rna8972, rna8972 (mRNA) Nannochloropsis gaditana

Overview
Namerna8972
Unique Namerna8972
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length666
Alignment locationKK037250.1:609344..610110 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100505g4.3088.mrna
Orig protein idgnl|cribi|Naga_100505g4.3088
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:609344..610110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100505g4gene8697Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8972rna8972-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21728.1cds8942Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8972 ID=rna8972|Name=rna8972|organism=Nannochloropsis gaditana|type=mRNA|length=666bp
ATGCCCTCTTTCTTTCTCTTTCCTCGAGGCCTGACGGTGCGCGCTCCTTG
CGGCGCCGTCGGTCATGGTGGCCACTATCATTCTCAATCACCAGAAGCCT
ATTTCACCCATACTCCTGGACTCAAGGTGGTCATGCCCCGCTCCCCTGCC
GAGGCCAAGGGTCTCCTCCTCGCCTCTGTCCGGTGCCCCGATCCAGTCAT
TTTCCTCGAGCCCAAAGCCCTCTACCGCGCTGCCGTGGAGGAGGTCCCGG
AAGGTGACTATGGCATTCCTCTGGGTGAAGCGGAAGTGTTGCGCGCGGGC
TCTGACGTGACGGTGGTGGGCTGGGGAGGGCAGTTGAGAGTACTAGAGAA
GGCCTGCGAGCTCGCCGAGGGCCAGGGCATCTCCTGCGAGCTCATCGATC
TCCGCACGCTCTTGCCCTGGGACGCGGACACGATCATGGCCTCGGTCCAC
AAGACTGGTCGACTGGTCGTCAGCCACGAAGCGCCCAAAACAGGTGGTTT
TGCGGCGGAAGTGGTGGCGGAGATGCAGGAAAAATGCTTCCTCTTCCTCC
AAGCCCCCGTCCAGCGCGTGTGCGGGTACGACACGCCCTTCCCGCTAGTC
TTTGAAAAGGTGAAAGGGGAGGGAGGGAGGGAGGGCGGGAAGGAAGGAGG
GAGGGAGGGTGGGTAG
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protein sequence of rna8972

>rna8972-protein ID=rna8972-protein|Name=rna8972|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MEGGQGICATPEGYCHKAKRFSFLAKFPPQFEIVGHLGSLNEKECTWEKK
TRSTSALPRMPALRQAYALFKTAHRSSSRINTLHSKIGFCRRTLSSAAHV
LLVGRLCLFSSSLACRASVPSLGIAFPRLPRPSPFLSPGASLQSVFYSKL
CPSSPPCPLSSKQLRPSAQRSRGSSALPPSMTSLPASLTRKSGGTVLPQR
GVTMTSDSTGEAGKQGLSPPKRPGQRLSGAYFCPGND
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mRNA from alignment at KK037250.1:609344..610110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8972 ID=rna8972|Name=rna8972|organism=Nannochloropsis gaditana|type=mRNA|length=767bp|location=Sequence derived from alignment at KK037250.1:609344..610110+ (Nannochloropsis gaditana)
atggagggagggcaggggattTGTGTCTATGGAATGTGGTGCCGGACTTG
AAGCACTGACATATCACCATCACTCAGGCGACGCCAGAGGGTTATTGTCA
CAAGGCGAAGCGCTTTTCATTTTTAGCAAAGTTTCCTCCACAATTTGAAA
TCGTAGGGCATTTGGGGAGCTTGAATGAAAAAGAATGCacgtgggaaaaa
aaaacacggTCAACATCAGCCCTTCCTCGGATGCCTGCCTTACGCCAAGC
GTACGCGCTTTTCAAGACAGCGCAccgttcttcctcccgaaTTAATACGC
TGCACAGTAAGATTGGCTTCTGCAGACGcactctctcctccgccgctcat
gtcctccttgtcggacGGCTTTGTCtattctcgtcctcccttgcctgtaG
GGCCTCTGTGCCCTCTCTTGGCATAGCCTTTCCCaggcttcctcgtccct
ctccttttctgtCTCCCGGCGCCTCCCTGCAAAGTGTATTCTACTCTAAG
CTATGtccgtcctctccaccctgTCCCCTGTCGAGCAAGCAGCTGAGGCC
TTCGGCACAGCGTTCTCGCGGTTCCAgcgcgctccctccctccatgacCT
CGTTGCCGGCCTCACTGACGAGGAAGAGTGGAGGTACGGTACTTCCACAG
AGAGGAGTGACCATGACGAGTGACAGCACAGGAGAGGCTGGGAAGCAGGG
GCTGTCACCCCCAAAGCGTCCGGGACAGCGACTGTCCGGTGCTTATTTTT
GCCCAGGAAATGACTAG
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Coding sequence (CDS) from alignment at KK037250.1:609344..610110+

>rna8972 ID=rna8972|Name=rna8972|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at KK037250.1:609344..610110+ (Nannochloropsis gaditana)
atggagggagggcaggggattTGTGCGACGCCAGAGGGTTATTGTCACAA
GGCGAAGCGCTTTTCATTTTTAGCAAAGTTTCCTCCACAATTTGAAATCG
TAGGGCATTTGGGGAGCTTGAATGAAAAAGAATGCacgtgggaaaaaaaa
acacggTCAACATCAGCCCTTCCTCGGATGCCTGCCTTACGCCAAGCGTA
CGCGCTTTTCAAGACAGCGCAccgttcttcctcccgaaTTAATACGCTGC
ACAGTAAGATTGGCTTCTGCAGACGcactctctcctccgccgctcatgtc
ctccttgtcggacGGCTTTGTCtattctcgtcctcccttgcctgtaGGGC
CTCTGTGCCCTCTCTTGGCATAGCCTTTCCCaggcttcctcgtccctctc
cttttctgtCTCCCGGCGCCTCCCTGCAAAGTGTATTCTACTCTAAGCTA
TGtccgtcctctccaccctgTCCCCTGTCGAGCAAGCAGCTGAGGCCTTC
GGCACAGCGTTCTCGCGGTTCCAgcgcgctccctccctccatgacCTCGT
TGCCGGCCTCACTGACGAGGAAGAGTGGAGGTACGGTACTTCCACAGAGA
GGAGTGACCATGACGAGTGACAGCACAGGAGAGGCTGGGAAGCAGGGGCT
GTCACCCCCAAAGCGTCCGGGACAGCGACTGTCCGGTGCTTATTTTTGCC
CAGGAAATGACTAGatggagggagggcaggggattTGTGCGACGCCAGAG
GGTTATTGTCACAAGGCGAAGCGCTTTTCATTTTTAGCAAAGTTTCCTCC
ACAATTTGAAATCGTAGGGCATTTGGGGAGCTTGAATGAAAAAGAATGCa
cgtgggaaaaaaaaacacggTCAACATCAGCCCTTCCTCGGATGCCTGCC
TTACGCCAAGCGTACGCGCTTTTCAAGACAGCGCAccgttcttcctcccg
aaTTAATACGCTGCACAGTAAGATTGGCTTCTGCAGACGcactctctcct
ccgccgctcatgtcctccttgtcggacGGCTTTGTCtattctcgtcctcc
cttgcctgtaGGGCCTCTGTGCCCTCTCTTGGCATAGCCTTTCCCaggct
tcctcgtccctctccttttctgtCTCCCGGCGCCTCCCTGCAAAGTGTAT
TCTACTCTAAGCTATGtccgtcctctccaccctgTCCCCTGTCGAGCAAG
CAGCTGAGGCCTTCGGCACAGCGTTCTCGCGGTTCCAgcgcgctccctcc
ctccatgacCTCGTTGCCGGCCTCACTGACGAGGAAGAGTGGAGGTACGG
TACTTCCACAGAGAGGAGTGACCATGACGAGTGACAGCACAGGAGAGGCT
GGGAAGCAGGGGCTGTCACCCCCAAAGCGTCCGGGACAGCGACTGTCCGG
TGCTTATTTTTGCCCAGGAAATGACTAG
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Synonyms
Publications