EWM21727.1, cds8946 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|585102051|gb|EWM21727.1| (eukaryotic initiation factor 4a, partial [Nannochloropsis gaditana]) HSP 1 Score: 246.128 bits (627), Expect = 1.569e-82 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGGDHGEDCRPGGGREGGREGGREG 122
MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGGDHGEDCRPGGGREGGREGGREG
Sbjct: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGGDHGEDCRPGGGREGGREGGREG 122
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|164657394|ref|XP_001729823.1| (hypothetical protein MGL_2809 [Malassezia globosa CBS 7966] >gi|159103717|gb|EDP42609.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]) HSP 1 Score: 68.1662 bits (165), Expect = 4.831e-11 Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P +A+QA+VL P R+LA+Q+ + +LG Y+ IQC C+G N + + AR
Sbjct: 69 VIAQAQSGTGKTATFSVAILQRID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 143
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1063856678|ref|XP_017992683.1| (dead-domain-containing protein [Malassezia pachydermatis] >gi|924816918|gb|KOS15051.1| dead-domain-containing protein [Malassezia pachydermatis]) HSP 1 Score: 67.781 bits (164), Expect = 6.682e-11 Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P +A+QA+VL P R+LA+Q+ + +LG Y+ IQC C+G N + + AR
Sbjct: 70 VIAQAQSGTGKTATFSVAILERID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 144
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1129839995|emb|SHO78084.1| (Translation initiation factor eIF4A [Malassezia sympodialis ATCC 42132]) HSP 1 Score: 67.781 bits (164), Expect = 6.939e-11 Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P +A+QA+VL P R+LA+Q+ + +LG Y+ IQC C+G N + + AR
Sbjct: 69 VIAQAQSGTGKTATFSIAILQRID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 143
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1092930562|ref|XP_018741540.1| (uncharacterized protein MSY001_3044 [Malassezia sympodialis ATCC 42132] >gi|465795907|emb|CCV00339.1| unnamed protein product [Malassezia sympodialis ATCC 42132]) HSP 1 Score: 67.781 bits (164), Expect = 7.412e-11 Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P +A+QA+VL P R+LA+Q+ + +LG Y+ IQC C+G N + + AR
Sbjct: 74 VIAQAQSGTGKTATFSIAILQRID---PNLKAVQALVLAPTRELAQQIQNVVVALGDYMN----IQCHACIGGTNVREDMAR 148
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1023180612|ref|XP_016293279.1| (ATP-dependent RNA helicase eIF4A [Kalmanozyma brasiliensis GHG001] >gi|557998841|gb|EST08290.1| ATP-dependent RNA helicase eIF4A [Kalmanozyma brasiliensis GHG001]) HSP 1 Score: 67.0106 bits (162), Expect = 1.594e-10 Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P+ +A+QA++L P R+LA+Q+ + +LG Y ++I C C+G N + + A+
Sbjct: 77 VIAQAQSGTGKTATFSIAILQRID---PSIQAVQALILAPTRELAQQIQKVVIALGDY----MKINCHACIGGTNVREDMAK 151
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1003331523|emb|CDU22532.1| (probable TIF2-translation initiation factor eIF4A [Sporisorium scitamineum]) HSP 1 Score: 66.2402 bits (160), Expect = 2.496e-10 Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P+ +A+QA++L P R+LA+Q+ + +LG Y ++I C C+G N + + A+
Sbjct: 77 VIAQAQSGTGKTATFSIAILQRID---PSIKAVQALILAPTRELAQQIQKVVIALGDY----MKIDCHACIGGTNVREDMAK 151
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|343426357|emb|CBQ69887.1| (probable TIF2-translation initiation factor eIF4A [Sporisorium reilianum SRZ2]) HSP 1 Score: 66.2402 bits (160), Expect = 2.496e-10 Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P+ +A+QA++L P R+LA+Q+ + +LG Y ++I C C+G N + + A+
Sbjct: 77 VIAQAQSGTGKTATFSIAILQRID---PSIKAVQALILAPTRELAQQIQKVVIALGDY----MKIDCHACIGGTNVREDMAK 151
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|1098869714|emb|SAM85945.1| (probable TIF2-translation initiation factor eIF4A [Ustilago bromivora]) HSP 1 Score: 66.2402 bits (160), Expect = 2.499e-10 Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P+ +A+QA++L P R+LA+Q+ + +LG Y ++I C C+G N + + A+
Sbjct: 70 VIAQAQSGTGKTATFSIAILQRID---PSIQAVQALILAPTRELAQQIQKVVIALGDY----MKINCHACIGGTNVREDMAK 144
BLAST of EWM21727.1 vs. NCBI_GenBank
Match: gi|858057804|emb|CDW97019.1| (hypothetical protein [Sporisorium scitamineum]) HSP 1 Score: 66.2402 bits (160), Expect = 2.534e-10 Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQC--CVGSPNTKTEEAR 80
++ QAQSG GKTA F+ AIL ID P+ +A+QA++L P R+LA+Q+ + +LG Y ++I C C+G N + + A+
Sbjct: 92 VIAQAQSGTGKTATFSIAILQRID---PSIKAVQALILAPTRELAQQIQKVVIALGDY----MKIDCHACIGGTNVREDMAK 166 The following BLAST results are available for this feature:
BLAST of EWM21727.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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