rna9014, rna9014 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9014
Unique Name	rna9014
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1963
Alignment location	KK037251.1:108905..110968 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100939g1.2052.mrna
Orig protein id	gnl\|cribi\|Naga_100939g1.2052
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:108905..110968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100939g1	gene8740	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9014	rna9014-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21689.1	cds8984	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:108905..110968+
coding sequence from alignment at KK037251.1:108905..110968+

mRNA sequence

>rna9014 ID=rna9014|Name=rna9014|organism=Nannochloropsis gaditana|type=mRNA|length=1963bp
CGAACGGAAGACGAAAAAAAACGAAAAAAACGAAAAGCAACCACAATCGC
TGCCCGTTCCCTCGGCCCCCACATGCTTTCCAAGCTTAACGACGCTTTCA
CACGGGGTAAGTCACGATCGTGACTGCTTAATTAAAATTTTCGGGCATAT
TCCTCCCCCCCCGAATAAAAGCCGTACGCACGCCTAGCCCGCAAGGGCTG
TCAGAGACCAAGCCCGGATAAAATGAGAAGGGGGGTGATGGAATGCCTGC
TACGATCACGGCATTGTCAAGCTGTGATGTATCCTGTGCATCACGTGACG
CGCAGGACAGCTTGCAGGTCTTCCCTTTTGCACACGCGGACGTTTCTTCC
TTTTCCCTGCCCTCGTGACACCTCCTACAGAGAAATACGTGTCCTACCGG
GCTCCGACATAAGCTCTGATTCCAAGTCCCTGTGACGAATGTCGGTTCTG
CCATTTTCTCCACGGACACACCTCGCACACTCACGGTAAAATGGTAGCTC
GGACTGCTGTGGACAATGGCTTGCAGCTCTCCACCACGCCATTTATTTAC
ATGTACCATCCCCTGTCTTCGCCCCTCACAACCCCCCGCCCGCTGAAGCC
ACCAGATGCGAGCTACCCAGCTTTTTTCTCAGCAGGGGGGCAGCAAGCTA
CTCGATTGGCTGCATTGGATATGTACACCTGCTATGTAGCTTCTCACGCG
CACGTTTTTCGCTTACTCCTCAAGTACCCCCCAGCACTCTCCTTTTCCTC
TTCCTCTCCTTCGCCGCCAAGCCATCTCCGCCTCCTACAACACGTCGCTG
TCGATCGTCTCCTCCCACCTCCCTCCTCCTTCACCCCTTCACGTCCTCAT
CCCGGCTCGGAAATTCAATCGCTCGCTCTACATCCCGACAAGACGCGTCT
CGCTGCCATCAACAGCATGGCCACCGTCCACCTGTATTCCCTCCCAACCT
CGTCATCCCTCCCTACCTCGCCCCCGACCTCCCTCCCTTCCCCCGCCCCT
CCCGGCAATTTTCCATTATTTGGTTGGGCCGGTCTTGCCTTCCATCCTCA
TAACCCCTCCCGCCTGGCCACCGTGCGTGCCTACGGCCAAACCCTAGCCT
TCCTCGACCTCACCACCTCCTCCCTCCCTGTCTCCTCCTCCCCACCTTCT
TCCCATCACCTCTGCGACGTTCCCACATCCCTCTTATACCTTCCCTCCTC
ACTCTCCCCCCTCCTGGCCGTGGCAGAAGGGTCCTCTTTCTCCCTCTGGG
ATGAGAGGGATGCGCATCCCTGTATCGCACGCGAGCAACCCCTACCCTTA
ACCCGGATCCGGGCACTGGGGAGGGAGGGAGGAAGAGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAAGGCTTGCTGGTGGCAGGCGAGGATGGTG
TGCTGATGCGGTACGACCTTCGATGCTTGTCGCGGCCGGTGGAGCGGACG
AGGGAGGGAGGGGGGAAGGGAGGGAGGGAAGGAGGGCGGGAGGGAGGGAA
GGAGGGAGGGAACGTGAGGTCTTTGGTCTTGCGCTGTCAGGCTCGATGGC
GGGCGCCTGTGAAGCACAACATTATCGCTCTCTTTTTCGCTGGAAGGAAG
CGAGGGAGGGAAGGAGGAAAGGAGGGAGGGAGGGAGGGAGGGGGCGAGGA
GCTACTTGGCTGGGATGGACAGCGAGCTGCTGAGGTGTTCGCCCCCATAG
GGAGGGAGGAAGGGGGGGAGGAGGGGGGGAGGGGAGAGACCGAAGCGAAA
ACGCGGACGGAGGGACAAAGCCGACGAACGTTGGAAGGAGGGCGGGAAGG
AGGGCGGGACGGAGGGCGGGACGGAGAGCGGGAGGGAGGACGTGTGCGCG
GCCAATCCAGACGACGCCTTTCCACGCCCTCCACCGAGGGAAAGCTCGCA
AGGAGAGGAGGGCGCTCGTCTTGACACACAAGAGGAAAGGAGGGAAGGAC
GAGGGAGGAAGAG

protein sequence of rna9014

>rna9014-protein ID=rna9014-protein|Name=rna9014|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MTSACLPAPPKSLRFIGFCLAVHCLAQAFIFPTRSFSSLPRAVAPVTRRS
AAFIELGEKTRGGGGSDEEGGSLDGRSRGGGGGGGRATVITERAWNTSTL
GTLPSDLESLSSSICDCALTAIANGEMGLTVHAGGEFDPRNRYHDPYQLT
SLVVGLAGKLSVLGATRVLFSGPEALESSLDHMRQFIQLEAQKEQEELAT
VKQVRQEVQAKFPGTKLPEMPAEMAKEKLVRLRERQRLADRVLFGSLLGD
YRLTGDNMMDLETAPSRVFGEIDLDQDRLFIVVAPGNSPVVRSA

mRNA from alignment at KK037251.1:108905..110968+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9014 ID=rna9014|Name=rna9014|organism=Nannochloropsis gaditana|type=mRNA|length=2064bp|location=Sequence derived from alignment at KK037251.1:108905..110968+ (Nannochloropsis gaditana)
TGCCATGTGTATTTTGTGGGCACGGTCGACTCAgcaggaaggtggggagc
aGTGGAGCGACTGAAAAAGGGGCAGGTTATGAGACACGCAAATTACCGTC
TTTCACTGTTCCACAAGCCTGCCGCGCGTTCATATCACACGAGGGTGCGC
TTAAAGCATGTGTATGAAGCATTGTGCTTTCATGGCATGTGTCGTGGAAT
GGTGGCGCCTGAAGTCACGAGGAAAACGGTATCGGCAGCACCGTGAGAGT
TCTTGCTCAAATGGAGCCCACTTTCGGGCAatattttcccctccaccacg
cacCGTACAGACAAGCGGTGAAACGCAAGCATCAGGGAGAAATAAAACAC
AGTATTTACCCACTACCGTCGGCTTTTAGCTGTTCACCATGACAAGCGCC
TGTCTTCCGGCGCCCCCCAAGTCGCTTCGCTTTATCGGCTTCTGCCTTGC
CGTGCACTGTCTCGCTCAAGCCTTTATTTTCCCCACACgatctttttctt
cccttcctcgcgctGTGGCCCCTGTGACGCGGCGATCCGCTGCTTTCATT
GAGCTGGGAGAAAAAacgcgaggggggggagggagcgatgaggagggagg
gtcccTCGATGGCCGAagccgagggggagggggagggggaggacgggcaa
cAGTCATCACCGAACGGGCATGGAACACGAGTACCTTGGGAACGCTACCT
TCGGATTTGGAGAGCTTGAGTTCATCCGTAAGTAGGACCCAGgagagggc
cgggggagggggggcgagagaaggcgctgaaggagggaagggggagccTC
CCGTAAGCCAGTACGCGCGACGTCCTAGTCCTGCATTCAAAGTCCTCTGC
AGAGTTGACAGCggccttcatcctccctctcaccccctcctttcttactc
ccccctccttccagatcTGTGACTGCGCCCTGACGGCCATCGCCAACGGG
GAGATGGGCTTGACTGTCCATGCCGGGGGGGAATTCGACCCTCGGAACCG
ATACCACGATCCCTACCAGCTCACCTCTCTGGTGGTGGGACTGGCCGGGA
AGCTCTCTGTCCTGGGTGCCACGCGCGTCTTGTTCAGCGGGCCCGAGGCG
TTGGAAAGCAGCCTGGACCACATGCGGCAATTCATCCAATTGGTACGTTt
gccccgcccttttccGGTCTTTTCCggtccctcttctctccccttgcgTT
CTTCTTGTGCGCGCCCTCCAACGGCCACACGTCCTACTCCTTTTGCGGTC
CCTGCCCTCCGCCCGTTTCGCCCTCCTATTAACGGTTTCGCTCTTTTATT
AACGGTTTCGCTCTGTGATAAACGGCCTTCGGTTGGGGTGCGCACACGCT
CTGCCCTGGATTATCGTCGGACTCAacgtttctccctccctccctgcctc
cctccctcccttccatccatCTCCGTGTAGGAGGCGCAGAAGGAGCAAGA
AGAGCTGGCCACCGTCAAGCAAGTAAGGCAGGAGGTTCAGGCCAAGTTCC
CAGGCACGAAATTGCCGGAGATGCCCGCGGAAATGGCGAAAGAGAAggtg
ccgagggagggccagggggaagggcgggcgggtgggagggagggcggggt
gtgATTGACCGCAACCGGGATGACATGCAAACGGGCATGCGTCCTTtaca
gggggggaaggcgcgaTGCTGACAGCAGTAACCTTAACTTTGGATACCCT
CTTCAACCTCTCTGTCCACAGTTGGTCCGTTTGCGGGAGCGACAACGTCT
GGCAGATCGAGTTCTCTTTGGCTCCCTCCTGGGTGACTACCGCTTAACAG
Gtactttttttctccctccctccttccctccctccttccctccctccttt
cccctttcctccctccctcccttcctccccccctccctcgctcccttcct
cacggatgccctcgccctttccccccgctcTCTTCCCTGATAGGAGACAA
CATGATGGATTTGGAGACGGCGCCCTCTCGGGTTTTCGGAGAAATCGATC
TCGACCAGGACCGGCTCTTTATCGTCGTGGCCCCTGGGAACAGCCCAGTG
GTGCGTTCCGCCTT

Coding sequence (CDS) from alignment at KK037251.1:108905..110968+

>rna9014 ID=rna9014|Name=rna9014|organism=Nannochloropsis gaditana|type=CDS|length=4420bp|location=Sequence derived from alignment at KK037251.1:108905..110968+ (Nannochloropsis gaditana)
ATGACAAGCGCCTGTCTTCCGGCGCCCCCCAAGTCGCTTCGCTTTATCGG
CTTCTGCCTTGCCGTGCACTGTCTCGCTCAAGCCTTTATTTTCCCCACAC
gatctttttcttcccttcctcgcgctGTGGCCCCTGTGACGCGGCGATCC
GCTGCTTTCATTGAGCTGGGAGAAAAAacgcgaggggggggagggagcga
tgaggagggagggtcccTCGATGGCCGAagccgagggggagggggagggg
gaggacgggcaacAGTCATCACCGAACGGGCATGGAACACGAGTACCTTG
GGAACGCTACCTTCGGATTTGGAGAGCTTGAGTTCATCCatcTGTGACTG
CGCCCTGACGGCCATCGCCAACGGGGAGATGGGCTTGACTGTCCATGCCG
GGGGGGAATTCGACCCTCGGAACCGATACCACGATCCCTACCAGCTCACC
TCTCTGGTGGTGGGACTGGCCGGGAAGCTCTCTGTCCTGGGTGCCACGCG
CGTCTTGTTCAGCGGGCCCGAGGCGTTGGAAAGCAGCCTGGACCACATGC
GGCAATTCATCCAATTGGAGGCGCAGAAGGAGCAAGAAGAGCTGGCCACC
GTCAAGCAAGTAAGGCAGGAGGTTCAGGCCAAGTTCCCAGGCACGAAATT
GCCGGAGATGCCCGCGGAAATGGCGAAAGAGAAgTTGGTCCGTTTGCGGG
AGCGACAACGTCTGGCAGATCGAGTTCTCTTTGGCTCCCTCCTGGGTGAC
TACCGCTTAACAGGAGACAACATGATGGATTTGGAGACGGCGCCCTCTCG
GGTTTTCGGAGAAATCGATCTCGACCAGGACCGGCTCTTTATCGTCGTGG
CCCCTGGGAACAGCCCAGTGGTGCGTTCCGCCTTATGACAAGCGCCTGTC
TTCCGGCGCCCCCCAAGTCGCTTCGCTTTATCGGCTTCTGCCTTGCCGTG
CACTGTCTCGCTCAAGCCTTTATTTTCCCCACACgatctttttcttccct
tcctcgcgctGTGGCCCCTGTGACGCGGCGATCCGCTGCTTTCATTGAGC
TGGGAGAAAAAacgcgaggggggggagggagcgatgaggagggagggtcc
cTCGATGGCCGAagccgagggggagggggagggggaggacgggcaacAGT
CATCACCGAACGGGCATGGAACACGAGTACCTTGGGAACGCTACCTTCGG
ATTTGGAGAGCTTGAGTTCATCCatcTGTGACTGCGCCCTGACGGCCATC
GCCAACGGGGAGATGGGCTTGACTGTCCATGCCGGGGGGGAATTCGACCC
TCGGAACCGATACCACGATCCCTACCAGCTCACCTCTCTGGTGGTGGGAC
TGGCCGGGAAGCTCTCTGTCCTGGGTGCCACGCGCGTCTTGTTCAGCGGG
CCCGAGGCGTTGGAAAGCAGCCTGGACCACATGCGGCAATTCATCCAATT
GGAGGCGCAGAAGGAGCAAGAAGAGCTGGCCACCGTCAAGCAAGTAAGGC
AGGAGGTTCAGGCCAAGTTCCCAGGCACGAAATTGCCGGAGATGCCCGCG
GAAATGGCGAAAGAGAAgTTGGTCCGTTTGCGGGAGCGACAACGTCTGGC
AGATCGAGTTCTCTTTGGCTCCCTCCTGGGTGACTACCGCTTAACAGGAG
ACAACATGATGGATTTGGAGACGGCGCCCTCTCGGGTTTTCGGAGAAATC
GATCTCGACCAGGACCGGCTCTTTATCGTCGTGGCCCCTGGGAACAGCCC
AGTGGTGCGTTCCGCCTTATGACAAGCGCCTGTCTTCCGGCGCCCCCCAA
GTCGCTTCGCTTTATCGGCTTCTGCCTTGCCGTGCACTGTCTCGCTCAAG
CCTTTATTTTCCCCACACgatctttttcttcccttcctcgcgctGTGGCC
CCTGTGACGCGGCGATCCGCTGCTTTCATTGAGCTGGGAGAAAAAacgcg
aggggggggagggagcgatgaggagggagggtcccTCGATGGCCGAagcc
gagggggagggggagggggaggacgggcaacAGTCATCACCGAACGGGCA
TGGAACACGAGTACCTTGGGAACGCTACCTTCGGATTTGGAGAGCTTGAG
TTCATCCatcTGTGACTGCGCCCTGACGGCCATCGCCAACGGGGAGATGG
GCTTGACTGTCCATGCCGGGGGGGAATTCGACCCTCGGAACCGATACCAC
GATCCCTACCAGCTCACCTCTCTGGTGGTGGGACTGGCCGGGAAGCTCTC
TGTCCTGGGTGCCACGCGCGTCTTGTTCAGCGGGCCCGAGGCGTTGGAAA
GCAGCCTGGACCACATGCGGCAATTCATCCAATTGGAGGCGCAGAAGGAG
CAAGAAGAGCTGGCCACCGTCAAGCAAGTAAGGCAGGAGGTTCAGGCCAA
GTTCCCAGGCACGAAATTGCCGGAGATGCCCGCGGAAATGGCGAAAGAGA
AgTTGGTCCGTTTGCGGGAGCGACAACGTCTGGCAGATCGAGTTCTCTTT
GGCTCCCTCCTGGGTGACTACCGCTTAACAGGAGACAACATGATGGATTT
GGAGACGGCGCCCTCTCGGGTTTTCGGAGAAATCGATCTCGACCAGGACC
GGCTCTTTATCGTCGTGGCCCCTGGGAACAGCCCAGTGGTGCGTTCCGCC
TTATGACAAGCGCCTGTCTTCCGGCGCCCCCCAAGTCGCTTCGCTTTATC
GGCTTCTGCCTTGCCGTGCACTGTCTCGCTCAAGCCTTTATTTTCCCCAC
ACgatctttttcttcccttcctcgcgctGTGGCCCCTGTGACGCGGCGAT
CCGCTGCTTTCATTGAGCTGGGAGAAAAAacgcgaggggggggagggagc
gatgaggagggagggtcccTCGATGGCCGAagccgagggggagggggagg
gggaggacgggcaacAGTCATCACCGAACGGGCATGGAACACGAGTACCT
TGGGAACGCTACCTTCGGATTTGGAGAGCTTGAGTTCATCCatcTGTGAC
TGCGCCCTGACGGCCATCGCCAACGGGGAGATGGGCTTGACTGTCCATGC
CGGGGGGGAATTCGACCCTCGGAACCGATACCACGATCCCTACCAGCTCA
CCTCTCTGGTGGTGGGACTGGCCGGGAAGCTCTCTGTCCTGGGTGCCACG
CGCGTCTTGTTCAGCGGGCCCGAGGCGTTGGAAAGCAGCCTGGACCACAT
GCGGCAATTCATCCAATTGGAGGCGCAGAAGGAGCAAGAAGAGCTGGCCA
CCGTCAAGCAAGTAAGGCAGGAGGTTCAGGCCAAGTTCCCAGGCACGAAA
TTGCCGGAGATGCCCGCGGAAATGGCGAAAGAGAAgTTGGTCCGTTTGCG
GGAGCGACAACGTCTGGCAGATCGAGTTCTCTTTGGCTCCCTCCTGGGTG
ACTACCGCTTAACAGGAGACAACATGATGGATTTGGAGACGGCGCCCTCT
CGGGTTTTCGGAGAAATCGATCTCGACCAGGACCGGCTCTTTATCGTCGT
GGCCCCTGGGAACAGCCCAGTGGTGCGTTCCGCCTTATGACAAGCGCCTG
TCTTCCGGCGCCCCCCAAGTCGCTTCGCTTTATCGGCTTCTGCCTTGCCG
TGCACTGTCTCGCTCAAGCCTTTATTTTCCCCACACgatctttttcttcc
cttcctcgcgctGTGGCCCCTGTGACGCGGCGATCCGCTGCTTTCATTGA
GCTGGGAGAAAAAacgcgaggggggggagggagcgatgaggagggagggt
cccTCGATGGCCGAagccgagggggagggggagggggaggacgggcaacA
GTCATCACCGAACGGGCATGGAACACGAGTACCTTGGGAACGCTACCTTC
GGATTTGGAGAGCTTGAGTTCATCCatcTGTGACTGCGCCCTGACGGCCA
TCGCCAACGGGGAGATGGGCTTGACTGTCCATGCCGGGGGGGAATTCGAC
CCTCGGAACCGATACCACGATCCCTACCAGCTCACCTCTCTGGTGGTGGG
ACTGGCCGGGAAGCTCTCTGTCCTGGGTGCCACGCGCGTCTTGTTCAGCG
GGCCCGAGGCGTTGGAAAGCAGCCTGGACCACATGCGGCAATTCATCCAA
TTGGAGGCGCAGAAGGAGCAAGAAGAGCTGGCCACCGTCAAGCAAGTAAG
GCAGGAGGTTCAGGCCAAGTTCCCAGGCACGAAATTGCCGGAGATGCCCG
CGGAAATGGCGAAAGAGAAgTTGGTCCGTTTGCGGGAGCGACAACGTCTG
GCAGATCGAGTTCTCTTTGGCTCCCTCCTGGGTGACTACCGCTTAACAGG
AGACAACATGATGGATTTGGAGACGGCGCCCTCTCGGGTTTTCGGAGAAA
TCGATCTCGACCAGGACCGGCTCTTTATCGTCGTGGCCCCTGGGAACAGC
CCAGTGGTGCGTTCCGCCTT

Synonyms

Publications