rna8995, rna8995 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8995
Unique Name	rna8995
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	918
Alignment location	KK037251.1:42211..44027 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100775g3.7634.mrna
Orig protein id	gnl\|cribi\|Naga_100775g3.7634
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:42211..44027 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100775g3	gene8721	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8995	rna8995-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21709.1	cds8965	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:42211..44027-
coding sequence from alignment at KK037251.1:42211..44027-

mRNA sequence

>rna8995 ID=rna8995|Name=rna8995|organism=Nannochloropsis gaditana|type=mRNA|length=918bp
ATGGGACACCACCGGCCTTGTCCCCGTTACCCCCAAAGTCAAGGGAATCA
CTCGCCCTCTCCTGCCGTGGCCGAGGAGAGCGCGGGGAGCGGAGGGCGGG
ACCGTCATCACAGCTATGCTTCCTACTCCCCGACGGCGGCGGTTTTGCGC
GGGGTAGCCGATAAAGTGCAGCGTTTCGGAGAGGGCGTCAGGAACTCGAC
GCTTTCGCGCAATTTTTCCTCAAACAAGCTCCACAAAGATGGGGCCGACG
CCCGGGAGAGGGAAGGAGGGAGGGAGAGCAGCACGAGTCGGGCCGACCGA
CGCGACAGCAGCAACGTCCATCCGGGGAGCACGTCCTCCCTGAACGCCTT
GCCATCTCTAGACTCCCACCACCACAAGCATCACAAGGGCGTCCAGGAAT
TCGGCGTGATCGGGGAAGAGCTGTACTCCCGGATGGACATTGAGGCCTTC
CTGATGATCGTGCGCGGATTCCAGCCCGCAGAACCCGCCACCACGAGCAC
TAGCAGTGTCAAACTTGAGAGGCCCACAGCATTGCGCGCCGCTGCTGCCG
CTGCGGTCGCTTCCTCCAAAACAGTCCCTCCAGCTCTGGGACTAGGGGGA
GGCGGAGGAGGATTGGAGGGAGGGAGGGAGGGGGGAAGGGAAGCAGGGAG
CAGCCTTCCACCCTTGTCCAAGGCTACCTTTCAGCCACCGTCCCCAATGC
CCACGGCCTTATCCGTGAAAATCCGGAGTGTGGTGGCGTCCGAGGAGGGA
AAGGCGGGGGGAGGGAAAGAGGAGTCGAAAGGGACGGGAGCTGCCGGGGA
CCCCGAGACCGTGCTGGCGAGAAGAAGAAGAGAGGAAGACGGAGAGACGG
AGGACAGGCGGAGACCAGGCGGCATGCGTGATGGGATCAATGGGGCGGGC
CACGAAGGGAGGTTGTGA

protein sequence of rna8995

>rna8995-protein ID=rna8995-protein|Name=rna8995|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MHAASLPRPSLTWERERKLDLQLQLCGVAGHAGAQTLNLHGNRLSPFGAS
QLFTSLVKHRVMPALRRLDVRNTHVGADGLGSVLKILSLRAPSPSSSSSF
PATTPNSPPLGTLRHLYVSLMHGKDEERQLETVQALLLQASQSLPRLRML
AILDEGEILDADTENRLKVTNSAILVRHHTRALPTPAV

mRNA from alignment at KK037251.1:42211..44027-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8995 ID=rna8995|Name=rna8995|organism=Nannochloropsis gaditana|type=mRNA|length=1817bp|location=Sequence derived from alignment at KK037251.1:42211..44027- (Nannochloropsis gaditana)
TCTTCCATCCGCCTCTCCCTCCCTCCCTTCTTCCCCTCCTCCTCCCCTCT
TGCTTACCCCCCAGGCGCCTTCCCTTCCTTACGAACTTTCCACCTGAACG
ACCTCTCCTCTTCGCCCTCCCTCTTCCCTCACTCCCGCTCCGGGCGCCTC
GAGCTTCTGCGGGTGCTGCTGGAGGAAGGGATCAGGAAGGGCGGAGTCCT
ACCTTGTTTGGAAGACCTCTCTTTGAGGAATACGGGTAAGGGGGACAGGC
TGGGAGAGAGGGAATGAGGGAGGGAACGGAGGAGGTGACTGGTGGGCGAA
AGAGAACGAGGTCGCTTTGTGCGCGAGGCTGGAAATTTGTGTCCTGTCTT
TCTCTTGCAGTCATCGCGTGACATATACGTCGTCCAACCTCATCTCTTTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAG
GCGTCACCTCCGCAGACTTCGAGGACCTGCTGTATGCACGCTGCCTCCCT
CCCTCGTCCATCTCTCACTTGGGAACGAGAGCGAAAGCTTGATTTACAAC
TTCAATTGTGTGGGGTGGCCGGCCATGCAGGCGCTCAGGTAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTC
TATGACATCCACGAAAGGTTTCGTCCGCGGACTAGCTTCTATTTAAATCT
GCGTCTAACGAATAATTCGCGCGCTTCCTCCCTTGCTGCAAATCACCCAC
GGCATTGTAGGCGTATCGGCGCTGCTCGCGCCTCGTCCTCCCCCCCTTTC
TCGTCCGTGGGCCCCCTCTTTCCCCGCCTGCAGACCCTGAATCTGCACGG
AAACCGGCTCTCCCCCTTTGGGGCCAGTCAACTCTTCACCTCACTCGTCA
AGCATAGGGTCATGCCCGCACTTCGGTAGGGGATGGAGGGAGAGGAGGAG
GGGCGGGGAGGGAAACGATGTGGTCCCATTGTTCTCTGTGCTGCTTTCCC
TCCCACAGGATGCGTCCTTCCCTTCCCCAATATCTCCCCCCCGCCTCACC
ATCCAATCACGCAATCACAGGCGTCTGGATGTCCGCAACACGCACGTCGG
GGCCGATGGCCTGGGCTCTGTCCTCAAAATTCTCAGCCTCCGAGCTCCTT
CCCCCTCCTCTTCTTCCTCCTTCCCGGCCACCACCCCTAACTCTCCTCCC
TTGGGCACCCTTCGGCACCTCTACGTCTCTCTGATGCATGGAAAGGACGA
AGAAAGACAGCTGGAGACCGTACAGGCGCTCCTCTTGCAGGTAAATCGGA
GAGAATGAGAGACGCAGTAGTAGTGCAAGCCGCCAAGGAGAGGCCAACGA
TAGGGCTTAGGGAGAGGCGTGTGATGAGAGTGGACGAGTTCACATGTATG
AGGATTGGGGCCAGCCCCCTTTGGGAGGAGGCGTCGCTTTTTTCATGTCG
AAGCTCGGAGGAGCGAGGGACGGATGGCTTCCCTGAGGACCGCGCTCATG
GATCGGGCACGTCACATGGCCTGAGCCCTCTTACCTGTCTCTCCCACACC
GGATCACTCAGGCTTCGCAAAGCTTGCCGCGCCTGCGCATGCTGGCTATA
TTGGACGAAGGCGAGATTTTGGACGCCGACACCGAGAACCGCCTTAAGGT
CAGAGGGGAAGGGGCGAGGAAGGGGGAGGAGGAAATGAAAGAGAGAAGGT
GAAGGGGTAGAGGGTATCGTTGTTTGACGCTTCGTCTCGTATGATTCTTC
ACAGGTGACCAATTCCGCCATTTTGGTGCGCCATCACACCCGAGCTTTGC
CCACACCTGCAGTTTGA

Coding sequence (CDS) from alignment at KK037251.1:42211..44027-

>rna8995 ID=rna8995|Name=rna8995|organism=Nannochloropsis gaditana|type=CDS|length=2835bp|location=Sequence derived from alignment at KK037251.1:42211..44027- (Nannochloropsis gaditana)
GTGACCAATTCCGCCATTTTGGTGCGCCATCACACCCGAGCTTTGCCCAC
ACCTGCAGTTTGAGCTTCGCAAAGCTTGCCGCGCCTGCGCATGCTGGCTA
TATTGGACGAAGGCGAGATTTTGGACGCCGACACCGAGAACCGCCTTAAG
GCGTCTGGATGTCCGCAACACGCACGTCGGGGCCGATGGCCTGGGCTCTG
TCCTCAAAATTCTCAGCCTCCGAGCTCCTTCCCCCTCCTCTTCTTCCTCC
TTCCCGGCCACCACCCCTAACTCTCCTCCCTTGGGCACCCTTCGGCACCT
CTACGTCTCTCTGATGCATGGAAAGGACGAAGAAAGACAGCTGGAGACCG
TACAGGCGCTCCTCTTGCAGACCCTGAATCTGCACGGAAACCGGCTCTCC
CCCTTTGGGGCCAGTCAACTCTTCACCTCACTCGTCAAGCATAGGGTCAT
GCCCGCACTTCGATGCACGCTGCCTCCCTCCCTCGTCCATCTCTCACTTG
GGAACGAGAGCGAAAGCTTGATTTACAACTTCAATTGTGTGGGGTGGCCG
GCCATGCAGGCGCTCAGGTGACCAATTCCGCCATTTTGGTGCGCCATCAC
ACCCGAGCTTTGCCCACACCTGCAGTTTGAGCTTCGCAAAGCTTGCCGCG
CCTGCGCATGCTGGCTATATTGGACGAAGGCGAGATTTTGGACGCCGACA
CCGAGAACCGCCTTAAGGCGTCTGGATGTCCGCAACACGCACGTCGGGGC
CGATGGCCTGGGCTCTGTCCTCAAAATTCTCAGCCTCCGAGCTCCTTCCC
CCTCCTCTTCTTCCTCCTTCCCGGCCACCACCCCTAACTCTCCTCCCTTG
GGCACCCTTCGGCACCTCTACGTCTCTCTGATGCATGGAAAGGACGAAGA
AAGACAGCTGGAGACCGTACAGGCGCTCCTCTTGCAGACCCTGAATCTGC
ACGGAAACCGGCTCTCCCCCTTTGGGGCCAGTCAACTCTTCACCTCACTC
GTCAAGCATAGGGTCATGCCCGCACTTCGATGCACGCTGCCTCCCTCCCT
CGTCCATCTCTCACTTGGGAACGAGAGCGAAAGCTTGATTTACAACTTCA
ATTGTGTGGGGTGGCCGGCCATGCAGGCGCTCAGGTGACCAATTCCGCCA
TTTTGGTGCGCCATCACACCCGAGCTTTGCCCACACCTGCAGTTTGAGCT
TCGCAAAGCTTGCCGCGCCTGCGCATGCTGGCTATATTGGACGAAGGCGA
GATTTTGGACGCCGACACCGAGAACCGCCTTAAGGCGTCTGGATGTCCGC
AACACGCACGTCGGGGCCGATGGCCTGGGCTCTGTCCTCAAAATTCTCAG
CCTCCGAGCTCCTTCCCCCTCCTCTTCTTCCTCCTTCCCGGCCACCACCC
CTAACTCTCCTCCCTTGGGCACCCTTCGGCACCTCTACGTCTCTCTGATG
CATGGAAAGGACGAAGAAAGACAGCTGGAGACCGTACAGGCGCTCCTCTT
GCAGACCCTGAATCTGCACGGAAACCGGCTCTCCCCCTTTGGGGCCAGTC
AACTCTTCACCTCACTCGTCAAGCATAGGGTCATGCCCGCACTTCGATGC
ACGCTGCCTCCCTCCCTCGTCCATCTCTCACTTGGGAACGAGAGCGAAAG
CTTGATTTACAACTTCAATTGTGTGGGGTGGCCGGCCATGCAGGCGCTCA
GGTGACCAATTCCGCCATTTTGGTGCGCCATCACACCCGAGCTTTGCCCA
CACCTGCAGTTTGAGCTTCGCAAAGCTTGCCGCGCCTGCGCATGCTGGCT
ATATTGGACGAAGGCGAGATTTTGGACGCCGACACCGAGAACCGCCTTAA
GGCGTCTGGATGTCCGCAACACGCACGTCGGGGCCGATGGCCTGGGCTCT
GTCCTCAAAATTCTCAGCCTCCGAGCTCCTTCCCCCTCCTCTTCTTCCTC
CTTCCCGGCCACCACCCCTAACTCTCCTCCCTTGGGCACCCTTCGGCACC
TCTACGTCTCTCTGATGCATGGAAAGGACGAAGAAAGACAGCTGGAGACC
GTACAGGCGCTCCTCTTGCAGACCCTGAATCTGCACGGAAACCGGCTCTC
CCCCTTTGGGGCCAGTCAACTCTTCACCTCACTCGTCAAGCATAGGGTCA
TGCCCGCACTTCGATGCACGCTGCCTCCCTCCCTCGTCCATCTCTCACTT
GGGAACGAGAGCGAAAGCTTGATTTACAACTTCAATTGTGTGGGGTGGCC
GGCCATGCAGGCGCTCAGGTGACCAATTCCGCCATTTTGGTGCGCCATCA
CACCCGAGCTTTGCCCACACCTGCAGTTTGAGCTTCGCAAAGCTTGCCGC
GCCTGCGCATGCTGGCTATATTGGACGAAGGCGAGATTTTGGACGCCGAC
ACCGAGAACCGCCTTAAGGCGTCTGGATGTCCGCAACACGCACGTCGGGG
CCGATGGCCTGGGCTCTGTCCTCAAAATTCTCAGCCTCCGAGCTCCTTCC
CCCTCCTCTTCTTCCTCCTTCCCGGCCACCACCCCTAACTCTCCTCCCTT
GGGCACCCTTCGGCACCTCTACGTCTCTCTGATGCATGGAAAGGACGAAG
AAAGACAGCTGGAGACCGTACAGGCGCTCCTCTTGCAGACCCTGAATCTG
CACGGAAACCGGCTCTCCCCCTTTGGGGCCAGTCAACTCTTCACCTCACT
CGTCAAGCATAGGGTCATGCCCGCACTTCGATGCACGCTGCCTCCCTCCC
TCGTCCATCTCTCACTTGGGAACGAGAGCGAAAGCTTGATTTACAACTTC
AATTGTGTGGGGTGGCCGGCCATGCAGGCGCTCAG

Synonyms

Publications