rna90, rna90 (mRNA) Nannochloropsis gaditana

Overview
Namerna90
Unique Namerna90
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length267
Alignment locationCM002455.1:243907..244436 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100033g15.8412.mrna
Orig protein idgnl|cribi|Naga_100033g15.8412
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:243907..244436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g15gene88Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna90rna90-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30573.1cds90Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna90 ID=rna90|Name=rna90|organism=Nannochloropsis gaditana|type=mRNA|length=267bp
ATGATGCGCCACCCTCTTCAAACGATTTCTTTAATACGCGGACATCGGTC
TGAGCCATGCATTTCTTTATTTTTGAAGTCAAACAACATCGCAAGCCGTC
CATCGAACAGATTCGTGAGTTTGACGAAACTATGCGTGTGTGAGTTGCAA
GACAATGATTTCGAGAGAAAAACTTGGGGAAATACCGGGACAACTTTTGT
ATGCCTTCTATTCCCAGTATCTTTCCATGGCGAGTTAAACCCGCAGGACC
TTCCATGGCATGTTTAA
back to top

protein sequence of rna90

>rna90-protein ID=rna90-protein|Name=rna90|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MDVSTKTNEDHFLRRDKGASPEIQRLCQSKCKRYACDIQKCLERNSYQEK
SCWKEIAYWDICCDKIKAKDGKSVALLRQRADRVSGNRNNKSMQ
back to top

mRNA from alignment at CM002455.1:243907..244436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna90 ID=rna90|Name=rna90|organism=Nannochloropsis gaditana|type=mRNA|length=530bp|location=Sequence derived from alignment at CM002455.1:243907..244436- (Nannochloropsis gaditana)
ATGGACGTCTCTACAAAAACTAATGAAGATCACTTTCTGCGGCGCGACAA
GGGAGCTAGTCCCGAGATACAGAGGTTGTGTCAGTCTAAATGCAAGTACG
TTATTCGTCTTTTGGCAGAACATAGGGAAATGAACAATTTTCCGAGGGTT
ACCGACGCGTACATATATAACACAGACGCTACGCATGCGACATCCAGAAG
TGTCTAGAGCGTAACAGCTACCAGGAAAAATCGGTAAGCATAGAGGAGGT
ACAATTTAGTCTCTGTGCGTGCTTAAGCTGTAAGGTTTTGGCTGAAGGGC
CTATCTCATGCCCCTTTTCCCTTTTACACACATGTTATTTATTGGAGCAA
AGTGTTGGAAAGAAATAGCTTACTGGGATATTTGTTGCGACAAGATCAAG
GCAAAGGACGGGAAAAGTGTGGCAGTGCCACATTCTTGACTTCATTTTGT
TGGTGCACTTTCCACTTTAGCTCTTACGCCAGCGAGCCGATCGGGTAAGT
GGTAACAGAAATAACAAGAGCATGCAATAA
back to top

Coding sequence (CDS) from alignment at CM002455.1:243907..244436-

>rna90 ID=rna90|Name=rna90|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002455.1:243907..244436- (Nannochloropsis gaditana)
CTCTTACGCCAGCGAGCCGATCGGGTAAGTGGTAACAGAAATAACAAGAG
CATGCAATAATGTTGGAAAGAAATAGCTTACTGGGATATTTGTTGCGACA
AGATCAAGGCAAAGGACGGGAAAAGTGTGGCAACGCTACGCATGCGACAT
CCAGAAGTGTCTAGAGCGTAACAGCTACCAGGAAAAATCGATGGACGTCT
CTACAAAAACTAATGAAGATCACTTTCTGCGGCGCGACAAGGGAGCTAGT
CCCGAGATACAGAGGTTGTGTCAGTCTAAATGCAACTCTTACGCCAGCGA
GCCGATCGGGTAAGTGGTAACAGAAATAACAAGAGCATGCAATAATGTTG
GAAAGAAATAGCTTACTGGGATATTTGTTGCGACAAGATCAAGGCAAAGG
ACGGGAAAAGTGTGGCAACGCTACGCATGCGACATCCAGAAGTGTCTAGA
GCGTAACAGCTACCAGGAAAAATCGATGGACGTCTCTACAAAAACTAATG
AAGATCACTTTCTGCGGCGCGACAAGGGAGCTAGTCCCGAGATACAGAGG
TTGTGTCAGTCTAAATGCAACTCTTACGCCAGCGAGCCGATCGGGTAAGT
GGTAACAGAAATAACAAGAGCATGCAATAATGTTGGAAAGAAATAGCTTA
CTGGGATATTTGTTGCGACAAGATCAAGGCAAAGGACGGGAAAAGTGTGG
CAACGCTACGCATGCGACATCCAGAAGTGTCTAGAGCGTAACAGCTACCA
GGAAAAATCGATGGACGTCTCTACAAAAACTAATGAAGATCACTTTCTGC
GGCGCGACAAGGGAGCTAGTCCCGAGATACAGAGGTTGTGTCAGTCTAAA
TGCAACTCTTACGCCAGCGAGCCGATCGGGTAAGTGGTAACAGAAATAAC
AAGAGCATGCAATAATGTTGGAAAGAAATAGCTTACTGGGATATTTGTTG
CGACAAGATCAAGGCAAAGGACGGGAAAAGTGTGGCAACGCTACGCATGC
GACATCCAGAAGTGTCTAGAGCGTAACAGCTACCAGGAAAAATCGATGGA
CGTCTCTACAAAAACTAATGAAGATCACTTTCTGCGGCGCGACAAGGGAG
CTAGTCCCGAGATACAGAGGTTGTGTCAGTCTAAATGCAA
back to top
Synonyms
Publications