EWM21727.1, cds8946 (CDS) Nannochloropsis gaditana

Overview
NameEWM21727.1
Unique Namecds8946
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:617115..617190 +
Alignment locationKK037250.1:617385..617494 +
Alignment locationKK037250.1:617671..617849 +

Link to JBrowse

Properties
Property NameValue
End range.
End range617849
Protein idEWM21727.1
Producteukaryotic initiation factor 4a
Partialtrue
Orig transcript idgnl|cribi|Naga_102530g1.9712.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:617115..617190 +
KK037250.1supercontigKK037250.1:617385..617494 +
KK037250.1supercontigKK037250.1:617671..617849 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
Homology
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|585102051|gb|EWM21727.1| (eukaryotic initiation factor 4a, partial [Nannochloropsis gaditana])

HSP 1 Score: 246.128 bits (627), Expect = 1.569e-82
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGGDHGEDCRPGGGREGGREGGREG 122
            MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGGDHGEDCRPGGGREGGREGGREG
Sbjct:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGGDHGEDCRPGGGREGGREGGREG 122          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|164657394|ref|XP_001729823.1| (hypothetical protein MGL_2809 [Malassezia globosa CBS 7966] >gi|159103717|gb|EDP42609.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966])

HSP 1 Score: 68.1662 bits (165), Expect = 4.831e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P  +A+QA+VL P R+LA+Q+   + +LG Y+     IQC  C+G  N + + AR
Sbjct:   69 VIAQAQSGTGKTATFSVAILQRID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 143          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1063856678|ref|XP_017992683.1| (dead-domain-containing protein [Malassezia pachydermatis] >gi|924816918|gb|KOS15051.1| dead-domain-containing protein [Malassezia pachydermatis])

HSP 1 Score: 67.781 bits (164), Expect = 6.682e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P  +A+QA+VL P R+LA+Q+   + +LG Y+     IQC  C+G  N + + AR
Sbjct:   70 VIAQAQSGTGKTATFSVAILERID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 144          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1129839995|emb|SHO78084.1| (Translation initiation factor eIF4A [Malassezia sympodialis ATCC 42132])

HSP 1 Score: 67.781 bits (164), Expect = 6.939e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P  +A+QA+VL P R+LA+Q+   + +LG Y+     IQC  C+G  N + + AR
Sbjct:   69 VIAQAQSGTGKTATFSIAILQRID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 143          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1092930562|ref|XP_018741540.1| (uncharacterized protein MSY001_3044 [Malassezia sympodialis ATCC 42132] >gi|465795907|emb|CCV00339.1| unnamed protein product [Malassezia sympodialis ATCC 42132])

HSP 1 Score: 67.781 bits (164), Expect = 7.412e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P  +A+QA+VL P R+LA+Q+   + +LG Y+     IQC  C+G  N + + AR
Sbjct:   74 VIAQAQSGTGKTATFSIAILQRID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 148          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1023180612|ref|XP_016293279.1| (ATP-dependent RNA helicase eIF4A [Kalmanozyma brasiliensis GHG001] >gi|557998841|gb|EST08290.1| ATP-dependent RNA helicase eIF4A [Kalmanozyma brasiliensis GHG001])

HSP 1 Score: 67.0106 bits (162), Expect = 1.594e-10
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P+ +A+QA++L P R+LA+Q+   + +LG Y    ++I C  C+G  N + + A+
Sbjct:   77 VIAQAQSGTGKTATFSIAILQRID---PSIQAVQALILAPTRELAQQIQKVVIALGDY----MKINCHACIGGTNVREDMAK 151          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1003331523|emb|CDU22532.1| (probable TIF2-translation initiation factor eIF4A [Sporisorium scitamineum])

HSP 1 Score: 66.2402 bits (160), Expect = 2.496e-10
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P+ +A+QA++L P R+LA+Q+   + +LG Y    ++I C  C+G  N + + A+
Sbjct:   77 VIAQAQSGTGKTATFSIAILQRID---PSIKAVQALILAPTRELAQQIQKVVIALGDY----MKIDCHACIGGTNVREDMAK 151          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|343426357|emb|CBQ69887.1| (probable TIF2-translation initiation factor eIF4A [Sporisorium reilianum SRZ2])

HSP 1 Score: 66.2402 bits (160), Expect = 2.496e-10
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P+ +A+QA++L P R+LA+Q+   + +LG Y    ++I C  C+G  N + + A+
Sbjct:   77 VIAQAQSGTGKTATFSIAILQRID---PSIKAVQALILAPTRELAQQIQKVVIALGDY----MKIDCHACIGGTNVREDMAK 151          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1098869714|emb|SAM85945.1| (probable TIF2-translation initiation factor eIF4A [Ustilago bromivora])

HSP 1 Score: 66.2402 bits (160), Expect = 2.499e-10
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P+ +A+QA++L P R+LA+Q+   + +LG Y    ++I C  C+G  N + + A+
Sbjct:   70 VIAQAQSGTGKTATFSIAILQRID---PSIQAVQALILAPTRELAQQIQKVVIALGDY----MKINCHACIGGTNVREDMAK 144          
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|858057804|emb|CDW97019.1| (hypothetical protein [Sporisorium scitamineum])

HSP 1 Score: 66.2402 bits (160), Expect = 2.534e-10
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
            ++ QAQSG GKTA F+ AIL  ID   P+ +A+QA++L P R+LA+Q+   + +LG Y    ++I C  C+G  N + + A+
Sbjct:   92 VIAQAQSGTGKTATFSIAILQRID---PSIKAVQALILAPTRELAQQIQKVVIALGDY----MKIDCHACIGGTNVREDMAK 166          
The following BLAST results are available for this feature:
BLAST of EWM21727.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102051|gb|EWM21727.1|1.569e-82100.00eukaryotic initiation factor 4a, partial [Nannochl... [more]
gi|164657394|ref|XP_001729823.1|4.831e-1145.12hypothetical protein MGL_2809 [Malassezia globosa ... [more]
gi|1063856678|ref|XP_017992683.1|6.682e-1145.12dead-domain-containing protein [Malassezia pachyde... [more]
gi|1129839995|emb|SHO78084.1|6.939e-1145.12Translation initiation factor eIF4A [Malassezia sy... [more]
gi|1092930562|ref|XP_018741540.1|7.412e-1145.12uncharacterized protein MSY001_3044 [Malassezia sy... [more]
gi|1023180612|ref|XP_016293279.1|1.594e-1041.46ATP-dependent RNA helicase eIF4A [Kalmanozyma bras... [more]
gi|1003331523|emb|CDU22532.1|2.496e-1041.46probable TIF2-translation initiation factor eIF4A ... [more]
gi|343426357|emb|CBQ69887.1|2.496e-1041.46probable TIF2-translation initiation factor eIF4A ... [more]
gi|1098869714|emb|SAM85945.1|2.499e-1041.46probable TIF2-translation initiation factor eIF4A ... [more]
gi|858057804|emb|CDW97019.1|2.534e-1041.46hypothetical protein [Sporisorium scitamineum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8976rna8976Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications