rna8978, rna8978 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8978
Unique Name	rna8978
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	990
Alignment location	KK037250.1:618516..620938 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101008g2.2153.mrna
Orig protein id	gnl\|cribi\|Naga_101008g2.2153
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:618516..620938 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101008g2	gene8703	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21725.1	cds8948	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8978	rna8978-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:618516..620938-
coding sequence from alignment at KK037250.1:618516..620938-

mRNA sequence

>rna8978 ID=rna8978|Name=rna8978|organism=Nannochloropsis gaditana|type=mRNA|length=990bp
GCAGGAACATTGTAAGACTGTGGATCGATGGGGCATGTGACATCGTGGTG
TCTCCTCTTCCACTGATGTCGATTCCTCCCGTCCTTCCCTCCCTCCCTCC
CTCCCTTCCTCTCTCCCTCCCTCCCAGGCCTCGGTGGTGATCAATTTCGA
CCTGTGCGACCCCCAGCGCTACATGCAGCGCATCGGCCGTGTCGGGCGCT
TCGGACGCGCGGGGACAGCCATTTCCATCATCCCGCCCTACCAGGTCGAC
AAGAGCAGCGGCCGCAACTACTCGATCCAGCATATCACCGAGGCCTACCA
CAACACGATCAACCGATGGGACTTCCTGCAGGGCGACTACCCCCCCCGGG
ACCCATTCGTCCTCCAACTCCCGGGTTTTGGGATCGAGCAAGACCTCTTG
AACGGGGCCCGCGAGGCAGAGGCGGAGGCAGCGGCGGAGGCAGGGGTGGA
GGGCCTGTCCAAGGGGATGGCTGAGATGGGGGTGGGTAATTGAAGGGGGG
AAAGAGGGGGTTGGCCCCAGGGGAGAGGGGAACGGAAAGATGGTATGGAT
GCCTCTTTAAAGGGGGGGTTGGATCATTTGCAGTGGAGGAAGCGGGGGTA
GGGTACGCAGAGAAGATCATCTGCAGAGAACTTTTGGGGGCGCGAAGGAG
GAGGGTAGGATATGGAGAGGACTTGTGAAGCAACAAGGACAAGGGAGGGC
GATGCAGAGAAATCTGGGGGCATACGGGACGAGGGCGGGGAAGGAAACTT
GACTCGGTCCCGGAGGGTGGTTTTCAGTTTGGCAATTTGCAGCACGTGAA
TAAAAAAGTCCTTTGTCGGTAGAGTCCTCACCCCGGCTTTACCCTCCGCG
TGGCTGTCCCTGGACGGGGGGAGGAGCACGGCGGGCTTAAGGCGATGAGG
GGGGTGGCGGGTGGGAGGCGCGAGGGAATATGGGCCGCCACGCCTGTCAT
GGGTAGAGGACGCAAAGAAGGGTGCCGAGAAACTGTTTCG

protein sequence of rna8978

>rna8978-protein ID=rna8978-protein|Name=rna8978|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MTEDSVLQRRQLLNQALRARTTRRTGTLRGKERGREPAPKAGEEGVEGEE
GEAADPGGLEVLLSQLTGPKITSDMQAFKAANPHAVLADFLRWQVPEAWV
PGEGGVEGEAEGEAEEVAMEWGSLGHLDRAQVEAHWNLPLGRLVAFWREA
PAIPAARQAPLFQEALAAEQVLHFLETLSPASLLCQALAAGFATVLCLLR
HAPTPTVHGPATQAALDQLEGLIDEAISHLHDHQTTSEAMLFPPPSSSPS
RPPSPPSRGPVSQACLTACERVCLAVARIENRLRCTTALWQVLPAQMRLI
EGMVEGWEGGEGKGRGGERAPMPLRDDSERTAVLKLFNSAGGFVEGGALL
EEEEEEEEEEGDKGGEEGEEGKKVEEGEEDGEGANGRERKKEGGMVVLRK
EKGRNQEGRRGGREGEEEEEEELLHEYSDRQERRRSKLSSCSDLPIPARR
IMAEKKDRDGGGGKKGADRQEEGGKQGEEGEEDALPPYVEAGMPSPPEVK
TYVLRLTDMNPFYPRMAPGEGEGRGGGREGGRMREGLASSLAVTSRLFAS
MDRKEDSLRLALAHAESEV

mRNA from alignment at KK037250.1:618516..620938-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8978 ID=rna8978|Name=rna8978|organism=Nannochloropsis gaditana|type=mRNA|length=2423bp|location=Sequence derived from alignment at KK037250.1:618516..620938- (Nannochloropsis gaditana)
ATGACCGAAGACAGTGTTCTGCAGCGGCGGCAGCTCTTGAACCAAGCCTT
GCGGGCAAGGACGACAAGGAGGACGGGCACGTTGAGGGGGAAGGAACGGG
GGCGAGAGCCGGCGCCGAAGGCGGGGGAGGAGGGGGTGGAGGGGGAGGAA
GGGGAAGCAGCAGACCCGGGCGGGCTGGAGGTGTTGTTGAGTCAACTGAC
AGGGCCCAAGATCACGTCGGACATGCAAGCTTTCAAGGCCGCGAATCCCC
ACGCCGTCCTGGCCGATTTCCTTCGGTGGCAGGTCCCCGAGGCCTGGGTG
CCGGGGGAGGGCGGGGTGGAGGGGGAGGCCGAAGGCGAGGCGGAGGAGGT
GGCGATGGAATGGGGAAGTTTGGGGCACTTGGACCGGGCACAGGTAGAGG
CGCATTGGAATTTGCCTCTGGGTCGGCTGGTTGCCTTCTGGAGAGAGGCA
CCGGCCATCCCCGCCGCCCGGCAAGCCCCTCTCTTCCAGGAGGCCCTCGC
GGCCGAGCAAGTGCTGCATTTCCTAGAGACGTTGTCGCCCGCCTCCCTCC
TTTGCCAGGCCTTGGCCGCGGGTTTTGCCACCGTCCTTTGCCTCCTCCGC
CACGCCCCGACCCCGACCGTGCACGGGCCCGCCACTCAGGCGGCTCTCGA
CCAATTGGAGGGACTGATTGACGAGGCTATCAGTCACCTCCATGACCACC
AAACCACGTCGGAGGCCATGCTCTTCCCCCCTCCCTCCTCCTCCCCTTCC
CGCCCTCCCTCCCCTCCTTCCAGAGGACCGGTCAGCCAGGCGTGTTTGAC
GGCGTGCGAGCGCGTCTGCTTAGCCGTTGCCCGGATCGAAAACCGATTGC
GGTGCACCACGGCCCTTTGGCAGGTCCTCCCGGCTCAAATGCGTCTCATC
GAAGGGATGGTGGAGGGGTGGGAGGGAGGGGAAGGAAAAGGCAGGGGGGG
AGAGCGGGCGCCCATGCCATTGCGAGACGATTCGGAGCGGACGGCGGTCT
TAAAGTTGTTCAACAGTGCCGGTGGTTTCGTGGAGGGGGGCGCTCTGTTG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGACAAGGGTGGGGAGGA
GGGGGAGGAGGGAAAGAAGGTTGAGGAGGGGGAGGAAGACGGCGAGGGAG
CGAATGGAAGGGAAAGGAAGAAGGAGGGAGGGATGGTTGTGCTTCGAAAA
GAGAAAGGAAGGAATCAAGAAGGGAGAAGGGGGGGAAGGGAGGGAGAGGA
GGAGGAGGAGGAGGAGCTCTTGCACGAGTACAGCGACAGGCAGGAGAGAC
GGCGGAGCAAGCTCTCTTCCTGTTCTGACTTGCCGATACCTGCAAGAAGG
ATCATGGCGGAGAAGAAGGACAGGGACGGGGGGGGAGGAAAGAAAGGGGC
CGACCGCCAGGAGGAGGGAGGGAAGCAGGGGGAGGAAGGGGAGGAGGACG
CCCTCCCTCCCTACGTGGAGGCTGGCATGCCCTCCCCTCCCGAAGTGAAG
ACTTACGTCCTCAGGCTCACGGACATGAATCCCTTCTACCCCAGAATGGC
GCCCGGAGAGGGGGAGGGAAGGGGGGGAGGGAGGGAGGGCGGGCGGATGA
GAGAGGGGCTTGCCTCCTCCTTGGCCGTGACCAGTCGGCTGTTCGCTTCA
ATGGACAGGAAGGAAGACAGCCTGCGCTTGGCCCTGGCGCATGCCGAGTC
CGAGGTGTAGGGACAACAAGGAAGGAGGGAGGGAGGGAGAAAGAGGGTAA
GGGCGCAGGGTCACGGAGGGGTGGAGGAGACGGGTCATGTACAAAGCTTC
GGTAATAAAGGCCCCGGCCACAAAAGGAACATCAACGCCCATAAGTACAG
GAACAAAAAGGCCAACGAAGCGTCCCCCGAAACAGTTTCTCGGCACCCTT
CTTTGCGTCCTCTACCCATGACAGGCGTGGCGGCCCATATTCCCTCGCGC
CTCCCACCCGCCACCCCCCTCATCGCCTTAAGCCCGCCGTGCTCCTCCCC
CCGTCCAGGGACAGCCACGCGGAGGGTAAAGCCGGGGTGAGGACTCTACC
GACAAAGGACTTTTTTATTCACGTGCTGCAAATTGCCAAACTGAAAACCA
CCCTCCGGGACCGAGTCAAGTTTCCTTCCCCGCCCTCGTCCCGTATGCCC
CCAGATTTCTCTGCATCGCCCTCCCTTGTCCTTGTTGCTTCACAAGTCCT
CTCCATATCCTACCCTCCTCCTTCGCGCCCCCAAAAGTTCTCTGCAGATG
ATCTTCTCTGCGTACCCTACCCCCGCTTCCTCCACTGCAAATGATCCAAC
CCCCCCTTTAAAGAGGCATCCATACCATCTTTCCGTTCCCCTCTCCCCTG
GGGCCAACCCCCTCTTTCCCCCCTTCAATTACCCACCCCCATCTCAGCCA
TCCCCTTGGACAGGCCCTCCACC

Coding sequence (CDS) from alignment at KK037250.1:618516..620938-

>rna8978 ID=rna8978|Name=rna8978|organism=Nannochloropsis gaditana|type=CDS|length=1710bp|location=Sequence derived from alignment at KK037250.1:618516..620938- (Nannochloropsis gaditana)
ATGACCGAAGACAGTGTTCTGCAGCGGCGGCAGCTCTTGAACCAAGCCTT
GCGGGCAAGGACGACAAGGAGGACGGGCACGTTGAGGGGGAAGGAACGGG
GGCGAGAGCCGGCGCCGAAGGCGGGGGAGGAGGGGGTGGAGGGGGAGGAA
GGGGAAGCAGCAGACCCGGGCGGGCTGGAGGTGTTGTTGAGTCAACTGAC
AGGGCCCAAGATCACGTCGGACATGCAAGCTTTCAAGGCCGCGAATCCCC
ACGCCGTCCTGGCCGATTTCCTTCGGTGGCAGGTCCCCGAGGCCTGGGTG
CCGGGGGAGGGCGGGGTGGAGGGGGAGGCCGAAGGCGAGGCGGAGGAGGT
GGCGATGGAATGGGGAAGTTTGGGGCACTTGGACCGGGCACAGGTAGAGG
CGCATTGGAATTTGCCTCTGGGTCGGCTGGTTGCCTTCTGGAGAGAGGCA
CCGGCCATCCCCGCCGCCCGGCAAGCCCCTCTCTTCCAGGAGGCCCTCGC
GGCCGAGCAAGTGCTGCATTTCCTAGAGACGTTGTCGCCCGCCTCCCTCC
TTTGCCAGGCCTTGGCCGCGGGTTTTGCCACCGTCCTTTGCCTCCTCCGC
CACGCCCCGACCCCGACCGTGCACGGGCCCGCCACTCAGGCGGCTCTCGA
CCAATTGGAGGGACTGATTGACGAGGCTATCAGTCACCTCCATGACCACC
AAACCACGTCGGAGGCCATGCTCTTCCCCCCTCCCTCCTCCTCCCCTTCC
CGCCCTCCCTCCCCTCCTTCCAGAGGACCGGTCAGCCAGGCGTGTTTGAC
GGCGTGCGAGCGCGTCTGCTTAGCCGTTGCCCGGATCGAAAACCGATTGC
GGTGCACCACGGCCCTTTGGCAGGTCCTCCCGGCTCAAATGCGTCTCATC
GAAGGGATGGTGGAGGGGTGGGAGGGAGGGGAAGGAAAAGGCAGGGGGGG
AGAGCGGGCGCCCATGCCATTGCGAGACGATTCGGAGCGGACGGCGGTCT
TAAAGTTGTTCAACAGTGCCGGTGGTTTCGTGGAGGGGGGCGCTCTGTTG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGACAAGGGTGGGGAGGA
GGGGGAGGAGGGAAAGAAGGTTGAGGAGGGGGAGGAAGACGGCGAGGGAG
CGAATGGAAGGGAAAGGAAGAAGGAGGGAGGGATGGTTGTGCTTCGAAAA
GAGAAAGGAAGGAATCAAGAAGGGAGAAGGGGGGGAAGGGAGGGAGAGGA
GGAGGAGGAGGAGGAGCTCTTGCACGAGTACAGCGACAGGCAGGAGAGAC
GGCGGAGCAAGCTCTCTTCCTGTTCTGACTTGCCGATACCTGCAAGAAGG
ATCATGGCGGAGAAGAAGGACAGGGACGGGGGGGGAGGAAAGAAAGGGGC
CGACCGCCAGGAGGAGGGAGGGAAGCAGGGGGAGGAAGGGGAGGAGGACG
CCCTCCCTCCCTACGTGGAGGCTGGCATGCCCTCCCCTCCCGAAGTGAAG
ACTTACGTCCTCAGGCTCACGGACATGAATCCCTTCTACCCCAGAATGGC
GCCCGGAGAGGGGGAGGGAAGGGGGGGAGGGAGGGAGGGCGGGCGGATGA
GAGAGGGGCTTGCCTCCTCCTTGGCCGTGACCAGTCGGCTGTTCGCTTCA
ATGGACAGGAAGGAAGACAGCCTGCGCTTGGCCCTGGCGCATGCCGAGTC
CGAGGTGTAG

Synonyms

Publications