EWM21677.1, cds8996 (CDS) Nannochloropsis gaditana

Overview
NameEWM21677.1
Unique Namecds8996
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:144283..144824 +
Alignment locationKK037251.1:144962..145019 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21677.1
Productsmall rna degrading nuclease 5-like protein
Orig transcript idgnl|cribi|Naga_102384g1.9982.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:144283..144824 +
KK037251.1supercontigKK037251.1:144962..145019 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR006055Exonuclease
Homology
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|585101950|gb|EWM21677.1| (small rna degrading nuclease 5-like protein [Nannochloropsis gaditana])

HSP 1 Score: 394.815 bits (1013), Expect = 5.930e-139
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAWAEGGREGGREGGEEPLFGCMRGATEGKGRSVGGAGD 199
            MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAWAEGGREGGREGGEEPLFGCMRGATEGKGRSVGGAGD
Sbjct:    1 MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAWAEGGREGGREGGEEPLFGCMRGATEGKGRSVGGAGD 199          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|1002215825|gb|KXT10906.1| (hypothetical protein AC579_3483 [Pseudocercospora musae])

HSP 1 Score: 170.629 bits (431), Expect = 8.533e-46
Identity = 89/168 (52.98%), Postives = 113/168 (67.26%), Query Frame = 0
Query:    1 MCLTEAG------LELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEA 162
            MC+T           LTR++LVD  G+V+LDELV+P+ PI DYLTAYSGITP  L +VTTTL  +Q  LL++L    T LVGH L  DL AL+I HPY+IDTA+LYPHP+G P K SLK L +  L  RE+Q GHGS+GH+S +DA   L+L  LK  +   +  P+A
Sbjct:  396 MCITSPKGITPQVFSLTRVSLVDWDGQVVLDELVKPAKPITDYLTAYSGITPTMLENVTTTLSDIQKKLLSILTPQ-TILVGHSLNSDLNALQITHPYIIDTALLYPHPRGPPLKSSLKWLCQKYL-SREIQKGHGSTGHNSVEDAKAVLDLVKLKTEKGKAWGTPDA 561          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|631371966|ref|XP_007920363.1| (hypothetical protein MYCFIDRAFT_75369 [Pseudocercospora fijiensis CIRAD86] >gi|452987766|gb|EME87521.1| hypothetical protein MYCFIDRAFT_75369 [Pseudocercospora fijiensis CIRAD86])

HSP 1 Score: 169.474 bits (428), Expect = 1.835e-45
Identity = 96/205 (46.83%), Postives = 121/205 (59.02%), Query Frame = 0
Query:    1 MCLTEAG------LELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAWAEGGREGGREGGEEPLFGCMRGATEGKGRSVGGAGD 199
            MC+T           LTR++LVD  G+V+LDELV+P  PI DYLTAYSGITP  L +VTTTL  +Q  L +++    T LVGH L  DL AL+I HPY+IDTA+LYPHP+G P K SLK L +  L  RE+Q GHGS+GH S +DA   L+L  LK  +   +  PEA            G E +F  +  +   K   V  AGD
Sbjct:  384 MCITSPKGVTPQVFSLTRVSLVDWDGQVVLDELVKPENPITDYLTAYSGITPTILENVTTTLGDIQKELSSIITPQ-TILVGHSLNSDLNALQITHPYIIDTALLYPHPRGPPLKSSLKWLCQKYL-SREIQKGHGSTGHSSVEDAKAVLDLVKLKTEKGKVWGTPEA------------GSESIFKRLSRSIRPKRDKVNAAGD 574          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|1179903545|emb|SLM37677.1| (Ribonuclease H-like domain [Umbilicaria pustulata])

HSP 1 Score: 169.474 bits (428), Expect = 3.960e-45
Identity = 87/166 (52.41%), Postives = 114/166 (68.67%), Query Frame = 0
Query:    1 MCLTEAG-LELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAWAE 165
            MC T+ G L+LTR+++V   G V++DELV+P  PIIDYLT YSGITP  L  VTTTL  +Q  LL LL    T L+GH L  DL AL+I HP+++DT++LY HP+G P K SLK LA+  L+ RE+Q GHG+ GHDS +DA+T L+L  +K  +   + I EA  E
Sbjct:  380 MCKTQGGNLDLTRISIVGWDGSVVMDELVKPEKPIIDYLTPYSGITPTKLNPVTTTLADIQSRLLELLTPE-TILIGHSLNADLSALKITHPFIVDTSILYQHPRGPPLKSSLKWLAQKFLN-REIQKGHGTRGHDSIEDAITCLDLVKMKCEKGVKWGISEASGE 543          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|1002200332|gb|KXS96205.1| (hypothetical protein AC578_2827 [Mycosphaerella eumusae])

HSP 1 Score: 167.933 bits (424), Expect = 6.366e-45
Identity = 88/168 (52.38%), Postives = 110/168 (65.48%), Query Frame = 0
Query:    1 MCLTEAG------LELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEA 162
            MC+T           LTR++LVD  G+V+LDELV+P  PI DY+TAYSGITP  L +VTTTL  +Q  L  +L    T LVGH L  DL AL+I HPY+IDTA+LYPHP+G P K SLK L +  L  RE+Q GHGS+GH+S +DA   L+L  LK  +   +  PEA
Sbjct:  347 MCITSPKGVTPQVFSLTRVSLVDWDGQVVLDELVKPENPITDYVTAYSGITPTLLENVTTTLSDIQKKLSGILTPQ-TILVGHSLNSDLNALQITHPYIIDTALLYPHPRGPPLKSSLKWLCQKYL-SREIQKGHGSTGHNSVEDAKAVLDLVKLKAEKGKAWGTPEA 512          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|1044587904|ref|XP_017431138.1| (PREDICTED: small RNA degrading nuclease 5 isoform X1 [Vigna angularis])

HSP 1 Score: 163.31 bits (412), Expect = 1.665e-44
Identity = 85/163 (52.15%), Postives = 109/163 (66.87%), Query Frame = 0
Query:    1 MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAW 163
            MC+T  G ELTR+TLVD  G+V++D LV+PS  IIDY T +SGITP  L  VTT+L  +Q   L  + E  T LVGH LE DL AL+I H  +IDTAVLY HP+G  +K++L+ LAK  L  RE+Q    ++GHDS +DA   LELALLK+   P F  P ++
Sbjct:  135 MCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLNGVTTSLRDIQELFLKFVYEE-TILVGHSLENDLLALKISHELIIDTAVLYRHPRGTSHKKALRFLAKKFL-AREIQ--QSTNGHDSIEDARATLELALLKIRNGPDFGSPPSF 293          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|565458758|ref|XP_006287378.1| (hypothetical protein CARUB_v10000580mg [Capsella rubella] >gi|482556084|gb|EOA20276.1| hypothetical protein CARUB_v10000580mg [Capsella rubella])

HSP 1 Score: 164.851 bits (416), Expect = 1.846e-44
Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 0
Query:    1 MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIP 160
            MC T+ GLELTR+TLVD  G+V+LD+LV+P+ PI DY T YSGIT   +  VTTTL  +Q   L L+ +  T LVGH LE DL +L+I H  +IDTAVLY HP+G  YK  L+ LAK  L  RE+Q     SGHDS +DA  A++LALLK+   P F +P
Sbjct:  225 MCFTKEGLELTRVTLVDVQGQVLLDKLVKPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKE-TILVGHSLENDLFSLKISHNLVIDTAVLYKHPRGRSYKTKLRILAKKFL-AREIQLSE--SGHDSAEDAKAAMDLALLKIKHGPDFGLP 380          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|1044587906|ref|XP_017431139.1| (PREDICTED: small RNA degrading nuclease 5 isoform X2 [Vigna angularis])

HSP 1 Score: 162.925 bits (411), Expect = 2.062e-44
Identity = 85/163 (52.15%), Postives = 109/163 (66.87%), Query Frame = 0
Query:    1 MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAW 163
            MC+T  G ELTR+TLVD  G+V++D LV+PS  IIDY T +SGITP  L  VTT+L  +Q   L  + E  T LVGH LE DL AL+I H  +IDTAVLY HP+G  +K++L+ LAK  L  RE+Q    ++GHDS +DA   LELALLK+   P F  P ++
Sbjct:  134 MCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLNGVTTSLRDIQELFLKFVYE-ETILVGHSLENDLLALKISHELIIDTAVLYRHPRGTSHKKALRFLAKKFL-AREIQ--QSTNGHDSIEDARATLELALLKIRNGPDFGSPPSF 292          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|1148915262|ref|XP_020127200.1| (exonuclease [Diplodia corticola] >gi|1103744432|gb|OJD30940.1| exonuclease [Diplodia corticola])

HSP 1 Score: 165.622 bits (418), Expect = 4.806e-44
Identity = 87/163 (53.37%), Postives = 109/163 (66.87%), Query Frame = 0
Query:    1 MCLT-EAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEA 162
            MC T E   ELTR+++VD  G V+LDELV+P  PI DYLT YSGIT   L  VTTTLP +Q  LL ++    T LVGH L  DL AL++ HP+++DT+ LYPHP+G P K SLK LA+  L  +E+Q GHGSSGHDS +DA + LEL   K  + P +   EA
Sbjct:  322 MCKTGEQDFELTRISVVDWDGGVVLDELVKPERPITDYLTPYSGITEDMLKDVTTTLPDIQKRLLEIITPQ-TILVGHSLNSDLNALKMTHPFIVDTSFLYPHPRGRPLKCSLKWLAQKYL-SKEIQKGHGSSGHDSVEDARSTLELVKQKCEKGPLWGTSEA 482          
BLAST of EWM21677.1 vs. NCBI_GenBank
Match: gi|460384034|ref|XP_004237720.1| (PREDICTED: small RNA degrading nuclease 5 [Solanum lycopersicum])

HSP 1 Score: 162.925 bits (411), Expect = 7.940e-44
Identity = 87/162 (53.70%), Postives = 112/162 (69.14%), Query Frame = 0
Query:    1 MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEA 162
            MC+T  G ELTR+TLVD  G+V+LD+LV+PS  IIDY T YSGIT   L  VTTTL  +Q   L L+ +  T LVGH LE DL +L+I+H  +IDTAVLY HP+G+ YK +L+ L++  L GRE+Q     +GHDS +DA   LELALLK+   P F IP++
Sbjct:  222 MCITSEGFELTRVTLVDVEGQVMLDKLVKPSNDIIDYNTRYSGITCQMLEDVTTTLKDIQEEFLKLVHKE-TILVGHSLENDLLSLKINHKLVIDTAVLYKHPRGS-YKAALRVLSRKFL-GREIQ--DSDNGHDSVEDAKATLELALLKIKNGPDFGIPQS 378          
The following BLAST results are available for this feature:
BLAST of EWM21677.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101950|gb|EWM21677.1|5.930e-139100.00small rna degrading nuclease 5-like protein [Nanno... [more]
gi|1002215825|gb|KXT10906.1|8.533e-4652.98hypothetical protein AC579_3483 [Pseudocercospora ... [more]
gi|631371966|ref|XP_007920363.1|1.835e-4546.83hypothetical protein MYCFIDRAFT_75369 [Pseudocerco... [more]
gi|1179903545|emb|SLM37677.1|3.960e-4552.41Ribonuclease H-like domain [Umbilicaria pustulata][more]
gi|1002200332|gb|KXS96205.1|6.366e-4552.38hypothetical protein AC578_2827 [Mycosphaerella eu... [more]
gi|1044587904|ref|XP_017431138.1|1.665e-4452.15PREDICTED: small RNA degrading nuclease 5 isoform ... [more]
gi|565458758|ref|XP_006287378.1|1.846e-4453.75hypothetical protein CARUB_v10000580mg [Capsella r... [more]
gi|1044587906|ref|XP_017431139.1|2.062e-4452.15PREDICTED: small RNA degrading nuclease 5 isoform ... [more]
gi|1148915262|ref|XP_020127200.1|4.806e-4453.37exonuclease [Diplodia corticola] >gi|1103744432|gb... [more]
gi|460384034|ref|XP_004237720.1|7.940e-4453.70PREDICTED: small RNA degrading nuclease 5 [Solanum... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9026rna9026Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications