rna8975, rna8975 (mRNA) Nannochloropsis gaditana

Overview
Namerna8975
Unique Namerna8975
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1065
Alignment locationKK037250.1:615953..616908 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100505g1.3089.mrna
Orig protein idgnl|cribi|Naga_100505g1.3089
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:615953..616908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100505g1gene8700Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8975rna8975-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21729.1cds8945Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8975 ID=rna8975|Name=rna8975|organism=Nannochloropsis gaditana|type=mRNA|length=1065bp
ATGGGGCAGCATGTGTACACTGCAACAGCCGTACCAGCCAACCCAATACA
GACCTGCTTATTGACCGCAAAATCTAGAACGCAGCGAAGCAGTGCATCCA
TCCTCTCCTTTTCTTCCTATCTCGCTGCTTTGCTCCTCTTGGTTTTGGTA
ATTGTTCTACCAAGCAACCCAACAAACGCCGCCCACGCGCCTCCCTCCGC
CCCCGTGGCGACCGCCCGTACGCGCCCTTCGTTCTTCTCACGGGGTCGCA
CTAGCAGCGTACAAGAGGCACCCTTGAGCACAAACCAGCCGAAAGCTTTC
TCAAACGTTCAAGATGACGACAGATGGGACACGGGCCGCTTTTTGCGGGC
GGTCGTGGACGCGCAAGTGGCGCAAGTCTCCGAGGAGGTGAACCGGGTGC
GTGCCTTTATCACCCTCCCACCCGGGATTGTGAACACCAGCCGGAACCCC
GAGGAGGTGGCCGAGCAAGTAGGCAAGTTGGTGGTGGATGTGGGCATGGG
ATATTTGCAGAGTGCGGCCTTGGGGTATGCCTTTGGGTACGGGGGCGCCG
TGATGGCCGACGATATGACCAAGAGACTAGGGGCACGGTTTTGCGGCAAA
ACATTTGCACATAAACGTGGAATCAAACAAGCCAAGCAATTTGGCGAATT
CTGCGCCGCCTTCACGGCCTTTGAAGGGATCTTGCACGTCGGGCGAGGGA
TCAGCGACAAATGGAACGGCATTTTGGGGTCGACGGCGGTGGGCATGTAC
ACGACGCGGAACAGGGCTTTATCCGCCCAGCTGAAAAACGGCCTGACGTT
TGGGGGCTTCAATTACGTGCTTTCGGGGAAAGCCACATGCATCGTTCTTT
CGGGACCTTGGCTGCCGGCGTCGTTTTGGTCGGCCTGGATGTTGTGCGTG
GGCGGTTGTTGCACCGAGGACGTGATGGCTTTCGCTCATATGATACATGA
TCCAAAAGCAATGTCTCGTGTGGACTCCCGCCCCAAGCGGTCCTCCCACC
TTGCCGGGGGCAGGAATCTCAGGACCAATGGTAGCATGGGCACGGTGACG
AAGAACCGTGATTGA
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protein sequence of rna8975

>rna8975-protein ID=rna8975-protein|Name=rna8975|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MCGSGTDRGKKVIQAAQALSHTMADSWDEENKDKETTRSAPQKSWADDDD
DFTPVRPTVQKEVTYPAPQRTAVGPSRDGGFGGATAASRDFSDGRGARGE
GDFSNFGSRRGSGRGGGREGGYRGSWGPARGPGGRRGAPAG
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mRNA from alignment at KK037250.1:615953..616908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8975 ID=rna8975|Name=rna8975|organism=Nannochloropsis gaditana|type=mRNA|length=956bp|location=Sequence derived from alignment at KK037250.1:615953..616908+ (Nannochloropsis gaditana)
ATGTGTGGTTCTGGTGCGTTGAGGATACTGGGGCGAGCACGTCGGCGCCT
cgacgggaaagagggcaaaCATGGATTGAACGAGTCTTGACGCACAAGGA
TGGCGGCTGCATGTGATATGAGTACATTTCTTTGGTTTGTGCATCTCTCT
GTAGACATTGCATTCGTGCTTGTAGTACGCTGAGTTTTTAattgaaggag
aaggcgtgCGCCTGGCGCTTCATTCCCCGTCTGTGTTCGTTCGCCCTGTT
GCCCCTATGCTGCCCTCATTCATATGCATATGTGCACGGTGGACGCGTAT
TAAATGAGACCGACCGCTGGAAGCATTGTTTAACATATTTTCGATAGCCC
CTAGACCATGCTCATTTGTGTCCCTTTACAGGTACAGACAGGGGCAAGAA
AGTAATCCAAGCAGCACAAGCCCTCTCGCACACCATGGCGGACAGCTGGG
ATGAAGAAAACAAAGACAAGGTACGTACCCAAGGGATTCGCATTCTACAC
CTTTGTGAATATCCTGCTTTCGTCCTTCGATATTTTGCCGTTTAGTAAAC
GAGACAGCTTCAATGTCTTTTCtccgtccccaccccctccattaccttcc
cccttcctgcctcgccctcctccccttcccaggAGACAACACGCAGCGCG
CCTCAGAAGTCGTGGGCGGACGACGATGATGACTTTACGCCAGTGCGGCC
TACTGTGCAAAAGGAAGTGACCTACCCTGCCCCACAGCGCACAGCGGTGG
GGCCATCGCGGGATGGGGGATTTGGCGGCGCCACTGCGGCCTCCCGGGAC
TTCAGTGACGGACGAGGTGcccgtggagagggagattTCTCCAATTTCGG
GTCCCGTCGTGGCtcaggacggggagggggcagggaggggggttaCAGGG
GGTCGTGGGGGCCGgcgcgggggccgggggggaggaggggtgcgcCAGCA
GGTTGA
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Coding sequence (CDS) from alignment at KK037250.1:615953..616908+

>rna8975 ID=rna8975|Name=rna8975|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at KK037250.1:615953..616908+ (Nannochloropsis gaditana)
ATGTGTGGTTCTGGTACAGACAGGGGCAAGAAAGTAATCCAAGCAGCACA
AGCCCTCTCGCACACCATGGCGGACAGCTGGGATGAAGAAAACAAAGACA
AGgAGACAACACGCAGCGCGCCTCAGAAGTCGTGGGCGGACGACGATGAT
GACTTTACGCCAGTGCGGCCTACTGTGCAAAAGGAAGTGACCTACCCTGC
CCCACAGCGCACAGCGGTGGGGCCATCGCGGGATGGGGGATTTGGCGGCG
CCACTGCGGCCTCCCGGGACTTCAGTGACGGACGAGGTGcccgtggagag
ggagattTCTCCAATTTCGGGTCCCGTCGTGGCtcaggacggggaggggg
cagggaggggggttaCAGGGGGTCGTGGGGGCCGgcgcgggggccggggg
ggaggaggggtgcgcCAGCAGGTTGAATGTGTGGTTCTGGTACAGACAGG
GGCAAGAAAGTAATCCAAGCAGCACAAGCCCTCTCGCACACCATGGCGGA
CAGCTGGGATGAAGAAAACAAAGACAAGgAGACAACACGCAGCGCGCCTC
AGAAGTCGTGGGCGGACGACGATGATGACTTTACGCCAGTGCGGCCTACT
GTGCAAAAGGAAGTGACCTACCCTGCCCCACAGCGCACAGCGGTGGGGCC
ATCGCGGGATGGGGGATTTGGCGGCGCCACTGCGGCCTCCCGGGACTTCA
GTGACGGACGAGGTGcccgtggagagggagattTCTCCAATTTCGGGTCC
CGTCGTGGCtcaggacggggagggggcagggaggggggttaCAGGGGGTC
GTGGGGGCCGgcgcgggggccgggggggaggaggggtgcgcCAGCAGGTT
GAATGTGTGGTTCTGGTACAGACAGGGGCAAGAAAGTAATCCAAGCAGCA
CAAGCCCTCTCGCACACCATGGCGGACAGCTGGGATGAAGAAAACAAAGA
CAAGgAGACAACACGCAGCGCGCCTCAGAAGTCGTGGGCGGACGACGATG
ATGACTTTACGCCAGTGCGGCCTACTGTGCAAAAGGAAGTGACCTACCCT
GCCCCACAGCGCACAGCGGTGGGGCCATCGCGGGATGGGGGATTTGGCGG
CGCCACTGCGGCCTCCCGGGACTTCAGTGACGGACGAGGTGcccgtggag
agggagattTCTCCAATTTCGGGTCCCGTCGTGGCtcaggacggggaggg
ggcagggaggggggttaCAGGGGGTCGTGGGGGCCGgcgcgggggccggg
ggggaggaggggtgcgcCAGCAGGTTGA
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Synonyms
Publications