EWM21730.1, cds8943 (CDS) Nannochloropsis gaditana

Overview
NameEWM21730.1
Unique Namecds8943
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:611886..613922 +

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Properties
Property NameValue
Protein idEWM21730.1
ProductPutative small multi-drug export
Orig transcript idgnl|cribi|Naga_100505g3.3090.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:611886..613922 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009577Sm_multidrug_ex
Homology
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BLAST of EWM21730.1 vs. NCBI_GenBank
Match: gi|585102055|gb|EWM21730.1| (Putative small multi-drug export [Nannochloropsis gaditana])

HSP 1 Score: 1363.59 bits (3528), Expect = 0.000e+0
Identity = 678/678 (100.00%), Postives = 678/678 (100.00%), Query Frame = 0 
Query:    1 MQQHLATTTLLVACLTSTSTAFHPPPISISPSSSIPSRSLYPASGSDKNLGFPSSLHRSSPSYAALSFASNQDPRRQYSRRPSRKDDNSQQERPIQGALPQVEERMSSLSPLARTVLRALPTVLVVVSFLVTCGPAVAHAAASSSLPTSVTPTRVNKVKEYILKPIGRWVGGIGNAPPLKMVRDTSLSLCSWTTHGPVGQSLAKAWNEPVARYMLDPTAPVGPYNLPGRVLEAIQARIPPSWSPLGVVALLSFLPIFEARVGVPFGLALGAPWLKALVVGLTANAVAIPVAAGVGLFCKNVEGVSPVLETATAARARYQTFERAYQELQGKLSVKTSLLEEEETGLRTTIDRAIDVVRKGQVLMDKATRQGLVREITEASRLLLQLNDADTRQFYARLEEQFFDTSVGSVLPDNKDGAFADVTVAELGQRRVELAWYPDVTLFPMLGQAVVTYQLEEIAAQAQADFCVRPRELLLLREEVASLKQEVEREGGRLKAAAKKAAEAGKETVSLARELESGVLTPEEKTEARKRAMAEAKEATTSETGPGSFVPIAEREKEEDARVAELQMRGTLMKNYGWPKAIVYVGVPLPLSGAWTAMFWSTCLGMKYGPSARGTLVGVGLSTLIGLTLWLAGPTGVLVYALVLALMYGEENPWTVLGRGLVTVKEGLMGLLGGRGKR 678
            MQQHLATTTLLVACLTSTSTAFHPPPISISPSSSIPSRSLYPASGSDKNLGFPSSLHRSSPSYAALSFASNQDPRRQYSRRPSRKDDNSQQERPIQGALPQVEERMSSLSPLARTVLRALPTVLVVVSFLVTCGPAVAHAAASSSLPTSVTPTRVNKVKEYILKPIGRWVGGIGNAPPLKMVRDTSLSLCSWTTHGPVGQSLAKAWNEPVARYMLDPTAPVGPYNLPGRVLEAIQARIPPSWSPLGVVALLSFLPIFEARVGVPFGLALGAPWLKALVVGLTANAVAIPVAAGVGLFCKNVEGVSPVLETATAARARYQTFERAYQELQGKLSVKTSLLEEEETGLRTTIDRAIDVVRKGQVLMDKATRQGLVREITEASRLLLQLNDADTRQFYARLEEQFFDTSVGSVLPDNKDGAFADVTVAELGQRRVELAWYPDVTLFPMLGQAVVTYQLEEIAAQAQADFCVRPRELLLLREEVASLKQEVEREGGRLKAAAKKAAEAGKETVSLARELESGVLTPEEKTEARKRAMAEAKEATTSETGPGSFVPIAEREKEEDARVAELQMRGTLMKNYGWPKAIVYVGVPLPLSGAWTAMFWSTCLGMKYGPSARGTLVGVGLSTLIGLTLWLAGPTGVLVYALVLALMYGEENPWTVLGRGLVTVKEGLMGLLGGRGKR
Sbjct:    1 MQQHLATTTLLVACLTSTSTAFHPPPISISPSSSIPSRSLYPASGSDKNLGFPSSLHRSSPSYAALSFASNQDPRRQYSRRPSRKDDNSQQERPIQGALPQVEERMSSLSPLARTVLRALPTVLVVVSFLVTCGPAVAHAAASSSLPTSVTPTRVNKVKEYILKPIGRWVGGIGNAPPLKMVRDTSLSLCSWTTHGPVGQSLAKAWNEPVARYMLDPTAPVGPYNLPGRVLEAIQARIPPSWSPLGVVALLSFLPIFEARVGVPFGLALGAPWLKALVVGLTANAVAIPVAAGVGLFCKNVEGVSPVLETATAARARYQTFERAYQELQGKLSVKTSLLEEEETGLRTTIDRAIDVVRKGQVLMDKATRQGLVREITEASRLLLQLNDADTRQFYARLEEQFFDTSVGSVLPDNKDGAFADVTVAELGQRRVELAWYPDVTLFPMLGQAVVTYQLEEIAAQAQADFCVRPRELLLLREEVASLKQEVEREGGRLKAAAKKAAEAGKETVSLARELESGVLTPEEKTEARKRAMAEAKEATTSETGPGSFVPIAEREKEEDARVAELQMRGTLMKNYGWPKAIVYVGVPLPLSGAWTAMFWSTCLGMKYGPSARGTLVGVGLSTLIGLTLWLAGPTGVLVYALVLALMYGEENPWTVLGRGLVTVKEGLMGLLGGRGKR 678
The following BLAST results are available for this feature:
BLAST of EWM21730.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102055|gb|EWM21730.1|0.000e+0100.00Putative small multi-drug export [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8973rna8973Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications