK037251.1:144255..145019+ (Nannochloropsis gaditana)
cccccgcctctggGGCTTGGACTGCGAGATGTGCCTGACCGAGGCGGGAC
TCGAACTCACGCGGCTCACGCTGGTGGATGAAATGGGCCGCGTCATCCTG
GACGAGCTCGTGCGTCCTTCCACGCCCATCATCGATTATTTGACCGCCTA
CAGCGGCAtcacccccgcctccctcgcgtcagtcaccaccaccctccctt
ccctccagcccaccctcctggccctcctcgccgaagCCCCTACCTACCTG
GTCGGCCACGGCCTGGAAGGCGACCTCCGCGCCCTCCGGATCCATCACCC
GTACCTGATCGACACCGCCGTCCTCTACCCCCACCCAAAGGGGGCGCCGT
ACAAGCGCTCGCTGAAGGATTTGGCGAAGGATCTCctggacgggcgggag
gtgcAAGCGGGCCACGGTAGCAGCGGGCACGATTCCTACCAGGACGCAGT
GACGGCGCTGGAGCTGGCTTTGTTGAAGATGACCCAAGCGCCGGGGTTCG
CGATCCCGGAGgcgtgggcggagggcgggagggagggcgggagggagggc
ggggaggagcccTTGTTTGGGTGCgtggcgcgggaggggaggcgggtcGT
GGTGGTCGGTCCCCGGGAGGGTTGGGCattggggggaggaagggaaggag
ggcgggagggagggagggaaggagggaaggacaagggggccTCGGTCTCG
TGGGCAGTTGCATGCGAGGGGCTAccgaagggaagggacgcaGTGTGGGT
GGCGCAGGAGATTAA
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Coding sequence (CDS) from alignment at KK037251.1:144255..145019+

>rna9026 ID=rna9026|Name=rna9026|organism=Nannochloropsis gaditana|type=CDS|length=1200bp|location=Sequence derived from alignment at KK037251.1:144255..145019+ (Nannochloropsis gaditana)
ATGTGCCTGACCGAGGCGGGACTCGAACTCACGCGGCTCACGCTGGTGGA
TGAAATGGGCCGCGTCATCCTGGACGAGCTCGTGCGTCCTTCCACGCCCA
TCATCGATTATTTGACCGCCTACAGCGGCAtcacccccgcctccctcgcg
tcagtcaccaccaccctcccttccctccagcccaccctcctggccctcct
cgccgaagCCCCTACCTACCTGGTCGGCCACGGCCTGGAAGGCGACCTCC
GCGCCCTCCGGATCCATCACCCGTACCTGATCGACACCGCCGTCCTCTAC
CCCCACCCAAAGGGGGCGCCGTACAAGCGCTCGCTGAAGGATTTGGCGAA
GGATCTCctggacgggcgggaggtgcAAGCGGGCCACGGTAGCAGCGGGC
ACGATTCCTACCAGGACGCAGTGACGGCGCTGGAGCTGGCTTTGTTGAAG
ATGACCCAAGCGCCGGGGTTCGCGATCCCGGAGgcgtgggcggagggcgg
gagggagggcgggagggagggcggggaggagcccTTGTTTGGTTGCATGC
GAGGGGCTAccgaagggaagggacgcaGTGTGGGTGGCGCAGGAGATTAA
ATGTGCCTGACCGAGGCGGGACTCGAACTCACGCGGCTCACGCTGGTGGA
TGAAATGGGCCGCGTCATCCTGGACGAGCTCGTGCGTCCTTCCACGCCCA
TCATCGATTATTTGACCGCCTACAGCGGCAtcacccccgcctccctcgcg
tcagtcaccaccaccctcccttccctccagcccaccctcctggccctcct
cgccgaagCCCCTACCTACCTGGTCGGCCACGGCCTGGAAGGCGACCTCC
GCGCCCTCCGGATCCATCACCCGTACCTGATCGACACCGCCGTCCTCTAC
CCCCACCCAAAGGGGGCGCCGTACAAGCGCTCGCTGAAGGATTTGGCGAA
GGATCTCctggacgggcgggaggtgcAAGCGGGCCACGGTAGCAGCGGGC
ACGATTCCTACCAGGACGCAGTGACGGCGCTGGAGCTGGCTTTGTTGAAG
ATGACCCAAGCGCCGGGGTTCGCGATCCCGGAGgcgtgggcggagggcgg
gagggagggcgggagggagggcggggaggagcccTTGTTTGGTTGCATGC
GAGGGGCTAccgaagggaagggacgcaGTGTGGGTGGCGCAGGAGATTAA
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Synonyms
Publications