rna8973, rna8973 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8973
Unique Name	rna8973
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	714
Alignment location	KK037250.1:611886..613922 +

Link to JBrowse

Properties


Property Name	Value
Product	Putative small multi-drug export
Orig transcript id	gnl\|cribi\|Naga_100505g3.3090.mrna
Orig protein id	gnl\|cribi\|Naga_100505g3.3090
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:611886..613922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100505g3	gene8698	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8973	rna8973-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21730.1	cds8943	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:611886..613922+
coding sequence from alignment at KK037250.1:611886..613922+

mRNA sequence

>rna8973 ID=rna8973|Name=rna8973|organism=Nannochloropsis gaditana|type=mRNA|length=714bp
ATGGAGGGAGGGCAGGGGATTTGTGCGACGCCAGAGGGTTATTGTCACAA
GGCGAAGCGCTTTTCATTTTTAGCAAAGTTTCCTCCACAATTTGAAATCG
TAGGGCATTTGGGGAGCTTGAATGAAAAAGAATGCACGTGGGAAAAAAAA
ACACGGTCAACATCAGCCCTTCCTCGGATGCCTGCCTTACGCCAAGCGTA
CGCGCTTTTCAAGACAGCGCACCGTTCTTCCTCCCGAATTAATACGCTGC
ACAGTAAGATTGGCTTCTGCAGACGCACTCTCTCCTCCGCCGCTCATGTC
CTCCTTGTCGGACGGCTTTGTCTATTCTCGTCCTCCCTTGCCTGTAGGGC
CTCTGTGCCCTCTCTTGGCATAGCCTTTCCCAGGCTTCCTCGTCCCTCTC
CTTTTCTGTCTCCCGGCGCCTCCCTGCAAAGTGTATTCTACTCTAAGCTA
TGTCCGTCCTCTCCACCCTGTCCCCTGTCGAGCAAGCAGCTGAGGCCTTC
GGCACAGCGTTCTCGCGGTTCCAGCGCGCTCCCTCCCTCCATGACCTCGT
TGCCGGCCTCACTGACGAGGAAGAGTGGAGGTACGGTACTTCCACAGAGA
GGAGTGACCATGACGAGTGACAGCACAGGAGAGGCTGGGAAGCAGGGGCT
GTCACCCCCAAAGCGTCCGGGACAGCGACTGTCCGGTGCTTATTTTTGCC
CAGGAAATGACTAG

protein sequence of rna8973

>rna8973-protein ID=rna8973-protein|Name=rna8973|organism=Nannochloropsis gaditana|type=polypeptide|length=678bp
MQQHLATTTLLVACLTSTSTAFHPPPISISPSSSIPSRSLYPASGSDKNL
GFPSSLHRSSPSYAALSFASNQDPRRQYSRRPSRKDDNSQQERPIQGALP
QVEERMSSLSPLARTVLRALPTVLVVVSFLVTCGPAVAHAAASSSLPTSV
TPTRVNKVKEYILKPIGRWVGGIGNAPPLKMVRDTSLSLCSWTTHGPVGQ
SLAKAWNEPVARYMLDPTAPVGPYNLPGRVLEAIQARIPPSWSPLGVVAL
LSFLPIFEARVGVPFGLALGAPWLKALVVGLTANAVAIPVAAGVGLFCKN
VEGVSPVLETATAARARYQTFERAYQELQGKLSVKTSLLEEEETGLRTTI
DRAIDVVRKGQVLMDKATRQGLVREITEASRLLLQLNDADTRQFYARLEE
QFFDTSVGSVLPDNKDGAFADVTVAELGQRRVELAWYPDVTLFPMLGQAV
VTYQLEEIAAQAQADFCVRPRELLLLREEVASLKQEVEREGGRLKAAAKK
AAEAGKETVSLARELESGVLTPEEKTEARKRAMAEAKEATTSETGPGSFV
PIAEREKEEDARVAELQMRGTLMKNYGWPKAIVYVGVPLPLSGAWTAMFW
STCLGMKYGPSARGTLVGVGLSTLIGLTLWLAGPTGVLVYALVLALMYGE
ENPWTVLGRGLVTVKEGLMGLLGGRGKR

mRNA from alignment at KK037250.1:611886..613922+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8973 ID=rna8973|Name=rna8973|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp|location=Sequence derived from alignment at KK037250.1:611886..613922+ (Nannochloropsis gaditana)
ATGCAGCAGCACTTGGCAACAACAACATTATTGGTTGCCTGTCTGACTTC
TACCAGCACAGCgtttcatcctcctcccatatcaatttctccctcgtcgt
ccatTCCTTCGCGCTCCTTATACCCAGCATCCGGAAGTGATAAGAACCTA
GGCTTTCCCTCATCGCTCCATCGATCATCACCATCATATGCTGCCCTCTC
GTTTGCCAGCAATCAAGACCCAAGAAGACAGTACTCGCGCCGTCCATCAC
GGAAAGATGACAATTCACAGCAAGAGCGTCCTATACAAGGCGCCTTGCCA
CAAGTTGAGGAAAGaatgtcctccctttcccctttggCCCGCACTGTTTT
GCGCGCTTTACCTACAGTCCTTGTCGTTGTCTCCTTCCTAGTGACCTGTG
GGCCCGCCGTCGCGCACGCCGCAGCATCGTCCTCTCTTCCTACGTCCGTC
ACACCTACACGCGTTAATAAGGTCAAGGAATACATCCTCAAGCCTATAGG
CCGGTGGGTCGGGGGAATAGGCAATGCCCCGCCGCTTAAAATGGTCCGCG
AtacctccctgtccctttgTTCCTGGACGACGCACGGTCCCGTGGGGCAA
TCCTTGGCGAAAGCCTGGAATGAGCCCGTGGCCAGGTACATGCTCGACCC
CACTGCGCCCGTTGGTCCGTACAACTTGCCGGGCCGTGTGCTGGAGGCCA
TCCAAGCGcgcatcccgccctcctggtccCCTCTCGgggtcgtcgccctc
ctctccttcctccccatcttcgAAGCCCGGGTCGGCGTGCCCTTCGGCTT
GGCCCTGGGTGCCCCCTGGTTGAAGGCCTTGGTCGTGGGACTGACCGCGA
ACGCGGTGGCGATtcccgtggcggcgggggtaGGCTTGTTCTGTAAAAac
gtggagggggtgagTCCGGTCCTGGAAACCGCCACTGCCGCCCGCGCCCG
GTACCAGACCTTCGAACGGGCCTACCAGGAGTTACAAGGGAAGTTGAGCG
TGAAGACAagcctgctggaggaggaggaaacgggccTGCGGACGACCATC
GACCGCGCCATTGATGTGGTCCGGAAGGGGCAGGTCCTGATGGACAAGGC
CACGCGGCAAGGACTGGTTCGAGAGATCACGGAGGCCTCCCGTCTGCTGC
TCCAATTGAACGACGCGGACACCCGACAATTTTACGCGCGCCTGGAGGAG
CAATTTTTCGACACTAGCGTCGGCAGCGTCCTGCCCGACAACAAGGACGG
TGCCTTCGCCGACGTAACCGTGGCCGAGCTGGGCCAGAGGCGGGTGGAAC
TGGCATGGTACCCGGATGTAACCCTGTTCCCGATGCTGGGGCAGGCCGTG
GTCACATACCAGTTGGAGGAGATTGCCGCTCAAGCCCAGGCGGACTTTTG
TGTCCGGCCCCGGGAGCTTCTGCTCttgcgggaggaagtggcaaGCCTga
agcaggaggtggagagggaaggaggacggttGAAAGCAGCGGCAAagaaa
gcggcggaggcggggaaggaaacggtcAGTTTGGCGCGGGAATTGGAGTC
GGGGGTACTGACGCCCGAAGAGAAAACGGAAGCGCGTAAACGGgccatgg
cggaggcgaaggaagccACCACGTCTGAGACAggtccgggtagctttgTG
CCGATTGCCgaacgggaaaaggaagaagatgccCGGGTGGCGGAGCTGCA
GATGCGGGGGACCTTGATGAAGAACTACGGATGGCCGAAAGCCATTGTCT
ACGTGggcgtgcccctccccttgtcaGGGGCTTGGACCGCCATGTTCTGG
TCCACCTGCTTGGGGATGAAATATGGGCCGTCGGCCCGGGGGACCttggt
gggcgtggggctCTCCACGCTCATTGGCTTGACCTTGTGGTTGGCGGGAC
CCACAGGCGTGTTGGTGTATGCGCTCGTCCTAGCGCTCATGTACGGGGAG
GAAAATCCGTGGACGGTCCTTGGCCGGGGGCTTGTGACTGTGAAGGAGGG
TTTGATGGGCTTactggggggaaggggcaaaaggtag

Coding sequence (CDS) from alignment at KK037250.1:611886..613922+

>rna8973 ID=rna8973|Name=rna8973|organism=Nannochloropsis gaditana|type=CDS|length=2037bp|location=Sequence derived from alignment at KK037250.1:611886..613922+ (Nannochloropsis gaditana)
ATGCAGCAGCACTTGGCAACAACAACATTATTGGTTGCCTGTCTGACTTC
TACCAGCACAGCgtttcatcctcctcccatatcaatttctccctcgtcgt
ccatTCCTTCGCGCTCCTTATACCCAGCATCCGGAAGTGATAAGAACCTA
GGCTTTCCCTCATCGCTCCATCGATCATCACCATCATATGCTGCCCTCTC
GTTTGCCAGCAATCAAGACCCAAGAAGACAGTACTCGCGCCGTCCATCAC
GGAAAGATGACAATTCACAGCAAGAGCGTCCTATACAAGGCGCCTTGCCA
CAAGTTGAGGAAAGaatgtcctccctttcccctttggCCCGCACTGTTTT
GCGCGCTTTACCTACAGTCCTTGTCGTTGTCTCCTTCCTAGTGACCTGTG
GGCCCGCCGTCGCGCACGCCGCAGCATCGTCCTCTCTTCCTACGTCCGTC
ACACCTACACGCGTTAATAAGGTCAAGGAATACATCCTCAAGCCTATAGG
CCGGTGGGTCGGGGGAATAGGCAATGCCCCGCCGCTTAAAATGGTCCGCG
AtacctccctgtccctttgTTCCTGGACGACGCACGGTCCCGTGGGGCAA
TCCTTGGCGAAAGCCTGGAATGAGCCCGTGGCCAGGTACATGCTCGACCC
CACTGCGCCCGTTGGTCCGTACAACTTGCCGGGCCGTGTGCTGGAGGCCA
TCCAAGCGcgcatcccgccctcctggtccCCTCTCGgggtcgtcgccctc
ctctccttcctccccatcttcgAAGCCCGGGTCGGCGTGCCCTTCGGCTT
GGCCCTGGGTGCCCCCTGGTTGAAGGCCTTGGTCGTGGGACTGACCGCGA
ACGCGGTGGCGATtcccgtggcggcgggggtaGGCTTGTTCTGTAAAAac
gtggagggggtgagTCCGGTCCTGGAAACCGCCACTGCCGCCCGCGCCCG
GTACCAGACCTTCGAACGGGCCTACCAGGAGTTACAAGGGAAGTTGAGCG
TGAAGACAagcctgctggaggaggaggaaacgggccTGCGGACGACCATC
GACCGCGCCATTGATGTGGTCCGGAAGGGGCAGGTCCTGATGGACAAGGC
CACGCGGCAAGGACTGGTTCGAGAGATCACGGAGGCCTCCCGTCTGCTGC
TCCAATTGAACGACGCGGACACCCGACAATTTTACGCGCGCCTGGAGGAG
CAATTTTTCGACACTAGCGTCGGCAGCGTCCTGCCCGACAACAAGGACGG
TGCCTTCGCCGACGTAACCGTGGCCGAGCTGGGCCAGAGGCGGGTGGAAC
TGGCATGGTACCCGGATGTAACCCTGTTCCCGATGCTGGGGCAGGCCGTG
GTCACATACCAGTTGGAGGAGATTGCCGCTCAAGCCCAGGCGGACTTTTG
TGTCCGGCCCCGGGAGCTTCTGCTCttgcgggaggaagtggcaaGCCTga
agcaggaggtggagagggaaggaggacggttGAAAGCAGCGGCAAagaaa
gcggcggaggcggggaaggaaacggtcAGTTTGGCGCGGGAATTGGAGTC
GGGGGTACTGACGCCCGAAGAGAAAACGGAAGCGCGTAAACGGgccatgg
cggaggcgaaggaagccACCACGTCTGAGACAggtccgggtagctttgTG
CCGATTGCCgaacgggaaaaggaagaagatgccCGGGTGGCGGAGCTGCA
GATGCGGGGGACCTTGATGAAGAACTACGGATGGCCGAAAGCCATTGTCT
ACGTGggcgtgcccctccccttgtcaGGGGCTTGGACCGCCATGTTCTGG
TCCACCTGCTTGGGGATGAAATATGGGCCGTCGGCCCGGGGGACCttggt
gggcgtggggctCTCCACGCTCATTGGCTTGACCTTGTGGTTGGCGGGAC
CCACAGGCGTGTTGGTGTATGCGCTCGTCCTAGCGCTCATGTACGGGGAG
GAAAATCCGTGGACGGTCCTTGGCCGGGGGCTTGTGACTGTGAAGGAGGG
TTTGATGGGCTTactggggggaaggggcaaaaggtag

Synonyms

Publications