rna8992, rna8992 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8992
Unique Name	rna8992
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1800
Alignment location	KK037251.1:34436..36102 +

Link to JBrowse

Properties


Property Name	Value
Product	k homeostasis protein kha1
Orig transcript id	gnl\|cribi\|Naga_100183g11.8959.mrna
Orig protein id	gnl\|cribi\|Naga_100183g11.8959
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:34436..36102 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100183g11	gene8717	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8992	rna8992-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21712.1	cds8962	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:34436..36102+
coding sequence from alignment at KK037251.1:34436..36102+

mRNA sequence

>rna8992 ID=rna8992|Name=rna8992|organism=Nannochloropsis gaditana|type=mRNA|length=1800bp
ATGGCCAATCCTGAGGTCTGGACACGGAGTGGGAGTGGCGGCGGCCTCCG
AGGTCATTCCGATGCAAGCCCAGACTGGGCACCCGGGGCGCGGGTACCTT
TCCAAGAGCGCATCCGCATTCCTCGCGCTTGGCAGCCTGGGGAGGCGAAG
CCGGAGAACGACAGCGACAACGAAGAGGACCGGCCAGCGGCTGGTACGAG
CAAAGGCAAAAGCGGCGACCGGCGAGGTGGCTATAAATGCGGTCGCTGTG
GACAACCCAAGAAGGGACACGTTTGCACGAACAAGCCTCGGCTGCGGGCG
GCATTCGTCGAGACAACGGAGGTGGAGATTCAGGCAGAGAGGGACGCGGA
GATGGTTCTCCGGCGCCTGGATACCAAGCTTCAAGGATACCCGGAGAGCT
ACGGACTGACATTTCGATGGGCCCCCTCGGCGGCCTCTCTGTACGCGGCG
CAGCAACAGCAGCAAGAAGAACAGCAGCAACATTGTGACCAGCGGCAGCC
ACAGATGGCAAGCCAACAGTTACAGCAACAACAGCAGCAGCCCCTATACG
AAAGAGCGCACTTGCTCGCGACTCCATCTACAAACTTTTCGCAACAGCAG
CAAACTGAACATTTATTACCGATGCAGGCGGGAGGAGCTTGCGCTATGGA
GTGTCTGTCATCCTCAGATCACTCGCATCAGGTGCAGCAGGTACAGGACC
ATGGACCGGTGCAGCTACAACAGTCATTAGAGCCTCCTCACAGCCATCGA
GGACGAGGGAGAGCACCTCCCGCGAGAGTTACAGGAGGAAGCGACAGCGG
TGTATTATCCGCTACCGGGGAGCGTTGGGGTCGCCGGCGAGCCGAGTCAG
ACCGAGCAGCACCCGCATCAGTATTACTGACGAAAGGAAATATATTTAAA
TGCGAGAAGACCCTGTTTAAAACAGAAAACTTAGCAGAATACGATTTTGA
AGAAAATTTGTTACGGACGCACGAAGCTGACACCTGCCTCGAATTGTTCG
TTTTGTGTGGAGTGGGAAAAGACACACAAGTTGTGAGGACTCCAGGAAGC
AAGCCTGAGCAAGTATACATTACCATTGGCAAGCGAAACATCATGGCCCG
GTCTTGCATTTTTCGTCTGGCACTGTTTTGTGCCATCCTCCTTTGCCTCT
CAGATGGATATGGAAAAACTTCAAACGACACATGCGAGGTGAAAGGGAAG
GAGGTAGTCGACAAGGTCACCGGGCTAGTCTTCCCCATGCACCGTATTCT
TCCTCACGGGGGCAGAGGCCGCGAGCTCACTCTCCTGGGGGTGGGTCCTA
GGCGGAAGAATCTCTTCGTTGTAGAGGTCAATGTGTATGCTGTGGGGCTG
TACTTGGAAACTTCCCTGCTGGGCCGGCTCAAAGCCTTTCGAGGCAAGAG
CTCGGAGGCCTTGGCCAAGGAGGCGAAATACTACGCCACCTTGATGAAAG
AAGGGTCCGGCTTGAACCGCGCCCTCTACCTGATTTTCGCGAGGACCGTC
CCGGCAGGGAAAATCGTGGAGGCGCTTGCGGCGGTGGACGGCGTCAAGAA
GGAGGTGATGGCTGATTTCAAGAAATCGCTGCTTGCAGCCATAGGCTCTT
CACTCAAGGAGAAAGAGACGTTGACACTGGCATGGACGCCGGACGATCGA
TTGTCTCTCTTTGTACGAGATAAACCTGTCAAAACATTTCCAAGCCTGGA
GCTTGCTCGAGGTATCTTCAACCTCTACCTTGGAGAGAAACCTATCTCTC
CCGAGGCCAAAAAGGGCTTTGCCGCTGTGGCCCCCCAACACATAAATTAG

protein sequence of rna8992

>rna8992-protein ID=rna8992-protein|Name=rna8992|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MGPTAGVVAASAGATTPADVFGALGIGGPPIEAAMALHRWLQGEEAGLDE
PRPRSSSIYFQPEGGIMSGHGVLEDTLSLFMVQAVIIITVTRLLSLGTKC
LKQPRVIMEVVGGILLGPSALGHIPGYLDTVFPSQSLGYLALVANIGLVL
YLFLVGVELDPEVLRRNGHKAVSIAVVGIAIPFGMGCLISPLLFNKLLVK
EPGYEGAAYSSFLVFVGVAMSITAFPVLARILLESKLILSTAGTPPLPLY
LEICARTSRPPGSATLASEPQALLSLPPSLPPSRRNDHGRRGPERRDRLV
LAGLGAFHRPLRGE

mRNA from alignment at KK037251.1:34436..36102+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8992 ID=rna8992|Name=rna8992|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp|location=Sequence derived from alignment at KK037251.1:34436..36102+ (Nannochloropsis gaditana)
atggggccCACTGCGGGGGTCGTAGCAGCGTCCGCAGGTGCGACAACGCC
AGCGGATGTGTTTGGGGCGCTTGGGATAGGAGGACCACCAAttgaggcgg
cgatggccttGCACCGTTGGctccaaggggaagaggcgggatTGGACGAG
CCCAGGCCACGCAGCAGCTCCATATACTTCCaaccggagggagggattat
GTCGGGGCATGGCGTGCTCGAGGATACTCTGTCGTTGTTCATGGTGCAGg
tgaggcggggaaaggaaggggagggagggggcttcTCTGTTACGATCCTA
TTGACCCTCCTCTCGGATTCGGTGGGGCTTCCCAGGcggtcatcatcatc
acagTGACACGCTTGCTCTCTTTGGGCACCAAATGCCTGAAGCAGCCGCG
CGTCatcatggaggtggtggggggcatCCTCCTGGGTGcgtgacaggaag
gagggctgggagggagggagggagagagagagagagggaggaagggaggg
gggagggaggggaggaagaggaagagagagagagaagaagggacggTGGC
GGTCGACACCCGTCTCCCTGACACGGCTGAccccatctcccccccctcca
ctccagGTCCGTCTGCCCTCGGACATATCCCCGGGTATCTGGACACGGTT
TTCCCGAGCCAGTCCCTCGGCTATCTGGCGCTGGTCGCCAACATCGGCCT
CgtcctctacctcttcctcgttggCGTCGAGCTGGACCCCGAGGTGCCTA
GTCCCGCGgaacgggggcggggaggggcctGGCGGGGAAGGTGCAGGATT
CCACGGTGACTCTGACCCTCTgtttctctcccctttccttgtaCTCCGCG
CGCCTTCTTCCAGGTCCTCCGTCGCAACGGGCACAAAGCGGTCTCGATCG
CCGTGGTTGGGATCGCCATCCCCTTCGGCATGGGCTGCctcatctccccc
ctcctcttcaacaaGCTCCTCGTCAAGGAGCCCGGGTaagcggggaggat
ggaagcggaggcagaaaggagaaggaagcaggcTCCTCCCAGTCGGATGA
TGCTGGTCGGCCTTTCTCGGCAATTTTCGTTGATTCGTATCTTTTCCCGG
GCCCAACCGTCGCCGTGTGGGCCCCTGGTCTGCGTGACTTGAGGCGCCCA
agtcttccctttccacgtCCGATACCCCCCACCGCTCTCTCgcgtgcttc
ctcctcctgatcTCACACCCGCCCGCTCGATCTGCCGCTTTCCACGCTCG
CCCTCTTGACAAGGACCCGTCGCCTCGCTCAagcgccctctttccctcac
tccctccctcccttctcgtcctccccacagGTACGAAGGCGCCGCCTACa
gctccttcctcgtctttgTGGGCGTGGCCATGTCTatcaccgccttcccc
gtcctcgcccgcaTCCTCCTGGAGTCCAAGCTCATCCTCTCCACGGCCGG
tacgccccccctccctctctattTGGAAATTTGCGCTCGGACTTCGCGTC
CACCGGGATCGGCCACCCTCGCTTCCGAGCCCCAagcccttctctccctc
cctccctccctccctccctctaggCGTAATGACCATGGGCGCCGCGGCCC
TGAACGACGCGATCGCCTGGTGCTTGCTGGTCTTGGCGCTTTCCATCGTC
CACTCCGGGGAGAATAA

Coding sequence (CDS) from alignment at KK037251.1:34436..36102+

>rna8992 ID=rna8992|Name=rna8992|organism=Nannochloropsis gaditana|type=CDS|length=4725bp|location=Sequence derived from alignment at KK037251.1:34436..36102+ (Nannochloropsis gaditana)
atggggccCACTGCGGGGGTCGTAGCAGCGTCCGCAGGTGCGACAACGCC
AGCGGATGTGTTTGGGGCGCTTGGGATAGGAGGACCACCAAttgaggcgg
cgatggccttGCACCGTTGGctccaaggggaagaggcgggatTGGACGAG
CCCAGGCCACGCAGCAGCTCCATATACTTCCaaccggagggagggattat
GTCGGGGCATGGCGTGCTCGAGGATACTCTGTCGTTGTTCATGGTGCAGG
cggtcatcatcatcacagTGACACGCTTGCTCTCTTTGGGCACCAAATGC
CTGAAGCAGCCGCGCGTCatcatggaggtggtggggggcatCCTCCTGGG
TCCGTCTGCCCTCGGACATATCCCCGGGTATCTGGACACGGTTTTCCCGA
GCCAGTCCCTCGGCTATCTGGCGCTGGTCGCCAACATCGGCCTCgtcctc
tacctcttcctcgttggCGTCGAGCTGGACCCCGAGGTCCTCCGTCGCAA
CGGGCACAAAGCGGTCTCGATCGCCGTGGTTGGGATCGCCATCCCCTTCG
GCATGGGCTGCctcatctcccccctcctcttcaacaaGCTCCTCGTCAAG
GAGCCCGGGTACGAAGGCGCCGCCTACagctccttcctcgtctttgTGGG
CGTGGCCATGTCTatcaccgccttccccgtcctcgcccgcaTCCTCCTGG
AGTCCAAGCTCATCCTCTCCACGGCCGGtacgccccccctccctctctat
tTGGAAATTTGCGCTCGGACTTCGCGTCCACCGGGATCGGCCACCCTCGC
TTCCGAGCCCCAagcccttctctccctccctccctccctccctccctcta
ggCGTAATGACCATGGGCGCCGCGGCCCTGAACGACGCGATCGCCTGGTG
CTTGCTGGTCTTGGCGCTTTCCATCGTCCACTCCGGGGAGAATAAatggg
gccCACTGCGGGGGTCGTAGCAGCGTCCGCAGGTGCGACAACGCCAGCGG
ATGTGTTTGGGGCGCTTGGGATAGGAGGACCACCAAttgaggcggcgatg
gccttGCACCGTTGGctccaaggggaagaggcgggatTGGACGAGCCCAG
GCCACGCAGCAGCTCCATATACTTCCaaccggagggagggattatGTCGG
GGCATGGCGTGCTCGAGGATACTCTGTCGTTGTTCATGGTGCAGGcggtc
atcatcatcacagTGACACGCTTGCTCTCTTTGGGCACCAAATGCCTGAA
GCAGCCGCGCGTCatcatggaggtggtggggggcatCCTCCTGGGTCCGT
CTGCCCTCGGACATATCCCCGGGTATCTGGACACGGTTTTCCCGAGCCAG
TCCCTCGGCTATCTGGCGCTGGTCGCCAACATCGGCCTCgtcctctacct
cttcctcgttggCGTCGAGCTGGACCCCGAGGTCCTCCGTCGCAACGGGC
ACAAAGCGGTCTCGATCGCCGTGGTTGGGATCGCCATCCCCTTCGGCATG
GGCTGCctcatctcccccctcctcttcaacaaGCTCCTCGTCAAGGAGCC
CGGGTACGAAGGCGCCGCCTACagctccttcctcgtctttgTGGGCGTGG
CCATGTCTatcaccgccttccccgtcctcgcccgcaTCCTCCTGGAGTCC
AAGCTCATCCTCTCCACGGCCGGtacgccccccctccctctctattTGGA
AATTTGCGCTCGGACTTCGCGTCCACCGGGATCGGCCACCCTCGCTTCCG
AGCCCCAagcccttctctccctccctccctccctccctccctctaggCGT
AATGACCATGGGCGCCGCGGCCCTGAACGACGCGATCGCCTGGTGCTTGC
TGGTCTTGGCGCTTTCCATCGTCCACTCCGGGGAGAATAAatggggccCA
CTGCGGGGGTCGTAGCAGCGTCCGCAGGTGCGACAACGCCAGCGGATGTG
TTTGGGGCGCTTGGGATAGGAGGACCACCAAttgaggcggcgatggcctt
GCACCGTTGGctccaaggggaagaggcgggatTGGACGAGCCCAGGCCAC
GCAGCAGCTCCATATACTTCCaaccggagggagggattatGTCGGGGCAT
GGCGTGCTCGAGGATACTCTGTCGTTGTTCATGGTGCAGGcggtcatcat
catcacagTGACACGCTTGCTCTCTTTGGGCACCAAATGCCTGAAGCAGC
CGCGCGTCatcatggaggtggtggggggcatCCTCCTGGGTCCGTCTGCC
CTCGGACATATCCCCGGGTATCTGGACACGGTTTTCCCGAGCCAGTCCCT
CGGCTATCTGGCGCTGGTCGCCAACATCGGCCTCgtcctctacctcttcc
tcgttggCGTCGAGCTGGACCCCGAGGTCCTCCGTCGCAACGGGCACAAA
GCGGTCTCGATCGCCGTGGTTGGGATCGCCATCCCCTTCGGCATGGGCTG
CctcatctcccccctcctcttcaacaaGCTCCTCGTCAAGGAGCCCGGGT
ACGAAGGCGCCGCCTACagctccttcctcgtctttgTGGGCGTGGCCATG
TCTatcaccgccttccccgtcctcgcccgcaTCCTCCTGGAGTCCAAGCT
CATCCTCTCCACGGCCGGtacgccccccctccctctctattTGGAAATTT
GCGCTCGGACTTCGCGTCCACCGGGATCGGCCACCCTCGCTTCCGAGCCC
CAagcccttctctccctccctccctccctccctccctctaggCGTAATGA
CCATGGGCGCCGCGGCCCTGAACGACGCGATCGCCTGGTGCTTGCTGGTC
TTGGCGCTTTCCATCGTCCACTCCGGGGAGAATAAatggggccCACTGCG
GGGGTCGTAGCAGCGTCCGCAGGTGCGACAACGCCAGCGGATGTGTTTGG
GGCGCTTGGGATAGGAGGACCACCAAttgaggcggcgatggccttGCACC
GTTGGctccaaggggaagaggcgggatTGGACGAGCCCAGGCCACGCAGC
AGCTCCATATACTTCCaaccggagggagggattatGTCGGGGCATGGCGT
GCTCGAGGATACTCTGTCGTTGTTCATGGTGCAGGcggtcatcatcatca
cagTGACACGCTTGCTCTCTTTGGGCACCAAATGCCTGAAGCAGCCGCGC
GTCatcatggaggtggtggggggcatCCTCCTGGGTCCGTCTGCCCTCGG
ACATATCCCCGGGTATCTGGACACGGTTTTCCCGAGCCAGTCCCTCGGCT
ATCTGGCGCTGGTCGCCAACATCGGCCTCgtcctctacctcttcctcgtt
ggCGTCGAGCTGGACCCCGAGGTCCTCCGTCGCAACGGGCACAAAGCGGT
CTCGATCGCCGTGGTTGGGATCGCCATCCCCTTCGGCATGGGCTGCctca
tctcccccctcctcttcaacaaGCTCCTCGTCAAGGAGCCCGGGTACGAA
GGCGCCGCCTACagctccttcctcgtctttgTGGGCGTGGCCATGTCTat
caccgccttccccgtcctcgcccgcaTCCTCCTGGAGTCCAAGCTCATCC
TCTCCACGGCCGGtacgccccccctccctctctattTGGAAATTTGCGCT
CGGACTTCGCGTCCACCGGGATCGGCCACCCTCGCTTCCGAGCCCCAagc
ccttctctccctccctccctccctccctccctctaggCGTAATGACCATG
GGCGCCGCGGCCCTGAACGACGCGATCGCCTGGTGCTTGCTGGTCTTGGC
GCTTTCCATCGTCCACTCCGGGGAGAATAAatggggccCACTGCGGGGGT
CGTAGCAGCGTCCGCAGGTGCGACAACGCCAGCGGATGTGTTTGGGGCGC
TTGGGATAGGAGGACCACCAAttgaggcggcgatggccttGCACCGTTGG
ctccaaggggaagaggcgggatTGGACGAGCCCAGGCCACGCAGCAGCTC
CATATACTTCCaaccggagggagggattatGTCGGGGCATGGCGTGCTCG
AGGATACTCTGTCGTTGTTCATGGTGCAGGcggtcatcatcatcacagTG
ACACGCTTGCTCTCTTTGGGCACCAAATGCCTGAAGCAGCCGCGCGTCat
catggaggtggtggggggcatCCTCCTGGGTCCGTCTGCCCTCGGACATA
TCCCCGGGTATCTGGACACGGTTTTCCCGAGCCAGTCCCTCGGCTATCTG
GCGCTGGTCGCCAACATCGGCCTCgtcctctacctcttcctcgttggCGT
CGAGCTGGACCCCGAGGTCCTCCGTCGCAACGGGCACAAAGCGGTCTCGA
TCGCCGTGGTTGGGATCGCCATCCCCTTCGGCATGGGCTGCctcatctcc
cccctcctcttcaacaaGCTCCTCGTCAAGGAGCCCGGGTACGAAGGCGC
CGCCTACagctccttcctcgtctttgTGGGCGTGGCCATGTCTatcaccg
ccttccccgtcctcgcccgcaTCCTCCTGGAGTCCAAGCTCATCCTCTCC
ACGGCCGGtacgccccccctccctctctattTGGAAATTTGCGCTCGGAC
TTCGCGTCCACCGGGATCGGCCACCCTCGCTTCCGAGCCCCAagcccttc
tctccctccctccctccctccctccctctaggCGTAATGACCATGGGCGC
CGCGGCCCTGAACGACGCGATCGCCTGGTGCTTGCTGGTCTTGGCGCTTT
CCATCGTCCACTCCGGGGAGAATAA

Synonyms

Publications