|
|
Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF2237 |
| Orig transcript id | gnl|cribi|Naga_100797g1.5342.mrna |
| Orig protein id | gnl|cribi|Naga_100797g1.5342 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037251.1 | supercontig | KK037251.1:77943..79549 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9001 ID=rna9001|Name=rna9001|organism=Nannochloropsis gaditana|type=mRNA|length=2540bp
CCTCCCTCCCTCCCCTCCTCTACCATCCTCCGTGGCAGACCCCAGCGCGG
GTCCACAAGAGCCACAAAGCGAAACAGCTTCTCCCCTCCTCCCTCCTCGC
CTTCGACCGCACTTTCCAGAAGGGGAGGGGAACGCACCGCAGGCTGGTGC
TCCTTTTCCTCTGGTCCACAAACCAAACCCATTGGAGGACCAAGGGTGGG
AGGAGGGAGGAGGAAGCAAGGCCAAAGGGGGGCCCCGGGTGGCGGCATTT
GGGCCGTAGTAAAGGAGGGATAAAGAGAGGAAGGGAAGGAGGAGGGGCGG
GAGGAAAGCGGGGGGGGATGTGGAGGACCGGCTCTTTGCAGAGGGGAACA
AGAACGACTGCAGTTGCTGCGGGAGGGCATGTTGAGACCGTGCGCGGTGT
GGAATGGGGCCCATGCACATGTGGGGAATGTTGAGTAATCTTTGGAAGAG
CGAGACGGCTGTACAAGAATCATGAATCGGAAGACAGAATGGAAGAAAAA
AAAAAGGACCGAGAAGACGGCTTGGGCAATTCGATGGAGCGCGTGCACGG
ATTTTCCGATCGATTGGAGCAACCCTGAAAACCAGCAAGAAAAATGCTCA
GTCATTTTATGTTCTTCCTTTTTCTTTAAGAATGAATCTTTAGATATGCG
GAAATCGAGTGTAAAGATTTGGGCGCCCTGTTCCTTCCCGTTGCGGGACA
CGCACTGCCTGCCTCCGCACAAACTGTTTTTTAACAAAGATTCACCAAGG
ATTCCACATCGGATGCGATGTTTGAGTAGAGTACTTATTCTTGAATATAT
ACCCATAGAAGTCCGAAAGACAAAATGTCACTTTTTATTCCAACCCCTGA
GTGACTTTTTTGGTTGCTTCGAAGAGTAGGGGAGGGAGGAGGTTAGATGT
GAACCCTCCCCCGATTTATGATCACGACCAAAAGCCATTCACGACTGTCA
GAAATCATCGCGCTACGCTTGTTCCAGGGTAAACGCTTTCAAAATTACAC
AAATACGGAGCAGCGCTTCTAAACGTGCAATAGCAAGGATGTCGCTAGAC
GGTGACAGAAGCCGACGACCTGTCCTCGTGCGAACGCCGGAGGGGCTACC
GAGCCAAAGGAATAGACCCAACAGGAAACGCGGACGAAGAACATGCGTCG
AGCAGTTGCACATGCTGTGTTGCTGCCTGCATTCGCTTGTCCCTCGGGTA
TATCGTGATAGTATTCTGGGCACAAGAGCTGCTGGGCGACAGCCGCGGTG
GCTTGAGGAGGATGAGGAGGAGGAGGAAGAGGAGGAGAAGATAAGGCAGC
AGGGGCAGAGAGGGAGGGATGGAGATAGAAAAAACGGCTACGAGGGCAAT
GAGAAGGAAAGGGAACAGCTGTACGAGATGGTGCCTATCTCGCCGCGTGA
GGAAGAGGAAAGTGATGTCCGCATCCTCCTCGACACTACCCACGCCTTGA
AGAAGTCGTACGATCTAAGCACGTGCCTACCACCTCCCCACCAAAGCGGT
GGGAGCTCGCAGGGAGCGAAAGGGACGTCGTGTGCGTCGAGGGTGGATCC
CGAGGGCGCGGGGACGGTCGAGAAAAGCATTGATGGGGCGCCGTGGAGGT
GGGAGGAATCGGTCGGCTGGAGAAGGGAGGGAGGAAAAGGCAAAGGGGGG
GAAGGAGGGGAGGCATCCAAGGCAATGCTGCCGGAGTGCGTCATTTGTTT
GGAGGAGTTCACGGAGGAGAACCCGGAGATACCTACACGTGAGGAAGGGG
GGGGGGGCAGGGGGCAGTGGGAGTGACCTTCATGACGAAGCGGTGCATGT
GATGCCCTGCCATGCTGCGCTGGTGGGTTTCAATCCACCCTTAAAAGAGT
CCTCCGCTCTTGTCTGCTGCGAGTCCACGACTATCTGCCTTGCCCACTTG
TACGATGACTCATCCTGCTTTACCCCTCCTCCCACCCTTTTCGGACCCTC
TCTGCTTCCAGTATGCTCTTGTGGAGAGAACCGGGCGCGGTTCCATCTCC
CCTGTCTCCTCCTCTATGTGGAGCGTGGGCCTTCACGACCAGGACGTCGA
CCGGGGCGGGAAAACGCCGGGAGGGAGGGGAGGACAAAAGAGCGGCCCGT
CTGTCCGACCTGTCGCGGTCATTTGTATTGGGAGGAAATTGGCTGAGAGG
GGGGAGGCAGATGAAGGGGAACGACAGGGAAGGGAGAAATGGAGGGGCTG
GGGGAGTGTGGCTGGCTGGGAGGTACGGGCATCTACGTGGTGTTAACAGC
GTGCTATTATGGATGCTGGTCAAGTCGGGGGGGGCGGGAGCGTCAGGGAG
TCTGACGGCAGGGGAAACACAGTACCATGTCCGCGGCGAAGGTGATGGAT
GTAGAGACACGTATAGGCAGGTCGAAGAGAAGGGTCCAGGGAATGAATGT
CATAGAATGCATGCTGGGGCGGTCGTGGTCTTCATTTTTGGTTGTGTAGG
GAAGGATGTTCCACGAGGGGTGTAGAAAAAAATCTGAGGAGGAAGCAAAT
CCAAATTCACAAGAAACGAAGGTCGTGAAAAAATAATCCA back to topprotein sequence of rna9001 >rna9001-protein ID=rna9001-protein|Name=rna9001|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
MRPCARKADIKSFTTIASLFLLSSLSTRSAYGFLALRQASASFNVCVAGA
TPSGKADEKPTPPQGQSAFVRSLFTDVAERRDKEQASIKAEAKAAAAQRL
EAAKMRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVS
DDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACA
VDLKATHIKALDVCNLNALIEHALEPPPSQEGEGAGGGEGDEKEQSGAQK
ASAGKKEDL back to topmRNA from alignment at KK037251.1:77943..79549+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9001 ID=rna9001|Name=rna9001|organism=Nannochloropsis gaditana|type=mRNA|length=1607bp|location=Sequence derived from alignment at KK037251.1:77943..79549+ (Nannochloropsis gaditana)
ATGAGACCTTGCGCCCGCAAGGCCGATATCAAGTCCTTCACCACAATTGT
ACGTAGCAACTCTGTCTTACTTCTAGGCGTAAAGGACCTGTCTCACACTG
AACACTCCCAACACACACTCCACATTAGGCTTCACTGTTCTTGTTGTCGT
CTCTATCCACCCGCTCTGCCTACGGCTTTTTGGCTTTACGGcaggcctcg
gcgtcctTCAACGTGTGCGTTGCAGGAGCCACGCCCTCTGGGAAAGCGGA
CGAGAAACCGGTTCGTTGTTATTTTTTAGAAGAAACCTCGAGACTACCCA
CACAATGTCGAATAGGACGGCACTCTGtgtgcttcttcctgctctttTCC
CCGTGCTTGACCCCTTCTCCGTCTTTTTCCAGACGCCTCCCCAAGGTCAG
TCGGCCTTTGTCCGGTCTCTATTCACCGACGTGGCTGAACGCCGGGATAA
GGAACAGGGTGAGTGTCCAGGAGCTTGTGGATGGCTTTTCCCTTTCGTCA
GACGCGGAAGGTAGTGTCGGCAGACGCCCACGCGGCTTTCAAAACGCCCA
CATCGATGGTCCGTCccacctcctttccttccaaatTTCTGGTTTCCGCA
TGTCAATACAGCCTCCATCAAAGCAGAAGCCAAAGCAGCCGCTGCCCAAC
GCTTGGAGGCAGCCAAAATGCGGGGAGAGATCAACGTCCTGGGGGGGCCT
CTGGAGGTAAGGCGGTGACGTGGAATAGAACCGGCGGCATGCacatggaa
aaaggggggaaggcagtgAGGATGGAAAGCCGAGCGACGCGGACGAAAAG
GTCTGTGCTTGCCCAACCATGTGCCCGATTTGGAGGCTTGCTTTGCTCGC
TCATCCGGAGCTTCCCTTGCCGTGTTCTTGCCGTATTCTCATCATATTTT
CCTCATGCCGTTAGCTCTGCGGTACCGATCCGATGACGGGCTTCACCAGG
GAAGGGTGCTGCACCACGGGTCCCATGGATTTGGGTTCGCAtacggtgag
ggagggagggagagcgggggcgagagagggagggagcgaatGGCTTGCGT
GCTGTCTTTGGCAAAAGGCCACCATGCatatttctttcccttccctcctt
tccgccctccccttccaaggTGTGCGCCGTGGTCTCGGACGACTTCCTCC
GTTACTCCAAGGCCCGAGGGAACGACCTCATGACCCCCCGCCCGGAATAC
TCATTTCCGGGGCTGAAAGTGAgtgaggatggaaaggaggaatggaggga
aggatggaaaaaCCTCGGGTGCCGTGTGTTATGTGGGTGCTTATTTTTGA
TCTGATTTCTGCCTGGGGATTTCATGAAATGCTGACGtcgttttccttct
ctttacAGCCGGGAGACCGCTGGTGTCTGTGTGCCTCGCGGTGGGCGGAA
GCCTACGACGAAGGGGTGGCGTGTGCTGTGGATTTGAAGGCAACACATAT
CAAGGCATTGGACGTCTGCAATTTGAACGCCCTGATCGAGCATGCGTTGG
AGCCCCCACCTTcgcaggaaggcgagggggcgggcgggggagaaggggat
gagaaggagcagagCGGGGCTCAGAAAGCGTccgcggggaagaaggaaga
tttGTGA back to topCoding sequence (CDS) from alignment at KK037251.1:77943..79549+ >rna9001 ID=rna9001|Name=rna9001|organism=Nannochloropsis gaditana|type=CDS|length=5460bp|location=Sequence derived from alignment at KK037251.1:77943..79549+ (Nannochloropsis gaditana)
ATGAGACCTTGCGCCCGCAAGGCCGATATCAAGTCCTTCACCACAATTGC
TTCACTGTTCTTGTTGTCGTCTCTATCCACCCGCTCTGCCTACGGCTTTT
TGGCTTTACGGcaggcctcggcgtcctTCAACGTGTGCGTTGCAGGAGCC
ACGCCCTCTGGGAAAGCGGACGAGAAACCGACGCCTCCCCAAGGTCAGTC
GGCCTTTGTCCGGTCTCTATTCACCGACGTGGCTGAACGCCGGGATAAGG
AACAGGCCTCCATCAAAGCAGAAGCCAAAGCAGCCGCTGCCCAACGCTTG
GAGGCAGCCAAAATGCGGGGAGAGATCAACGTCCTGGGGGGGCCTCTGGA
GCTCTGCGGTACCGATCCGATGACGGGCTTCACCAGGGAAGGGTGCTGCA
CCACGGGTCCCATGGATTTGGGTTCGCAtacggTGTGCGCCGTGGTCTCG
GACGACTTCCTCCGTTACTCCAAGGCCCGAGGGAACGACCTCATGACCCC
CCGCCCGGAATACTCATTTCCGGGGCTGAAACCGGGAGACCGCTGGTGTC
TGTGTGCCTCGCGGTGGGCGGAAGCCTACGACGAAGGGGTGGCGTGTGCT
GTGGATTTGAAGGCAACACATATCAAGGCATTGGACGTCTGCAATTTGAA
CGCCCTGATCGAGCATGCGTTGGAGCCCCCACCTTcgcaggaaggcgagg
gggcgggcgggggagaaggggatgagaaggagcagagCGGGGCTCAGAAA
GCGTccgcggggaagaaggaagatttGTGAATGAGACCTTGCGCCCGCAA
GGCCGATATCAAGTCCTTCACCACAATTGCTTCACTGTTCTTGTTGTCGT
CTCTATCCACCCGCTCTGCCTACGGCTTTTTGGCTTTACGGcaggcctcg
gcgtcctTCAACGTGTGCGTTGCAGGAGCCACGCCCTCTGGGAAAGCGGA
CGAGAAACCGACGCCTCCCCAAGGTCAGTCGGCCTTTGTCCGGTCTCTAT
TCACCGACGTGGCTGAACGCCGGGATAAGGAACAGGCCTCCATCAAAGCA
GAAGCCAAAGCAGCCGCTGCCCAACGCTTGGAGGCAGCCAAAATGCGGGG
AGAGATCAACGTCCTGGGGGGGCCTCTGGAGCTCTGCGGTACCGATCCGA
TGACGGGCTTCACCAGGGAAGGGTGCTGCACCACGGGTCCCATGGATTTG
GGTTCGCAtacggTGTGCGCCGTGGTCTCGGACGACTTCCTCCGTTACTC
CAAGGCCCGAGGGAACGACCTCATGACCCCCCGCCCGGAATACTCATTTC
CGGGGCTGAAACCGGGAGACCGCTGGTGTCTGTGTGCCTCGCGGTGGGCG
GAAGCCTACGACGAAGGGGTGGCGTGTGCTGTGGATTTGAAGGCAACACA
TATCAAGGCATTGGACGTCTGCAATTTGAACGCCCTGATCGAGCATGCGT
TGGAGCCCCCACCTTcgcaggaaggcgagggggcgggcgggggagaaggg
gatgagaaggagcagagCGGGGCTCAGAAAGCGTccgcggggaagaagga
agatttGTGAATGAGACCTTGCGCCCGCAAGGCCGATATCAAGTCCTTCA
CCACAATTGCTTCACTGTTCTTGTTGTCGTCTCTATCCACCCGCTCTGCC
TACGGCTTTTTGGCTTTACGGcaggcctcggcgtcctTCAACGTGTGCGT
TGCAGGAGCCACGCCCTCTGGGAAAGCGGACGAGAAACCGACGCCTCCCC
AAGGTCAGTCGGCCTTTGTCCGGTCTCTATTCACCGACGTGGCTGAACGC
CGGGATAAGGAACAGGCCTCCATCAAAGCAGAAGCCAAAGCAGCCGCTGC
CCAACGCTTGGAGGCAGCCAAAATGCGGGGAGAGATCAACGTCCTGGGGG
GGCCTCTGGAGCTCTGCGGTACCGATCCGATGACGGGCTTCACCAGGGAA
GGGTGCTGCACCACGGGTCCCATGGATTTGGGTTCGCAtacggTGTGCGC
CGTGGTCTCGGACGACTTCCTCCGTTACTCCAAGGCCCGAGGGAACGACC
TCATGACCCCCCGCCCGGAATACTCATTTCCGGGGCTGAAACCGGGAGAC
CGCTGGTGTCTGTGTGCCTCGCGGTGGGCGGAAGCCTACGACGAAGGGGT
GGCGTGTGCTGTGGATTTGAAGGCAACACATATCAAGGCATTGGACGTCT
GCAATTTGAACGCCCTGATCGAGCATGCGTTGGAGCCCCCACCTTcgcag
gaaggcgagggggcgggcgggggagaaggggatgagaaggagcagagCGG
GGCTCAGAAAGCGTccgcggggaagaaggaagatttGTGAATGAGACCTT
GCGCCCGCAAGGCCGATATCAAGTCCTTCACCACAATTGCTTCACTGTTC
TTGTTGTCGTCTCTATCCACCCGCTCTGCCTACGGCTTTTTGGCTTTACG
GcaggcctcggcgtcctTCAACGTGTGCGTTGCAGGAGCCACGCCCTCTG
GGAAAGCGGACGAGAAACCGACGCCTCCCCAAGGTCAGTCGGCCTTTGTC
CGGTCTCTATTCACCGACGTGGCTGAACGCCGGGATAAGGAACAGGCCTC
CATCAAAGCAGAAGCCAAAGCAGCCGCTGCCCAACGCTTGGAGGCAGCCA
AAATGCGGGGAGAGATCAACGTCCTGGGGGGGCCTCTGGAGCTCTGCGGT
ACCGATCCGATGACGGGCTTCACCAGGGAAGGGTGCTGCACCACGGGTCC
CATGGATTTGGGTTCGCAtacggTGTGCGCCGTGGTCTCGGACGACTTCC
TCCGTTACTCCAAGGCCCGAGGGAACGACCTCATGACCCCCCGCCCGGAA
TACTCATTTCCGGGGCTGAAACCGGGAGACCGCTGGTGTCTGTGTGCCTC
GCGGTGGGCGGAAGCCTACGACGAAGGGGTGGCGTGTGCTGTGGATTTGA
AGGCAACACATATCAAGGCATTGGACGTCTGCAATTTGAACGCCCTGATC
GAGCATGCGTTGGAGCCCCCACCTTcgcaggaaggcgagggggcgggcgg
gggagaaggggatgagaaggagcagagCGGGGCTCAGAAAGCGTccgcgg
ggaagaaggaagatttGTGAATGAGACCTTGCGCCCGCAAGGCCGATATC
AAGTCCTTCACCACAATTGCTTCACTGTTCTTGTTGTCGTCTCTATCCAC
CCGCTCTGCCTACGGCTTTTTGGCTTTACGGcaggcctcggcgtcctTCA
ACGTGTGCGTTGCAGGAGCCACGCCCTCTGGGAAAGCGGACGAGAAACCG
ACGCCTCCCCAAGGTCAGTCGGCCTTTGTCCGGTCTCTATTCACCGACGT
GGCTGAACGCCGGGATAAGGAACAGGCCTCCATCAAAGCAGAAGCCAAAG
CAGCCGCTGCCCAACGCTTGGAGGCAGCCAAAATGCGGGGAGAGATCAAC
GTCCTGGGGGGGCCTCTGGAGCTCTGCGGTACCGATCCGATGACGGGCTT
CACCAGGGAAGGGTGCTGCACCACGGGTCCCATGGATTTGGGTTCGCAta
cggTGTGCGCCGTGGTCTCGGACGACTTCCTCCGTTACTCCAAGGCCCGA
GGGAACGACCTCATGACCCCCCGCCCGGAATACTCATTTCCGGGGCTGAA
ACCGGGAGACCGCTGGTGTCTGTGTGCCTCGCGGTGGGCGGAAGCCTACG
ACGAAGGGGTGGCGTGTGCTGTGGATTTGAAGGCAACACATATCAAGGCA
TTGGACGTCTGCAATTTGAACGCCCTGATCGAGCATGCGTTGGAGCCCCC
ACCTTcgcaggaaggcgagggggcgggcgggggagaaggggatgagaagg
agcagagCGGGGCTCAGAAAGCGTccgcggggaagaaggaagatttGTGA
ATGAGACCTTGCGCCCGCAAGGCCGATATCAAGTCCTTCACCACAATTGC
TTCACTGTTCTTGTTGTCGTCTCTATCCACCCGCTCTGCCTACGGCTTTT
TGGCTTTACGGcaggcctcggcgtcctTCAACGTGTGCGTTGCAGGAGCC
ACGCCCTCTGGGAAAGCGGACGAGAAACCGACGCCTCCCCAAGGTCAGTC
GGCCTTTGTCCGGTCTCTATTCACCGACGTGGCTGAACGCCGGGATAAGG
AACAGGCCTCCATCAAAGCAGAAGCCAAAGCAGCCGCTGCCCAACGCTTG
GAGGCAGCCAAAATGCGGGGAGAGATCAACGTCCTGGGGGGGCCTCTGGA
GCTCTGCGGTACCGATCCGATGACGGGCTTCACCAGGGAAGGGTGCTGCA
CCACGGGTCCCATGGATTTGGGTTCGCAtacggTGTGCGCCGTGGTCTCG
GACGACTTCCTCCGTTACTCCAAGGCCCGAGGGAACGACCTCATGACCCC
CCGCCCGGAATACTCATTTCCGGGGCTGAAACCGGGAGACCGCTGGTGTC
TGTGTGCCTCGCGGTGGGCGGAAGCCTACGACGAAGGGGTGGCGTGTGCT
GTGGATTTGAAGGCAACACATATCAAGGCATTGGACGTCTGCAATTTGAA
CGCCCTGATCGAGCATGCGTTGGAGCCCCCACCTTcgcaggaaggcgagg
gggcgggcgggggagaaggggatgagaaggagcagagCGGGGCTCAGAAA
GCGTccgcggggaagaaggaagatttGTGAATGAGACCTTGCGCCCGCAA
GGCCGATATCAAGTCCTTCACCACAATTGCTTCACTGTTCTTGTTGTCGT
CTCTATCCACCCGCTCTGCCTACGGCTTTTTGGCTTTACGGcaggcctcg
gcgtcctTCAACGTGTGCGTTGCAGGAGCCACGCCCTCTGGGAAAGCGGA
CGAGAAACCGACGCCTCCCCAAGGTCAGTCGGCCTTTGTCCGGTCTCTAT
TCACCGACGTGGCTGAACGCCGGGATAAGGAACAGGCCTCCATCAAAGCA
GAAGCCAAAGCAGCCGCTGCCCAACGCTTGGAGGCAGCCAAAATGCGGGG
AGAGATCAACGTCCTGGGGGGGCCTCTGGAGCTCTGCGGTACCGATCCGA
TGACGGGCTTCACCAGGGAAGGGTGCTGCACCACGGGTCCCATGGATTTG
GGTTCGCAtacggTGTGCGCCGTGGTCTCGGACGACTTCCTCCGTTACTC
CAAGGCCCGAGGGAACGACCTCATGACCCCCCGCCCGGAATACTCATTTC
CGGGGCTGAAACCGGGAGACCGCTGGTGTCTGTGTGCCTCGCGGTGGGCG
GAAGCCTACGACGAAGGGGTGGCGTGTGCTGTGGATTTGAAGGCAACACA
TATCAAGGCATTGGACGTCTGCAATTTGAACGCCCTGATCGAGCATGCGT
TGGAGCCCCCACCTTcgcaggaaggcgagggggcgggcgggggagaaggg
gatgagaaggagcagagCGGGGCTCAGAAAGCGTccgcggggaagaagga
agatttGTGA back to top
|