rna8976, rna8976 (mRNA) Nannochloropsis gaditana

Overview
Namerna8976
Unique Namerna8976
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length426
Alignment locationKK037250.1:617091..617849 +

Link to JBrowse

Properties
Property NameValue
Producteukaryotic initiation factor 4a
Orig transcript idgnl|cribi|Naga_102530g1.9712.mrna
Orig protein idgnl|cribi|Naga_102530g1.9712
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:617091..617849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102530g1gene8701Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8976rna8976-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21727.1cds8946Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8976 ID=rna8976|Name=rna8976|organism=Nannochloropsis gaditana|type=mRNA|length=426bp
ATGTGTGGTTCTGGTACAGACAGGGGCAAGAAAGTAATCCAAGCAGCACA
AGCCCTCTCGCACACCATGGCGGACAGCTGGGATGAAGAAAACAAAGACA
AGGAGACAACACGCAGCGCGCCTCAGAAGTCGTGGGCGGACGACGATGAT
GACTTTACGCCAGTGCGGCCTACTGTGCAAAAGGAAGTGACCTACCCTGC
CCCACAGCGCACAGCGGTGGGGCCATCGCGGGATGGGGGATTTGGCGGCG
CCACTGCGGCCTCCCGGGACTTCAGTGACGGACGAGGTGCCCGTGGAGAG
GGAGATTTCTCCAATTTCGGGTCCCGTCGTGGCTCAGGACGGGGAGGGGG
CAGGGAGGGGGGTTACAGGGGGTCGTGGGGGCCGGCGCGGGGGCCGGGGG
GGAGGAGGGGTGCGCCAGCAGGTTGA
back to top

protein sequence of rna8976

>rna8976-protein ID=rna8976-protein|Name=rna8976|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTA
EIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGG
DHGEDCRPGGGREGGREGGREG
back to top

mRNA from alignment at KK037250.1:617091..617849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8976 ID=rna8976|Name=rna8976|organism=Nannochloropsis gaditana|type=mRNA|length=759bp|location=Sequence derived from alignment at KK037250.1:617091..617849+ (Nannochloropsis gaditana)
CAGCCTCTCTTGGACGGCAAGAACATGCTCTTGCAGGCGCAATCAGGACA
TGGGAAGACAGCCATATTCGCCACGGCCATCCTGAACAACATAGACACGa
gtaaggaagagggggcgaaaggagggctgtcaggcagggagggaggaacg
agggagggattgagagagggagggaaggaaggaggccacTTTCGTAACGT
TGCTTCTATGAGCGAGGTGTCTACGATCGTTCTAGCTCTCACTcctactt
ccctccctccttccctccctccttccctcccttcccgccggcAGATGCCC
CTGCTAAGGAGGCGATCCAGGCCATTGTCCTGGTGCCTAACCGGGACCTT
GCGCGACAGGTGACGGCCGAGATCGAGTCCTTGGGCCAGTACCTGGAGCC
GCCGGTGggtggcgtgggagggagggagggagggcgagggagggagggag
ggcaggaaggtgGAAGTTCGGACGAGTCTCGGTGcagtggaaggagaggg
gtgcttgtccctccccgtcctccctcccacccatccTCGCGCCCTTCtca
ccctttttctcctccttctcatccctgTAGCTCCGGATCCAATGCTGTGT
TGGCTCGCCTAACAcgaagacggaggaagcgcgCGACGAGCGCATTGCCC
TGGTCAAGACACTCCGGATCAcaccccccccacgtcctggTGGGGACCAT
GGGGAGGATTGTCGACCTGgcggaggtagggagggaggaagggagggagg
gagggaggg
back to top

Coding sequence (CDS) from alignment at KK037250.1:617091..617849+

>rna8976 ID=rna8976|Name=rna8976|organism=Nannochloropsis gaditana|type=CDS|length=1095bp|location=Sequence derived from alignment at KK037250.1:617091..617849+ (Nannochloropsis gaditana)
ATGCTCTTGCAGGCGCAATCAGGACATGGGAAGACAGCCATATTCGCCAC
GGCCATCCTGAACAACATAGACACGaATGCCCCTGCTAAGGAGGCGATCC
AGGCCATTGTCCTGGTGCCTAACCGGGACCTTGCGCGACAGGTGACGGCC
GAGATCGAGTCCTTGGGCCAGTACCTGGAGCCGCCGCTCCGGATCCAATG
CTGTGTTGGCTCGCCTAACAcgaagacggaggaagcgcgCGACGAGCGCA
TTGCCCTGGTCAAGACACTCCGGATCAcaccccccccacgtcctggTGGG
GACCATGGGGAGGATTGTCGACCTGgcggaggtagggagggaggaaggga
gggagggagggagggATGCTCTTGCAGGCGCAATCAGGACATGGGAAGAC
AGCCATATTCGCCACGGCCATCCTGAACAACATAGACACGaATGCCCCTG
CTAAGGAGGCGATCCAGGCCATTGTCCTGGTGCCTAACCGGGACCTTGCG
CGACAGGTGACGGCCGAGATCGAGTCCTTGGGCCAGTACCTGGAGCCGCC
GCTCCGGATCCAATGCTGTGTTGGCTCGCCTAACAcgaagacggaggaag
cgcgCGACGAGCGCATTGCCCTGGTCAAGACACTCCGGATCAcacccccc
ccacgtcctggTGGGGACCATGGGGAGGATTGTCGACCTGgcggaggtag
ggagggaggaagggagggagggagggagggATGCTCTTGCAGGCGCAATC
AGGACATGGGAAGACAGCCATATTCGCCACGGCCATCCTGAACAACATAG
ACACGaATGCCCCTGCTAAGGAGGCGATCCAGGCCATTGTCCTGGTGCCT
AACCGGGACCTTGCGCGACAGGTGACGGCCGAGATCGAGTCCTTGGGCCA
GTACCTGGAGCCGCCGCTCCGGATCCAATGCTGTGTTGGCTCGCCTAACA
cgaagacggaggaagcgcgCGACGAGCGCATTGCCCTGGTCAAGACACTC
CGGATCAcaccccccccacgtcctggTGGGGACCATGGGGAGGATTGTCG
ACCTGgcggaggtagggagggaggaagggagggagggagggaggg
back to top
Synonyms
Publications