rna899, rna899 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna899
Unique Name	rna899
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3069
Alignment location	CM002456.1:677882..678983 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100022g8.845.mrna
Orig protein id	gnl\|cribi\|Naga_100022g8.845
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:677882..678983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g8	gene862	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna899	rna899-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29746.1	cds899	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:677882..678983+
coding sequence from alignment at CM002456.1:677882..678983+

mRNA sequence

>rna899 ID=rna899|Name=rna899|organism=Nannochloropsis gaditana|type=mRNA|length=3069bp
ATGTATGAACGCGTGTGTTGGCCTAGTGCACGGTGGTGTGTTGTAAACGG
ACGTTCCTCGCTCGCTCTCCGCCTGCTTTGTCGCTTACTTGTCTGCAAGA
TCTATTGGAGGTTTGGCGAATGGAACATGGCTTCTCCTGCCTCAAACATG
TTATCACAACATTCGTCGAAAACATCAAGCATGAAGAAAGAGGGGCTGCG
GATTCCTTTCCCATTCGAACCGTATCCTGCTCAAAAGGCATTGATGGAGC
AACTGTACAAGACAATTGATGCAGGTCATATAGGGCTCTTTGAGAGCCCT
ACCGGAACGGGAAAATCTCTGAGTTTGATATGCGCCAGCTTGTATTGGCT
GAGAGACCGGCAGCGGAGGGACGAGGCCGGCGAGGAGGATCCGCTGGCGG
CCCCTTCGCTCTCTTCCACACGTCATGGAGCTACGGCTATGGCTACGAAT
ACAGGTGGAGAAACTGAACCTGACTGGCTTCGGGACTACGGGAAGGTCAA
AGAGCGCGAGGCTGCAATCGAAAAGCGAAGAAAAATACGAGAACGACAGC
AAGCATTGCAGCATCGCTTAGAGGAAGCACGTCACGCTGATGATCGCTCG
AACACATTACGAAAAGAGAAGTACCTCCATGGCAATATTGGCCTGATGGA
ACGGTGTAAAAAAAGGCCTTTTGATGCCGGAAGAAGGGGGGATAAGAAAG
CTGAAGGCCTTTGGGATGACGAGGAGGATGCGGATTTGCTTCCCGTTAAA
TATGAAAGCGGGTGCGAACAAGACGATGACAGCGACAGGGAGAGTACGCC
CAATGACCTTGCATACGGGATAGATAAGGAGGGTGATGAGGGCGAGGAAT
TGGATCGCAACACCCGAAAGATCCTTTATTGCAGTCGAACGCATTCTCAG
GTGTCACAGTTCGTGATGGAGATCCAAAAGACTGATTTTCGGGACGACGT
CCGTGTCATCTCCTTGAGCTCGAGGAAGAACCTGTGCATTAACGAGGAGG
TGCTGAAATTAGGGAGTGACAGCCGCATCAGCGATCGTTGCCTGGATTTG
CAAAAGGGAAAAAACACAAATATTGTCGTGTCAGACATGCAATCCGACCA
AAAACACACTTCCGATAAAGCTGATAGCAAAGGTACGAAGAAGCGCCCGC
GCGCTGATGCGTCGAAACGACAAGTGAAGTGTCCATTCCTCCTGGAGCGG
GATCAGCGGCAGGACTTATACCGGGACTACGCCTTGAGTAAGATTCGGAA
CTTGGAGGATCTGGCGGCGCTTGGAAAGAAGCTAGATACATGCCCGTACT
ATGGGACGCGGCGGGCAGTAGCTCAGGCGGAAGTCATCTGTATGCCATAT
GCGACTCTCTTACACAAAGGGACACGAGAATCCATGAAAATTCCTCTCAA
AGGCAACGTGGTGCTCATCGACGAGGCTCACAATCTGGTTGAAGCCATTA
ACGCTGTGCACACAACGCAGCTTTCATTGCAGGTGATGAGTCGCGCACTC
AATCAAATTACGCTCTACTGGGAGCGGTATAAGTCTCGTCTCAGTGGGAA
AAATACGGTGTACGTACAACAAATAATTCGACTTCTGGGAGGTTTGGTGA
AGTTTGTTCGTAGGAAAGCATCTCCACATGTGTTGGCTACCACTTCTGCG
ACTGGACAGGAGGACGCCTCGGCGACGGTGATCATGACTGTGAACGAGCT
TGTCTTTGAGGCCGGTATGGACAATGTGAACCTGTTCAAAGTGGTAAGAT
ACATGGAGCAAAGTCAAATATCGAAAAAGGTTTTGGGATTCGTGGACCGA
CGCGGGACTGAGGTGCAAATTCACGGATCTGAGAGCACATTCCCCGCAAC
ATGCTCACCTTCACAAGCCACTGACGCGGGAGTTCATGGAGAGTCCTCGG
CAGGACTTGGAGATTATGTCAGCAACAACATATCGTCGTTGCAAAACGTG
CAGACTTTTTTGGTGACCCTGACTGGATCTAGTCGAGACGGACGTATTGT
CCTCGAAACTGGGCACGGACCTCAGAAGGGGCGCCGGCAGATGGCGGCAG
GGATTAAATTTATCATGCTCAATGCTGCTGTACATTTCCGAGAAATAGTA
TCTGAGGCACGCTCAGTGGTGCTGGTGGGCGGAACCATGCAACCTGTGGC
GCCCATTGTGGCACAGCTTTTTCCAGATTTGCCGATATCACGTCTTGACG
TGTTCTCGTGTGGCCATGTGATTCCACCTCAAAACCTGTTAGCTCTGTGT
ATGAGCAAAGGTCCTACAGGCATCGACTTTGATTTCACCCATAAAAGTCG
AGGTCTTGTTCAGCAAATGGACGAACTTGGTCGACTGCTGCTCAATGTCT
CTACCGTTACACCCGGTGGGTTGGTTGTTTTTCTACCTTCGTATGCTTAC
GAAGAAAAGTTGATGACTCGTTGGAGAGAAAGCAATTTGTTGTCCAAATT
ACGCTCCAAGAAATCGATCTTTAGTGAACCCAAGCAGGCTAAAGACGTAG
AAGCCACCTTGCAGGCCTACTCAGCGGCCATAGCCGAAGGTGAAATACAT
CGTAAGGAACAGTGCAGTGGCAGTGGCTCTGTTGGTGCAATTCTTTTTTG
CGTAGTTGGCGCAAAGATGTCAGAAGGTATCAATTTTGCTGATGGTATGG
CTCGCGGTGTCGTGATGGTTGGATTGCCGTATCCAGATCGCCGGGATCCA
GAATTGCAGCAAAAAATGCAATATTTGGATAGTTTGCAATTCTTCAAAGG
AGCAGCTGCAGCCAACGATAATACTATGCGTTCAAATACGGAGAAGTGCA
TTGCCATTGGAGCTACTTGCGGCAAGACTTACTATCAAAATTTATGCATG
CGCGCAGTTAATCAGTCTATCGGGCGGGCTATAAGGCACGCGAATGACTG
GGCAGCCATAATTCTCGTGGATCGACGCTATTTTGCTGATCCCTCGATTG
TTTCTCTTCTACCTAAATGGATTGCAGATCGTATCGTACCTTATAACCAT
AGTCAGAATTTTGGCCGGGCATTCGTTCAACTTTCAAGATTTTTTAAAGA
TAAAGTGGATGATAAATAA

protein sequence of rna899

>rna899-protein ID=rna899-protein|Name=rna899|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MSCRGDHIDSCGHGHDHAHGEECDHEAEDPDGQSMFAAIDTSKVRCLNEN
EIGACLHPFKLYNKRREPEPRLDSHDDDPELLLFVPFTRIVKLKSINIIG
GHAGEGTAPTKIKLFVNRDDIDFGNCNELMAAQELELVANAAAMGDGGGI
DYPLKVSKFQNVSSLTIFFSENGGGDVTSVSYVGFKGEITSVRHGVVECV
YESAPQAADHKQDAGEHLMPDVAGN

mRNA from alignment at CM002456.1:677882..678983+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna899 ID=rna899|Name=rna899|organism=Nannochloropsis gaditana|type=mRNA|length=1102bp|location=Sequence derived from alignment at CM002456.1:677882..678983+ (Nannochloropsis gaditana)
TGTGGATGTAACCAGGCGCACCACACGGCTACACAGGAACCACTTCTCTT
GATGAGTTGTCGAGGAGATCACATTGATTCATGCGGCCACGGGCATGATC
ATGCCCATGGCGAGGAATGGTACGGTGAACGGGTAATGGGAGAGAGAGTG
GCTGATTTATCTTGGCGTGACTTAAATCCGAGTTGCAGTGATTCGTTTAT
GGTCGGAAAAGTTTAAGGCAACATCTTCTTCCCGCAattccctccgttcc
cctcAACATAGCGATCATGAAGCGGAAGATCCTGATGGTCAATCTATGTT
TGCGGCCATCGACACGAGCAAGGTTCGATGTCTAAATGAAAACGAAATTG
GAGCATGCTTGCACCCTTTCAAGCTGTACAACAAACGTCGAGAGCCCGAG
CCTCGACTAGACAGCCACGATGACGACCCGGAGCTATTACTCTTTGTACC
CTTCACACGCATTGTGAAATTGAAGAGTATCAATATAATTGGGGGCCATG
CCGGTGAAGGCACGGCGCCGACTAAAATCAAATTGTAGGTGAACGATGTA
AAAATCACTACGCTGGAACCCTCACGAGGCTTAAGTGGAAGAGAGCGTAT
TTTCTAAGTTTGTGAGTCTTGTAGTTGTATTTTTTGACTCACCACTTCTT
TTTTTGTCGGTTTTTGACTCCCGCTCAGGTTCGTAAATCGCGATGACATC
GATTTTGGTAACTGCAACGAGTTGATGGCGGCTCAAGAATTGGAACTCGT
TGCAAATGCCGCCGCAATGGGTGACGGGGGTGGAATAGACTATCCTCTGA
AAGTGAGCAAATTCCAGAACGTGAGCAGCCTGACCATCTTTTTCAGCGAG
AATGGAGGTGGCGACGTTACATCTGTTTCCTACGTAGGATTCAAAGGCGA
GATAACCTCGGTGCGGCATGGGGTCGTCGAATGCGTGTATGAGTCTGCCC
CTCAGGCGGCCGATCACAAACAGGACGCTGGGGAACACTTAATGCCGGAT
GTTGCTGGAAATTGAGCGGTATTAACAAGCGGCAGGTGGGAGTAGAAGCA
GAGCGCATATGTATATACCCAAAGAATCCGGGACGCCGGGCGAGGTAGTA
AG

Coding sequence (CDS) from alignment at CM002456.1:677882..678983+

>rna899 ID=rna899|Name=rna899|organism=Nannochloropsis gaditana|type=CDS|length=2034bp|location=Sequence derived from alignment at CM002456.1:677882..678983+ (Nannochloropsis gaditana)
ATGAGTTGTCGAGGAGATCACATTGATTCATGCGGCCACGGGCATGATCA
TGCCCATGGCGAGGAATGCGATCATGAAGCGGAAGATCCTGATGGTCAAT
CTATGTTTGCGGCCATCGACACGAGCAAGGTTCGATGTCTAAATGAAAAC
GAAATTGGAGCATGCTTGCACCCTTTCAAGCTGTACAACAAACGTCGAGA
GCCCGAGCCTCGACTAGACAGCCACGATGACGACCCGGAGCTATTACTCT
TTGTACCCTTCACACGCATTGTGAAATTGAAGAGTATCAATATAATTGGG
GGCCATGCCGGTGAAGGCACGGCGCCGACTAAAATCAAATTGTTCGTAAA
TCGCGATGACATCGATTTTGGTAACTGCAACGAGTTGATGGCGGCTCAAG
AATTGGAACTCGTTGCAAATGCCGCCGCAATGGGTGACGGGGGTGGAATA
GACTATCCTCTGAAAGTGAGCAAATTCCAGAACGTGAGCAGCCTGACCAT
CTTTTTCAGCGAGAATGGAGGTGGCGACGTTACATCTGTTTCCTACGTAG
GATTCAAAGGCGAGATAACCTCGGTGCGGCATGGGGTCGTCGAATGCGTG
TATGAGTCTGCCCCTCAGGCGGCCGATCACAAACAGGACGCTGGGGAACA
CTTAATGCCGGATGTTGCTGGAAATTGAATGAGTTGTCGAGGAGATCACA
TTGATTCATGCGGCCACGGGCATGATCATGCCCATGGCGAGGAATGCGAT
CATGAAGCGGAAGATCCTGATGGTCAATCTATGTTTGCGGCCATCGACAC
GAGCAAGGTTCGATGTCTAAATGAAAACGAAATTGGAGCATGCTTGCACC
CTTTCAAGCTGTACAACAAACGTCGAGAGCCCGAGCCTCGACTAGACAGC
CACGATGACGACCCGGAGCTATTACTCTTTGTACCCTTCACACGCATTGT
GAAATTGAAGAGTATCAATATAATTGGGGGCCATGCCGGTGAAGGCACGG
CGCCGACTAAAATCAAATTGTTCGTAAATCGCGATGACATCGATTTTGGT
AACTGCAACGAGTTGATGGCGGCTCAAGAATTGGAACTCGTTGCAAATGC
CGCCGCAATGGGTGACGGGGGTGGAATAGACTATCCTCTGAAAGTGAGCA
AATTCCAGAACGTGAGCAGCCTGACCATCTTTTTCAGCGAGAATGGAGGT
GGCGACGTTACATCTGTTTCCTACGTAGGATTCAAAGGCGAGATAACCTC
GGTGCGGCATGGGGTCGTCGAATGCGTGTATGAGTCTGCCCCTCAGGCGG
CCGATCACAAACAGGACGCTGGGGAACACTTAATGCCGGATGTTGCTGGA
AATTGAATGAGTTGTCGAGGAGATCACATTGATTCATGCGGCCACGGGCA
TGATCATGCCCATGGCGAGGAATGCGATCATGAAGCGGAAGATCCTGATG
GTCAATCTATGTTTGCGGCCATCGACACGAGCAAGGTTCGATGTCTAAAT
GAAAACGAAATTGGAGCATGCTTGCACCCTTTCAAGCTGTACAACAAACG
TCGAGAGCCCGAGCCTCGACTAGACAGCCACGATGACGACCCGGAGCTAT
TACTCTTTGTACCCTTCACACGCATTGTGAAATTGAAGAGTATCAATATA
ATTGGGGGCCATGCCGGTGAAGGCACGGCGCCGACTAAAATCAAATTGTT
CGTAAATCGCGATGACATCGATTTTGGTAACTGCAACGAGTTGATGGCGG
CTCAAGAATTGGAACTCGTTGCAAATGCCGCCGCAATGGGTGACGGGGGT
GGAATAGACTATCCTCTGAAAGTGAGCAAATTCCAGAACGTGAGCAGCCT
GACCATCTTTTTCAGCGAGAATGGAGGTGGCGACGTTACATCTGTTTCCT
ACGTAGGATTCAAAGGCGAGATAACCTCGGTGCGGCATGGGGTCGTCGAA
TGCGTGTATGAGTCTGCCCCTCAGGCGGCCGATCACAAACAGGACGCTGG
GGAACACTTAATGCCGGATGTTGCTGGAAATTGA

Synonyms

Publications