EWM30573.1, cds90 (CDS) Nannochloropsis gaditana

Overview
NameEWM30573.1
Unique Namecds90
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:244342..244436 -
Alignment locationCM002455.1:244204..244261 -
Alignment locationCM002455.1:244013..244084 -
Alignment locationCM002455.1:243907..243966 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30573.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100033g15.8412.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:244342..244436 -
CM002455.1supercontigCM002455.1:244204..244261 -
CM002455.1supercontigCM002455.1:244013..244084 -
CM002455.1supercontigCM002455.1:243907..243966 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
IPR027179DUF1903
Homology
[Close]
BLAST of EWM30573.1 vs. NCBI_GenBank
Match: gi|585113240|gb|EWM30573.1| (hypothetical protein Naga_100033g15 [Nannochloropsis gaditana])

HSP 1 Score: 193.741 bits (491), Expect = 1.265e-62
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 
Query:    1 MDVSTKTNEDHFLRRDKGASPEIQRLCQSKCKRYACDIQKCLERNSYQEKSCWKEIAYWDICCDKIKAKDGKSVALLRQRADRVSGNRNNKSMQ 94
            MDVSTKTNEDHFLRRDKGASPEIQRLCQSKCKRYACDIQKCLERNSYQEKSCWKEIAYWDICCDKIKAKDGKSVALLRQRADRVSGNRNNKSMQ
Sbjct:    1 MDVSTKTNEDHFLRRDKGASPEIQRLCQSKCKRYACDIQKCLERNSYQEKSCWKEIAYWDICCDKIKAKDGKSVALLRQRADRVSGNRNNKSMQ 94
[Close]
BLAST of EWM30573.1 vs. NCBI_GenBank
Match: gi|553184049|ref|XP_005854018.1| (hypothetical protein NGA_0450600 [Nannochloropsis gaditana CCMP526] >gi|422295042|gb|EKU22341.1| hypothetical protein NGA_0450600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 112.849 bits (281), Expect = 7.076e-31
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 0 
Query:    1 MDVSTKTNEDHFLRRDKGASPEIQRLCQSKCKRYACDIQKCLERNSYQEKSCWKEIAYWDICCDKIKAKDGKSVALLRQR 80
            MDVSTKTNEDHFLRRDKGASPEIQRLCQSKCKRYACDIQKCLERNSYQEKS  ++ A      D++     ++++L+R R
Sbjct:    1 MDVSTKTNEDHFLRRDKGASPEIQRLCQSKCKRYACDIQKCLERNSYQEKSLLRQRA------DRMMRHPLQTISLIRGR 74
The following BLAST results are available for this feature:
BLAST of EWM30573.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585113240|gb|EWM30573.1|1.265e-62100.00hypothetical protein Naga_100033g15 [Nannochlorops... [more]
gi|553184049|ref|XP_005854018.1|7.076e-3170.00hypothetical protein NGA_0450600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna90rna90Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications