EWM21702.1, cds8971 (CDS) Nannochloropsis gaditana

Overview
NameEWM21702.1
Unique Namecds8971
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:77943..77990 +
Alignment locationKK037251.1:78071..78202 +
Alignment locationKK037251.1:78325..78400 +
Alignment locationKK037251.1:78554..78648 +
Alignment locationKK037251.1:78857..78937 +
Alignment locationKK037251.1:79062..79160 +
Alignment locationKK037251.1:79301..79549 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21702.1
ProductProtein of unknown function DUF2237
Orig transcript idgnl|cribi|Naga_100797g1.5342.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:77943..77990 +
KK037251.1supercontigKK037251.1:78071..78202 +
KK037251.1supercontigKK037251.1:78325..78400 +
KK037251.1supercontigKK037251.1:78554..78648 +
KK037251.1supercontigKK037251.1:78857..78937 +
KK037251.1supercontigKK037251.1:79062..79160 +
KK037251.1supercontigKK037251.1:79301..79549 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018714DUF2237
Homology
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|585102000|gb|EWM21702.1| (Protein of unknown function DUF2237 [Nannochloropsis gaditana])

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MRPCARKADIKSFTTIASLFLLSSLSTRSAYGFLALRQASASFNVCVAGATPSGKADEKPTPPQGQSAFVRSLFTDVAERRDKEQASIKAEAKAAAAQRLEAAKMRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPPPSQEGEGAGGGEGDEKEQSGAQKASAGKKEDL 259
            MRPCARKADIKSFTTIASLFLLSSLSTRSAYGFLALRQASASFNVCVAGATPSGKADEKPTPPQGQSAFVRSLFTDVAERRDKEQASIKAEAKAAAAQRLEAAKMRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPPPSQEGEGAGGGEGDEKEQSGAQKASAGKKEDL
Sbjct:    1 MRPCARKADIKSFTTIASLFLLSSLSTRSAYGFLALRQASASFNVCVAGATPSGKADEKPTPPQGQSAFVRSLFTDVAERRDKEQASIKAEAKAAAAQRLEAAKMRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPPPSQEGEGAGGGEGDEKEQSGAQKASAGKKEDL 259          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|504251271|ref|WP_014438373.1| (DUF2237 domain-containing protein [Phycisphaera mikurensis] >gi|381388349|dbj|BAM05165.1| hypothetical protein PSMK_30060 [Phycisphaera mikurensis NBRC 102666])

HSP 1 Score: 173.711 bits (439), Expect = 1.032e-51
Identity = 80/114 (70.18%), Postives = 89/114 (78.07%), Query Frame = 0
Query:  110 NVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHA 223
            NVLGGPL +C  DP+TGF+R GCC TGP DLGSHTVCAV+++DFL ++K  GNDL TPRPEY FPGLKPGDRWCLCA RWAEA   G A  VDL ATH KAL+V  L  L EHA
Sbjct:   11 NVLGGPLAICSKDPLTGFSRSGCCETGPQDLGSHTVCAVMTEDFLVFTKQAGNDLTTPRPEYRFPGLKPGDRWCLCAGRWAEAEAAGRAPRVDLAATHAKALEVVALETLREHA 124          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|1194617397|ref|WP_085949675.1| (DUF2237 domain-containing protein [Frankia alni])

HSP 1 Score: 173.711 bits (439), Expect = 1.098e-51
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPP 227
            M  E NVLGG LE CGTDP+TGF R+GCC+TGP DLG+HTVCAVV+ DFLR+ +  GNDL TPRPEYSFPGL+PGDRWC+ A RW +AYD GVA  V L +TH +AL+V  L AL  HA++ P
Sbjct:    1 MAVERNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGNHTVCAVVTADFLRHQRQVGNDLSTPRPEYSFPGLRPGDRWCVVAVRWLQAYDAGVAAPVVLASTHERALEVIPLEALRAHAVDVP 123          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|1125231931|gb|OLB79803.1| (hypothetical protein AUI14_09155 [Actinobacteria bacterium 13_2_20CM_2_71_6])

HSP 1 Score: 173.711 bits (439), Expect = 1.551e-51
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPP 227
            M G+ NVLGG LE CGTDP+TGF R+GCC+TGP DLGSHTVCAVV+ +FL + +  GNDL+TPRPE+ FPGL+PGDRWC+ A RW EAY+ GVA  V L ATH +A+D+  L AL EHA++ P
Sbjct:    1 MTGDRNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGSHTVCAVVTAEFLAHQRRTGNDLITPRPEFRFPGLQPGDRWCVVAIRWLEAYEAGVAAPVVLAATHARAVDIVPLEALREHAVDVP 123          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|768713788|ref|WP_044883107.1| (MULTISPECIES: DUF2237 domain-containing protein [Frankia] >gi|765354434|gb|KJE25164.1| hypothetical protein FF36_00297 [Frankia sp. CpI1-S] >gi|941946734|gb|KQC37712.1| hypothetical protein UK82_13865 [Frankia sp. ACN1ag] >gi|944478291|gb|KQM08020.1| hypothetical protein FF86_1001276 [Frankia sp. CpI1-P])

HSP 1 Score: 173.326 bits (438), Expect = 2.018e-51
Identity = 81/123 (65.85%), Postives = 95/123 (77.24%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPP 227
            M  E NVLGG LE CGTDP+TGF R+GCC+TGP DLGSHTVCAVV+ DFLR+ +  GNDL TPRPEYSFPGL+PGDRWC+ A RW +AYD G A  V L +TH +AL+V  L AL  HA++ P
Sbjct:    1 MAEERNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGSHTVCAVVTADFLRHQRQVGNDLSTPRPEYSFPGLRPGDRWCVVAVRWLQAYDAGAAAPVVLASTHERALEVIPLEALRAHAVDVP 123          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|499924207|ref|WP_011604941.1| (DUF2237 domain-containing protein [Frankia sp. AvcI1] >gi|111150745|emb|CAJ62447.1| conserved hypothetical protein [Frankia alni ACN14a])

HSP 1 Score: 172.94 bits (437), Expect = 2.329e-51
Identity = 80/120 (66.67%), Postives = 95/120 (79.17%), Query Frame = 0
Query:  108 EINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPP 227
            E NVLGG LE CGTDP+TGF R+GCC+TGP DLG+HTVCAVV+ DFLR+ +  GNDL TPRPEYSFPGL+PGDRWC+ A RW +AYD GVA  V L +TH +AL+V  L AL  HA++ P
Sbjct:    2 ERNVLGGELEPCGTDPVTGFYRDGCCSTGPEDLGNHTVCAVVTADFLRHQRQVGNDLSTPRPEYSFPGLRPGDRWCVVAVRWLQAYDAGVAAPVVLASTHERALEVIPLEALRAHAVDVP 121          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|764487865|ref|WP_044389048.1| (DUF2237 domain-containing protein [Marinobacter excellens] >gi|938295099|gb|KPQ29032.1| hypothetical protein HLUCCX14_08155 [Marinobacter excellens HL-55])

HSP 1 Score: 172.555 bits (436), Expect = 3.727e-51
Identity = 78/115 (67.83%), Postives = 88/115 (76.52%), Query Frame = 0
Query:  109 INVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHA 223
            +NVLG  LE CGTDP TGF R+GCC TGP DLG+HTVC++V+ DFL YSKARGNDL TPRPE+ FPGLKPGD WCLCA RW EA++   A  V L+ATH  ALDVC LN L  H 
Sbjct:    7 LNVLGEKLETCGTDPKTGFYRDGCCNTGPDDLGNHTVCSIVTADFLEYSKARGNDLSTPRPEFGFPGLKPGDSWCLCAGRWQEAFEANSAPRVKLRATHQNALDVCQLNDLKAHT 121          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|1094648574|emb|SET45163.1| (hypothetical protein SAMN04487962_1104 [Marinobacter segnicrescens])

HSP 1 Score: 172.17 bits (435), Expect = 4.476e-51
Identity = 78/117 (66.67%), Postives = 94/117 (80.34%), Query Frame = 0
Query:  109 INVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALE 225
            INVLG PLE CGTDP+TGF R+GCC TGP D GSHTVCAVV+D+FL +S++RGNDL TPRPE+ FPGL+PGD WCLCA+RW EA + G A  V LKATH  ALD+C+L  L  H+++
Sbjct:    9 INVLGEPLEDCGTDPVTGFFRDGCCNTGPEDFGSHTVCAVVTDEFLAFSRSRGNDLSTPRPEFGFPGLRPGDGWCLCAARWREALEAGCAPRVRLKATHRAALDICDLADLKRHSVD 125          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|1099916055|emb|SFI99953.1| (hypothetical protein SAMN05421835_102457 [Amycolatopsis sacchari])

HSP 1 Score: 172.17 bits (435), Expect = 4.663e-51
Identity = 80/123 (65.04%), Postives = 97/123 (78.86%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPP 227
            M  + NVLGG LE CG+DP+TGF REGCCTTGP DLG+HTVCAVV+ +FL YS   GNDL+TPRPEY FPGL+ GDRWC+ A+RW EAY+ GVA  V L +TH +AL+V +L+AL EHA + P
Sbjct:    1 MANDRNVLGGELEPCGSDPVTGFYREGCCTTGPDDLGNHTVCAVVTKEFLEYSLKVGNDLLTPRPEYDFPGLQAGDRWCIVAARWQEAYEAGVAPPVALASTHERALEVVDLDALREHAADVP 123          
BLAST of EWM21702.1 vs. NCBI_GenBank
Match: gi|1125510355|gb|OLE29561.1| (hypothetical protein AUG44_03665 [Actinobacteria bacterium 13_1_20CM_3_71_11])

HSP 1 Score: 171.785 bits (434), Expect = 6.603e-51
Identity = 81/130 (62.31%), Postives = 97/130 (74.62%), Query Frame = 0
Query:  105 MRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVSDDFLRYSKARGNDLMTPRPEYSFPGLKPGDRWCLCASRWAEAYDEGVACAVDLKATHIKALDVCNLNALIEHALEPPPSQEGEG 234
            M  + NVLGG LE CGTDP+TGF R+GCCTTGP D+GSHTVCAVV+ +FL + +  GNDL+TPRPEY FPGL+PGDRWC+ A RW EAY+ G A  V L ATH +ALDV  L AL +HA++ PP     G
Sbjct:    1 MTEDRNVLGGELEPCGTDPVTGFYRDGCCTTGPEDIGSHTVCAVVTAEFLAHQQQVGNDLVTPRPEYRFPGLRPGDRWCVVAVRWLEAYEAGRAAPVVLAATHARALDVIPLEALRKHAVDVPPDLSSLG 130          
The following BLAST results are available for this feature:
BLAST of EWM21702.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102000|gb|EWM21702.1|0.000e+0100.00Protein of unknown function DUF2237 [Nannochlorops... [more]
gi|504251271|ref|WP_014438373.1|1.032e-5170.18DUF2237 domain-containing protein [Phycisphaera mi... [more]
gi|1194617397|ref|WP_085949675.1|1.098e-5165.85DUF2237 domain-containing protein [Frankia alni][more]
gi|1125231931|gb|OLB79803.1|1.551e-5164.23hypothetical protein AUI14_09155 [Actinobacteria b... [more]
gi|768713788|ref|WP_044883107.1|2.018e-5165.85MULTISPECIES: DUF2237 domain-containing protein [F... [more]
gi|499924207|ref|WP_011604941.1|2.329e-5166.67DUF2237 domain-containing protein [Frankia sp. Avc... [more]
gi|764487865|ref|WP_044389048.1|3.727e-5167.83DUF2237 domain-containing protein [Marinobacter ex... [more]
gi|1094648574|emb|SET45163.1|4.476e-5166.67hypothetical protein SAMN04487962_1104 [Marinobact... [more]
gi|1099916055|emb|SFI99953.1|4.663e-5165.04hypothetical protein SAMN05421835_102457 [Amycolat... [more]
gi|1125510355|gb|OLE29561.1|6.603e-5162.31hypothetical protein AUG44_03665 [Actinobacteria b... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9001rna9001Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications