rna8971, rna8971 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8971
Unique Name	rna8971
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	383
Alignment location	KK037250.1:605784..607312 -

Link to JBrowse

Properties


Property Name	Value
Product	branched-chain alpha-keto acid decarboxylase e1 beta subunit
Orig transcript id	gnl\|cribi\|Naga_101735g1.96.mrna
Orig protein id	gnl\|cribi\|Naga_101735g1.96
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:605784..607312 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101735g1	gene8696	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8971	rna8971-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21732.1	cds8941	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:605784..607312-
coding sequence from alignment at KK037250.1:605784..607312-

mRNA sequence

>rna8971 ID=rna8971|Name=rna8971|organism=Nannochloropsis gaditana|type=mRNA|length=383bp
AGGAGAGGGAATCCGAATCATTCCGCGGTAGCAAGATGCAGGGGAAAAGG
ACGAAGTGCCGCCTGTGCCTGGTGCCTTGTCCTCATCCCCCCCCTCCCCT
TCCTCGTGGTAGGTGTGGAAAATGCTGCGGGTGGTGAAGGAGGAGGAAGG
AGACCTCTTGGACGGCGAGGTGCCGGTGCCTCTGGACGAGGAGAGCTATC
GGATGTCGTACCAAATCATCACCGATCCCAAGTTCCCCGGCCAGTTCCGC
GTGGTAGGGAGGGAGGGAGGAGGGAGGGAGGGAGCGAGGGAGGAAGGAAG
GGAGGGAGGGAGGGAGGGAAATAGGACATGTCTCGTTCCTCCTTCCTCAT
TGACCGTCTCTCATGTCTCCTCCTAACCCACCC

protein sequence of rna8971

>rna8971-protein ID=rna8971-protein|Name=rna8971|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MPSFFLFPRGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPA
EAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAG
SDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVH
KTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLV
FEKVKGEGGREGGKEGGREGG

mRNA from alignment at KK037250.1:605784..607312-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8971 ID=rna8971|Name=rna8971|organism=Nannochloropsis gaditana|type=mRNA|length=1529bp|location=Sequence derived from alignment at KK037250.1:605784..607312- (Nannochloropsis gaditana)
ATGCCCTCTTTCTTTCTCTTTCCTCGTCACGACCTCGCCTCCTTCTCCTT
TCCCCTTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCCTC
CTTCCCTCTCTTCCAGGAGGCCTGACGGTGCGCGCTCCTTGCGGCGCCGT
CGGTCATGGTGGCCACTATCATTCTCAATCACCAGAAGCCTATTTCACCC
ATACTCCTGGACTCAAGGTTAGTGGAGAGTGAGGGAGGGAGGGAGGGAGG
GAAGGGAAAAGGGGGGGTCCCTAGGGTACCCGACCTTCTCTGCGGCAACC
GCAACATTTTCCTCACCGCTGCTTCTCCGTATCATCTTTACTTACGAAAG
ACTGCGCCGTGCACTCTTTCGCCCTTCTCCCTTCGCTTCCTCTCTCCCCT
CCACCCTCCCTTCCTCCCTCCCTCCTTCCCCCCCCCCCGAAAAGGTGGTC
ATGCCCCGCTCCCCTGCCGAGGCCAAGGGTCTCCTCCTCGCCTCTGTCCG
GTGCCCCGATCCAGTCATTTTCCTCGAGCCCAAAGCCCTCTACCGCGCTG
CCGTGGAGGAGGTAGGGAGGACGCTCCCGCGAAGACGTGGCACAATGCGG
GCTTGATCTTCACATTCCCACTCGACCCTTTTCCTTCCCTCCCTGCCTCC
CTCGCTCCCTCCCTCCTTCTCGCCCTCCCTCCCGCCCGGTCCTAGGTCCC
GGAAGGTGACTATGGCATTCCTCTGGGTGAAGCGGAAGTGTTGCGCGCGG
GCTCTGACGTGACGGTGGTGGGCTGGGGAGGGCAGTTGAGAGTACTAGAG
AAGGTAGGAAAAGGAAGGGGCGAGGATAAAGGAAGGGAAAGGGAGAGTGC
ACAGGGCCCCATGTGCTTTCATCGCGCTCATCCACATCCCTTCTCCGTCC
GTCCGTCAATTCCTCCCTCTCTCCCTCCTCCTCCCTCCCTCCCTCCCTGC
CTCCCTCCAGGCCTGCGAGCTCGCCGAGGGCCAGGGCATCTCCTGCGAGC
TCATCGATCTCCGCACGCTCTTGCCCTGGGACGCGGACACGATCATGGCC
TCGGTCCACAAGACTGGTCGACTGGTCGTCAGCCACGAAGCGCCCGTAAA
TCTGCCCTCCCTTCCCTCCCTCTTTCCCTCCCTCCCTTCCCTCCCTCTTT
CCCTCCCTCCCTTCTTCCTTCCCTCCCTATTTTCCTCCCTCCCTCCTTTC
CTACTACCTAGGGGGCACGTCCTGCATGTCGTCGCCCCTCCCCCTCTTTA
AGAAAACATCATTCAGTAGAAACTATTTCTACATATGCATTTGTGACCCC
CTCCCTCCCCCCTCCCTCCCCCCTCCCACTCCCTCTCTTCCCCTCCCAGA
AAACAGGTGGTTTTGCGGCGGAAGTGGTGGCGGAGATGCAGGAAAAATGC
TTCCTCTTCCTCCAAGCCCCCGTCCAGCGCGTGTGCGGGTACGACACGCC
CTTCCCGCTAGTCTTTGAAAAGGTGAAAGGGGAGGGAGGGAGGGAGGGCG
GGAAGGAAGGAGGGAGGGAGGGTGGGTAG

Coding sequence (CDS) from alignment at KK037250.1:605784..607312-

>rna8971 ID=rna8971|Name=rna8971|organism=Nannochloropsis gaditana|type=CDS|length=3996bp|location=Sequence derived from alignment at KK037250.1:605784..607312- (Nannochloropsis gaditana)
AAAACAGGTGGTTTTGCGGCGGAAGTGGTGGCGGAGATGCAGGAAAAATG
CTTCCTCTTCCTCCAAGCCCCCGTCCAGCGCGTGTGCGGGTACGACACGC
CCTTCCCGCTAGTCTTTGAAAAGGTGAAAGGGGAGGGAGGGAGGGAGGGC
GGGAAGGAAGGAGGGAGGGAGGGTGGGTAGGCCTGCGAGCTCGCCGAGGG
CCAGGGCATCTCCTGCGAGCTCATCGATCTCCGCACGCTCTTGCCCTGGG
ACGCGGACACGATCATGGCCTCGGTCCACAAGACTGGTCGACTGGTCGTC
AGCCACGAAGCGCCCGTCCCGGAAGGTGACTATGGCATTCCTCTGGGTGA
AGCGGAAGTGTTGCGCGCGGGCTCTGACGTGACGGTGGTGGGCTGGGGAG
GGCAGTTGAGAGTACTAGAGAAGGTGGTCATGCCCCGCTCCCCTGCCGAG
GCCAAGGGTCTCCTCCTCGCCTCTGTCCGGTGCCCCGATCCAGTCATTTT
CCTCGAGCCCAAAGCCCTCTACCGCGCTGCCGTGGAGGAGGAGGCCTGAC
GGTGCGCGCTCCTTGCGGCGCCGTCGGTCATGGTGGCCACTATCATTCTC
AATCACCAGAAGCCTATTTCACCCATACTCCTGGACTCAAGATGCCCTCT
TTCTTTCTCTTTCCTCAAAACAGGTGGTTTTGCGGCGGAAGTGGTGGCGG
AGATGCAGGAAAAATGCTTCCTCTTCCTCCAAGCCCCCGTCCAGCGCGTG
TGCGGGTACGACACGCCCTTCCCGCTAGTCTTTGAAAAGGTGAAAGGGGA
GGGAGGGAGGGAGGGCGGGAAGGAAGGAGGGAGGGAGGGTGGGTAGGCCT
GCGAGCTCGCCGAGGGCCAGGGCATCTCCTGCGAGCTCATCGATCTCCGC
ACGCTCTTGCCCTGGGACGCGGACACGATCATGGCCTCGGTCCACAAGAC
TGGTCGACTGGTCGTCAGCCACGAAGCGCCCGTCCCGGAAGGTGACTATG
GCATTCCTCTGGGTGAAGCGGAAGTGTTGCGCGCGGGCTCTGACGTGACG
GTGGTGGGCTGGGGAGGGCAGTTGAGAGTACTAGAGAAGGTGGTCATGCC
CCGCTCCCCTGCCGAGGCCAAGGGTCTCCTCCTCGCCTCTGTCCGGTGCC
CCGATCCAGTCATTTTCCTCGAGCCCAAAGCCCTCTACCGCGCTGCCGTG
GAGGAGGAGGCCTGACGGTGCGCGCTCCTTGCGGCGCCGTCGGTCATGGT
GGCCACTATCATTCTCAATCACCAGAAGCCTATTTCACCCATACTCCTGG
ACTCAAGATGCCCTCTTTCTTTCTCTTTCCTCAAAACAGGTGGTTTTGCG
GCGGAAGTGGTGGCGGAGATGCAGGAAAAATGCTTCCTCTTCCTCCAAGC
CCCCGTCCAGCGCGTGTGCGGGTACGACACGCCCTTCCCGCTAGTCTTTG
AAAAGGTGAAAGGGGAGGGAGGGAGGGAGGGCGGGAAGGAAGGAGGGAGG
GAGGGTGGGTAGGCCTGCGAGCTCGCCGAGGGCCAGGGCATCTCCTGCGA
GCTCATCGATCTCCGCACGCTCTTGCCCTGGGACGCGGACACGATCATGG
CCTCGGTCCACAAGACTGGTCGACTGGTCGTCAGCCACGAAGCGCCCGTC
CCGGAAGGTGACTATGGCATTCCTCTGGGTGAAGCGGAAGTGTTGCGCGC
GGGCTCTGACGTGACGGTGGTGGGCTGGGGAGGGCAGTTGAGAGTACTAG
AGAAGGTGGTCATGCCCCGCTCCCCTGCCGAGGCCAAGGGTCTCCTCCTC
GCCTCTGTCCGGTGCCCCGATCCAGTCATTTTCCTCGAGCCCAAAGCCCT
CTACCGCGCTGCCGTGGAGGAGGAGGCCTGACGGTGCGCGCTCCTTGCGG
CGCCGTCGGTCATGGTGGCCACTATCATTCTCAATCACCAGAAGCCTATT
TCACCCATACTCCTGGACTCAAGATGCCCTCTTTCTTTCTCTTTCCTCAA
AACAGGTGGTTTTGCGGCGGAAGTGGTGGCGGAGATGCAGGAAAAATGCT
TCCTCTTCCTCCAAGCCCCCGTCCAGCGCGTGTGCGGGTACGACACGCCC
TTCCCGCTAGTCTTTGAAAAGGTGAAAGGGGAGGGAGGGAGGGAGGGCGG
GAAGGAAGGAGGGAGGGAGGGTGGGTAGGCCTGCGAGCTCGCCGAGGGCC
AGGGCATCTCCTGCGAGCTCATCGATCTCCGCACGCTCTTGCCCTGGGAC
GCGGACACGATCATGGCCTCGGTCCACAAGACTGGTCGACTGGTCGTCAG
CCACGAAGCGCCCGTCCCGGAAGGTGACTATGGCATTCCTCTGGGTGAAG
CGGAAGTGTTGCGCGCGGGCTCTGACGTGACGGTGGTGGGCTGGGGAGGG
CAGTTGAGAGTACTAGAGAAGGTGGTCATGCCCCGCTCCCCTGCCGAGGC
CAAGGGTCTCCTCCTCGCCTCTGTCCGGTGCCCCGATCCAGTCATTTTCC
TCGAGCCCAAAGCCCTCTACCGCGCTGCCGTGGAGGAGGAGGCCTGACGG
TGCGCGCTCCTTGCGGCGCCGTCGGTCATGGTGGCCACTATCATTCTCAA
TCACCAGAAGCCTATTTCACCCATACTCCTGGACTCAAGATGCCCTCTTT
CTTTCTCTTTCCTCAAAACAGGTGGTTTTGCGGCGGAAGTGGTGGCGGAG
ATGCAGGAAAAATGCTTCCTCTTCCTCCAAGCCCCCGTCCAGCGCGTGTG
CGGGTACGACACGCCCTTCCCGCTAGTCTTTGAAAAGGTGAAAGGGGAGG
GAGGGAGGGAGGGCGGGAAGGAAGGAGGGAGGGAGGGTGGGTAGGCCTGC
GAGCTCGCCGAGGGCCAGGGCATCTCCTGCGAGCTCATCGATCTCCGCAC
GCTCTTGCCCTGGGACGCGGACACGATCATGGCCTCGGTCCACAAGACTG
GTCGACTGGTCGTCAGCCACGAAGCGCCCGTCCCGGAAGGTGACTATGGC
ATTCCTCTGGGTGAAGCGGAAGTGTTGCGCGCGGGCTCTGACGTGACGGT
GGTGGGCTGGGGAGGGCAGTTGAGAGTACTAGAGAAGGTGGTCATGCCCC
GCTCCCCTGCCGAGGCCAAGGGTCTCCTCCTCGCCTCTGTCCGGTGCCCC
GATCCAGTCATTTTCCTCGAGCCCAAAGCCCTCTACCGCGCTGCCGTGGA
GGAGGAGGCCTGACGGTGCGCGCTCCTTGCGGCGCCGTCGGTCATGGTGG
CCACTATCATTCTCAATCACCAGAAGCCTATTTCACCCATACTCCTGGAC
TCAAGATGCCCTCTTTCTTTCTCTTTCCTCAAAACAGGTGGTTTTGCGGC
GGAAGTGGTGGCGGAGATGCAGGAAAAATGCTTCCTCTTCCTCCAAGCCC
CCGTCCAGCGCGTGTGCGGGTACGACACGCCCTTCCCGCTAGTCTTTGAA
AAGGTGAAAGGGGAGGGAGGGAGGGAGGGCGGGAAGGAAGGAGGGAGGGA
GGGTGGGTAGGCCTGCGAGCTCGCCGAGGGCCAGGGCATCTCCTGCGAGC
TCATCGATCTCCGCACGCTCTTGCCCTGGGACGCGGACACGATCATGGCC
TCGGTCCACAAGACTGGTCGACTGGTCGTCAGCCACGAAGCGCCCGTCCC
GGAAGGTGACTATGGCATTCCTCTGGGTGAAGCGGAAGTGTTGCGCGCGG
GCTCTGACGTGACGGTGGTGGGCTGGGGAGGGCAGTTGAGAGTACTAGAG
AAGGTGGTCATGCCCCGCTCCCCTGCCGAGGCCAAGGGTCTCCTCCTCGC
CTCTGTCCGGTGCCCCGATCCAGTCATTTTCCTCGAGCCCAAAGCCCTCT
ACCGCGCTGCCGTGGAGGAGGAGGCCTGACGGTGCGCGCTCCTTGCGGCG
CCGTCGGTCATGGTGGCCACTATCATTCTCAATCACCAGAAGCCTATTTC
ACCCATACTCCTGGACTCAAGATGCCCTCTTTCTTTCTCTTTCCTC

Synonyms

Publications