rna8974, rna8974 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8974
Unique Name	rna8974
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2037
Alignment location	KK037250.1:614233..615609 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100505g2.3091.mrna
Orig protein id	gnl\|cribi\|Naga_100505g2.3091
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:614233..615609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100505g2	gene8699	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8974	rna8974-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21731.1	cds8944	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:614233..615609-
coding sequence from alignment at KK037250.1:614233..615609-

mRNA sequence

>rna8974 ID=rna8974|Name=rna8974|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp
ATGCAGCAGCACTTGGCAACAACAACATTATTGGTTGCCTGTCTGACTTC
TACCAGCACAGCGTTTCATCCTCCTCCCATATCAATTTCTCCCTCGTCGT
CCATTCCTTCGCGCTCCTTATACCCAGCATCCGGAAGTGATAAGAACCTA
GGCTTTCCCTCATCGCTCCATCGATCATCACCATCATATGCTGCCCTCTC
GTTTGCCAGCAATCAAGACCCAAGAAGACAGTACTCGCGCCGTCCATCAC
GGAAAGATGACAATTCACAGCAAGAGCGTCCTATACAAGGCGCCTTGCCA
CAAGTTGAGGAAAGAATGTCCTCCCTTTCCCCTTTGGCCCGCACTGTTTT
GCGCGCTTTACCTACAGTCCTTGTCGTTGTCTCCTTCCTAGTGACCTGTG
GGCCCGCCGTCGCGCACGCCGCAGCATCGTCCTCTCTTCCTACGTCCGTC
ACACCTACACGCGTTAATAAGGTCAAGGAATACATCCTCAAGCCTATAGG
CCGGTGGGTCGGGGGAATAGGCAATGCCCCGCCGCTTAAAATGGTCCGCG
ATACCTCCCTGTCCCTTTGTTCCTGGACGACGCACGGTCCCGTGGGGCAA
TCCTTGGCGAAAGCCTGGAATGAGCCCGTGGCCAGGTACATGCTCGACCC
CACTGCGCCCGTTGGTCCGTACAACTTGCCGGGCCGTGTGCTGGAGGCCA
TCCAAGCGCGCATCCCGCCCTCCTGGTCCCCTCTCGGGGTCGTCGCCCTC
CTCTCCTTCCTCCCCATCTTCGAAGCCCGGGTCGGCGTGCCCTTCGGCTT
GGCCCTGGGTGCCCCCTGGTTGAAGGCCTTGGTCGTGGGACTGACCGCGA
ACGCGGTGGCGATTCCCGTGGCGGCGGGGGTAGGCTTGTTCTGTAAAAAC
GTGGAGGGGGTGAGTCCGGTCCTGGAAACCGCCACTGCCGCCCGCGCCCG
GTACCAGACCTTCGAACGGGCCTACCAGGAGTTACAAGGGAAGTTGAGCG
TGAAGACAAGCCTGCTGGAGGAGGAGGAAACGGGCCTGCGGACGACCATC
GACCGCGCCATTGATGTGGTCCGGAAGGGGCAGGTCCTGATGGACAAGGC
CACGCGGCAAGGACTGGTTCGAGAGATCACGGAGGCCTCCCGTCTGCTGC
TCCAATTGAACGACGCGGACACCCGACAATTTTACGCGCGCCTGGAGGAG
CAATTTTTCGACACTAGCGTCGGCAGCGTCCTGCCCGACAACAAGGACGG
TGCCTTCGCCGACGTAACCGTGGCCGAGCTGGGCCAGAGGCGGGTGGAAC
TGGCATGGTACCCGGATGTAACCCTGTTCCCGATGCTGGGGCAGGCCGTG
GTCACATACCAGTTGGAGGAGATTGCCGCTCAAGCCCAGGCGGACTTTTG
TGTCCGGCCCCGGGAGCTTCTGCTCTTGCGGGAGGAAGTGGCAAGCCTGA
AGCAGGAGGTGGAGAGGGAAGGAGGACGGTTGAAAGCAGCGGCAAAGAAA
GCGGCGGAGGCGGGGAAGGAAACGGTCAGTTTGGCGCGGGAATTGGAGTC
GGGGGTACTGACGCCCGAAGAGAAAACGGAAGCGCGTAAACGGGCCATGG
CGGAGGCGAAGGAAGCCACCACGTCTGAGACAGGTCCGGGTAGCTTTGTG
CCGATTGCCGAACGGGAAAAGGAAGAAGATGCCCGGGTGGCGGAGCTGCA
GATGCGGGGGACCTTGATGAAGAACTACGGATGGCCGAAAGCCATTGTCT
ACGTGGGCGTGCCCCTCCCCTTGTCAGGGGCTTGGACCGCCATGTTCTGG
TCCACCTGCTTGGGGATGAAATATGGGCCGTCGGCCCGGGGGACCTTGGT
GGGCGTGGGGCTCTCCACGCTCATTGGCTTGACCTTGTGGTTGGCGGGAC
CCACAGGCGTGTTGGTGTATGCGCTCGTCCTAGCGCTCATGTACGGGGAG
GAAAATCCGTGGACGGTCCTTGGCCGGGGGCTTGTGACTGTGAAGGAGGG
TTTGATGGGCTTACTGGGGGGAAGGGGCAAAAGGTAG

protein sequence of rna8974

>rna8974-protein ID=rna8974-protein|Name=rna8974|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MGQHVYTATAVPANPIQTCLLTAKSRTQRSSASILSFSSYLAALLLLVLV
IVLPSNPTNAAHAPPSAPVATARTRPSFFSRGRTSSVQEAPLSTNQPKAF
SNVQDDDRWDTGRFLRAVVDAQVAQVSEEVNRVRAFITLPPGIVNTSRNP
EEVAEQVGKLVVDVGMGYLQSAALGYAFGYGGAVMADDMTKRLGARFCGK
TFAHKRGIKQAKQFGEFCAAFTAFEGILHVGRGISDKWNGILGSTAVGMY
TTRNRALSAQLKNGLTFGGFNYVLSGKATCIVLSGPWLPASFWSAWMLCV
GGCCTEDVMAFAHMIHDPKAMSRVDSRPKRSSHLAGGRNLRTNGSMGTVT
KNRD

mRNA from alignment at KK037250.1:614233..615609-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8974 ID=rna8974|Name=rna8974|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp|location=Sequence derived from alignment at KK037250.1:614233..615609- (Nannochloropsis gaditana)
ATGGGGCAGCATGTGTACACTGCAACAGCCGTACCAGCCAACCCAATACA
GACCTGCTTATTGACCGCAAAATCTAGAACGCAGCGAAGCAGTGCATCCA
TCCTCTCCTTTTCTTCCTATCTCGCTGCTTTGCTCCTCTTGGTTTTGGTA
ATTGTTCTACCAAGCAACCCAACAAACGCCGCCCACGCGCCTCCCTCCGC
CCCCGTGGCGACCGCCCGTACGCGCCCTTCGTTCTTCTCACGGGGTCGCA
CTAGCAGCGTACAAGAGGCACCCTTGAGCACAAACCAGCCGAAAGCTTTC
TCAAACGTTCAAGATGACGACAGATGGGACACGGGCCGCTTTTTGCGGGC
GGTCGTGGACGCGCAAGTGGCGCAAGTCTCCGAGGAGGTGAACCGGGTGC
GTGCCTTTATCACCCTCCCACCCGGGATTGTGAACACCAGCCGGAACCCC
GAGGAGGTGGCCGAGCAAGTAGGCAAGTTGGTGGTGGATGTGGGCATGGG
ATATTTGCAGAGTGCGGCCTTGGGGTATGCCTTTGGGTACGGGGGCGCCG
TGATGGCCGACGATATGACCAAGAGACTAGGGGCACGGTTTTGCGGCAAA
ACATTTGCACATAAACGTGGAATCAAACAAGCCAAGCAATTTGGCGAATT
CTGCGCCGCCTTCACGGCCTTTGAAGGGATCTTGCACGTCGGGCGAGGGA
TCAGCGACAAATGGAACGGCATTTTGGGGTCGACGGCGGTGGGCATGTAC
ACGACGCGGAACAGGGCTTTATCCGCCCAGCTGAAAAACGGCCTGACGTT
TGGGGGCTTCAATTACGTGCTTTCGGGGTTTGCGGGGGGGAAGCAGCAGG
CAGAGGGGGGAGGCACTGGGGCGGGTTCTAAGGGCGCAGGGCGCGACCGG
CCGACCTGGCAAGGGAGGAAAGGCCCGGGCGGGCGGAGGGAGACGGAGGG
GAAGGAGAAAGTGGGGATGAGAAAGTAGGAGGCAGGGGGAAGGGGCAGAC
GAGCATAAGGCGTGCAGGACCACATTGTGTGTAGAGGATATGAAACCGGA
TGGGTAGGGAGCGGAGGGGATTGTACAGAGTGTGCTAGGGGTGGAGGGGT
CGCCCGGGGGGGGGCAAGACGCAGAGGAAGTATGTGAAGGAAAGCCACAT
GCATCGTTCTTTCGGGACCTTGGCTGCCGGCGTCGTTTTGGTCGGCCTGG
ATGTTGTGCGTGGGCGGTTGTTGCACCGAGGACGTGATGGCTTTCGCTCA
TATGATACATGATCCAAAAGCAATGTCTCGTGTGGACTCCCGCCCCAAGC
GGTCCTCCCACCTTGCCGGGGGCAGGAATCTCAGGACCAATGGTAGCATG
GGCACGGTGACGAAGAACCGTGATTGA

Coding sequence (CDS) from alignment at KK037250.1:614233..615609-

>rna8974 ID=rna8974|Name=rna8974|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at KK037250.1:614233..615609- (Nannochloropsis gaditana)
GAAAGCCACATGCATCGTTCTTTCGGGACCTTGGCTGCCGGCGTCGTTTT
GGTCGGCCTGGATGTTGTGCGTGGGCGGTTGTTGCACCGAGGACGTGATG
GCTTTCGCTCATATGATACATGATCCAAAAGCAATGTCTCGTGTGGACTC
CCGCCCCAAGCGGTCCTCCCACCTTGCCGGGGGCAGGAATCTCAGGACCA
ATGGTAGCATGGGCACGGTGACGAAGAACCGTGATTGAATGGGGCAGCAT
GTGTACACTGCAACAGCCGTACCAGCCAACCCAATACAGACCTGCTTATT
GACCGCAAAATCTAGAACGCAGCGAAGCAGTGCATCCATCCTCTCCTTTT
CTTCCTATCTCGCTGCTTTGCTCCTCTTGGTTTTGGTAATTGTTCTACCA
AGCAACCCAACAAACGCCGCCCACGCGCCTCCCTCCGCCCCCGTGGCGAC
CGCCCGTACGCGCCCTTCGTTCTTCTCACGGGGTCGCACTAGCAGCGTAC
AAGAGGCACCCTTGAGCACAAACCAGCCGAAAGCTTTCTCAAACGTTCAA
GATGACGACAGATGGGACACGGGCCGCTTTTTGCGGGCGGTCGTGGACGC
GCAAGTGGCGCAAGTCTCCGAGGAGGTGAACCGGGTGCGTGCCTTTATCA
CCCTCCCACCCGGGATTGTGAACACCAGCCGGAACCCCGAGGAGGTGGCC
GAGCAAGTAGGCAAGTTGGTGGTGGATGTGGGCATGGGATATTTGCAGAG
TGCGGCCTTGGGGTATGCCTTTGGGTACGGGGGCGCCGTGATGGCCGACG
ATATGACCAAGAGACTAGGGGCACGGTTTTGCGGCAAAACATTTGCACAT
AAACGTGGAATCAAACAAGCCAAGCAATTTGGCGAATTCTGCGCCGCCTT
CACGGCCTTTGAAGGGATCTTGCACGTCGGGCGAGGGATCAGCGACAAAT
GGAACGGCATTTTGGGGTCGACGGCGGTGGGCATGTACACGACGCGGAAC
AGGGCTTTATCCGCCCAGCTGAAAAACGGCCTGACGTTTGGGGGCTTCAA
TTACGTGCTTTCGGGGAAAGCCACATGCATCGTTCTTTCGGGACCTTGGC
TGCCGGCGTCGTTTTGGTCGGCCTGGATGTTGTGCGTGGGCGGTTGTTGC
ACCGAGGACGTGATGGCTTTCGCTCATATGATACATGATCCAAAAGCAAT
GTCTCGTGTGGACTCCCGCCCCAAGCGGTCCTCCCACCTTGCCGGGGGCA
GGAATCTCAGGACCAATGGTAGCATGGGCACGGTGACGAAGAACCGTGAT
TGAATGGGGCAGCATGTGTACACTGCAACAGCCGTACCAGCCAACCCAAT
ACAGACCTGCTTATTGACCGCAAAATCTAGAACGCAGCGAAGCAGTGCAT
CCATCCTCTCCTTTTCTTCCTATCTCGCTGCTTTGCTCCTCTTGGTTTTG
GTAATTGTTCTACCAAGCAACCCAACAAACGCCGCCCACGCGCCTCCCTC
CGCCCCCGTGGCGACCGCCCGTACGCGCCCTTCGTTCTTCTCACGGGGTC
GCACTAGCAGCGTACAAGAGGCACCCTTGAGCACAAACCAGCCGAAAGCT
TTCTCAAACGTTCAAGATGACGACAGATGGGACACGGGCCGCTTTTTGCG
GGCGGTCGTGGACGCGCAAGTGGCGCAAGTCTCCGAGGAGGTGAACCGGG
TGCGTGCCTTTATCACCCTCCCACCCGGGATTGTGAACACCAGCCGGAAC
CCCGAGGAGGTGGCCGAGCAAGTAGGCAAGTTGGTGGTGGATGTGGGCAT
GGGATATTTGCAGAGTGCGGCCTTGGGGTATGCCTTTGGGTACGGGGGCG
CCGTGATGGCCGACGATATGACCAAGAGACTAGGGGCACGGTTTTGCGGC
AAAACATTTGCACATAAACGTGGAATCAAACAAGCCAAGCAATTTGGCGA
ATTCTGCGCCGCCTTCACGGCCTTTGAAGGGATCTTGCACGTCGGGCGAG
GGATCAGCGACAAATGGAACGGCATTTTGGGGTCGACGGCGGTGGGCATG
TACACGACGCGGAACAGGGCTTTATCCGCCCAGCTGAAAAACGGCCTGAC
GTTTGGGGGCTTCAATTACGTGCTTTCGGG

Synonyms

Publications