EWM21732.1, cds8941 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|585102058|gb|EWM21732.1| (branched-chain alpha-keto acid decarboxylase e1 beta subunit [Nannochloropsis gaditana]) HSP 1 Score: 444.891 bits (1143), Expect = 5.564e-158 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 Query: 1 MPSFFLFPRGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKVKGEGGREGGKEGGREGG 221 MPSFFLFPRGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKVKGEGGREGGKEGGREGG Sbjct: 1 MPSFFLFPRGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKVKGEGGREGGKEGGREGG 221
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|298711658|emb|CBJ32712.1| (Branched chain alpha-keto acid dehydrogenase E1 beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 330.102 bits (845), Expect = 3.141e-109 Identity = 153/194 (78.87%), Postives = 174/194 (89.69%), Query Frame = 0 Query: 10 GLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203 GLT+RAPCGAVGHGGHYHSQSPE+YF HTPGLKVVMPR+ EAKGLLLASVR PDPVIF EPK LYR +VE+VP+GDY +PLG A+V+R G+DVT+VGWG QLRV+ +AC+ AE +GISCELIDLRT+LPWD DT+ SV KTGRLVVSHEAP+TGGFAAEV A+MQE+CFL L+APVQRVCGYDTPFPLVFEK Sbjct: 239 GLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKVVMPRNATEAKGLLLASVREPDPVIFFEPKILYRTSVEDVPDGDYEVPLGVADVMREGTDVTLVGWGAQLRVMSEACDDAEKEGISCELIDLRTILPWDFDTVSRSVKKTGRLVVSHEAPRTGGFAAEVAADMQERCFLHLEAPVQRVCGYDTPFPLVFEK 432
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|470529930|ref|XP_004368155.1| (branched-chain alpha-KETO ACID decarboxylase E1 beta subunit, putative [Acanthamoeba castellanii str. Neff] >gi|440804523|gb|ELR25400.1| branched-chain alpha-KETO ACID decarboxylase E1 beta subunit, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 320.472 bits (820), Expect = 3.510e-106 Identity = 148/194 (76.29%), Postives = 170/194 (87.63%), Query Frame = 0 Query: 10 GLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203 GLTVR PCGAVGHGGHYHSQSPEAYF HTPGLKVVMP +P EAKGLLL+S+R P+PVIFLEPK LYR+AVE+VP GDY +PLG+A +++ GSDVTVVGWG QL VL AC LAE +GISCELIDLRTL PWD DT+ ASV KTGRLVVSHEAPKTGGFA E+ + +QE+CFL L++P++R+CGYDTPFPLVFEK Sbjct: 183 GLTVRTPCGAVGHGGHYHSQSPEAYFCHTPGLKVVMPSTPKEAKGLLLSSIRDPNPVIFLEPKILYRSAVEDVPLGDYELPLGKARIVKEGSDVTVVGWGSQLHVLTDACGLAEKEGISCELIDLRTLAPWDVDTVEASVKKTGRLVVSHEAPKTGGFAGEICSTIQERCFLHLESPIRRICGYDTPFPLVFEK 376
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|1173945635|gb|OQR94235.1| (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial precursor [Thraustotheca clavata]) HSP 1 Score: 315.079 bits (806), Expect = 8.624e-105 Identity = 137/194 (70.62%), Postives = 169/194 (87.11%), Query Frame = 0 Query: 11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKV 204 LT R P GAVGHG HYHSQSPEAYF HTPGLKVVMPR+P +AKGLLLAS+R P+PV+F EPKALYRA+V EVP GD+ IPLG+A+++R GSD+T+VGWG Q+RVLE AC++AE G+SCELIDL+T+ PWD DT+ SV KTGRL++SHEAP+TGGFA+E+ + +QE+CFL L+AP+QRVCGYDTPFPL +EK+ Sbjct: 139 LTFRTPYGAVGHGAHYHSQSPEAYFAHTPGLKVVMPRNPTQAKGLLLASIRDPNPVVFFEPKALYRASVSEVPVGDFTIPLGQADIMRTGSDITLVGWGAQMRVLEDACDMAEEAGVSCELIDLQTITPWDVDTVEQSVRKTGRLIISHEAPRTGGFASEIASTIQERCFLNLEAPIQRVCGYDTPFPLAYEKL 332
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|669140414|ref|XP_008605775.1| (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Saprolegnia diclina VS20] >gi|530742689|gb|EQC40931.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Saprolegnia diclina VS20]) HSP 1 Score: 315.079 bits (806), Expect = 1.005e-104 Identity = 137/194 (70.62%), Postives = 171/194 (88.14%), Query Frame = 0 Query: 11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKV 204 LT RAP GAVGHG HYHSQSPEAYF HTPGLKVV+PR+P +AKGLLLAS+R P+PV+F EPKALYRA+V +VP GD+ +PLG+A+++R+G+D+T+VGWG Q+RVLE AC++AE G+SCELIDL+T+ PWD DT+ SV KTGRL+VSHEAPKTGGFA+E+ + +QE+CFL L+APVQRVCGYDTPFPL +EK+ Sbjct: 139 LTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKVVIPRNPTQAKGLLLASIRDPNPVVFFEPKALYRASVSDVPVGDFTVPLGQADIMRSGTDITIVGWGAQMRVLEDACDMAEEAGVSCELIDLQTITPWDVDTVEQSVRKTGRLIVSHEAPKTGGFASEIASTIQERCFLNLEAPVQRVCGYDTPFPLAYEKL 332
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|695427083|ref|XP_009529584.1| (hypothetical protein PHYSODRAFT_561567 [Phytophthora sojae] >gi|348676017|gb|EGZ15835.1| hypothetical protein PHYSODRAFT_561567 [Phytophthora sojae]) HSP 1 Score: 312.383 bits (799), Expect = 4.892e-104 Identity = 146/193 (75.65%), Postives = 167/193 (86.53%), Query Frame = 0 Query: 11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203 LT RAP GAVGHGGHYHSQSPEAYF HTPGLKVV+PR+PA AKGLLLAS+R P+PV+FLEPKALYRA+V EVP GDY L EAE++R G+DVTVVGWG Q+RVLE+AC AE GISCELIDL+T+ PWDADTI SV KTGRLV+SHEAPK+GGFAAE+ + MQE+CFL L+AP+QRVCGYDTPFPL +E Sbjct: 110 LTFRAPYGAVGHGGHYHSQSPEAYFAHTPGLKVVVPRNPAAAKGLLLASIRDPNPVLFLEPKALYRASVGEVPVGDYVQNLSEAEIVRRGTDVTVVGWGAQMRVLEEACSYAEDVGISCELIDLQTIFPWDADTIEHSVRKTGRLVISHEAPKSGGFAAEISSSMQERCFLSLEAPIQRVCGYDTPFPLAYES 302
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|223994885|ref|XP_002287126.1| (alpha-keto acid dehydrogenase, partial [Thalassiosira pseudonana CCMP1335] >gi|220976242|gb|EED94569.1| alpha-keto acid dehydrogenase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 311.612 bits (797), Expect = 9.847e-104 Identity = 142/194 (73.20%), Postives = 168/194 (86.60%), Query Frame = 0 Query: 10 GLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203 G+T+RAPCGAVGHGG YHSQSPEAY HTPG+ VVMPR P AKGLLL+S+RC DPVIFLEPK LYR+AVEEVP+ DY IPLG+AEV+R GSDVT+VGWG QLR LE AC+LA +GISCELIDLRT+LPWD++ I+ SV KTG+L+VSHEAP T GF AEVVA +Q++CF +L+AP+QR+CGYDTPF LV+EK Sbjct: 109 GVTLRAPCGAVGHGGLYHSQSPEAYLAHTPGITVVMPRGPRCAKGLLLSSIRCKDPVIFLEPKILYRSAVEEVPDADYEIPLGKAEVMRTGSDVTIVGWGSQLRTLETACDLASKEGISCELIDLRTILPWDSECIIQSVQKTGKLIVSHEAPITCGFGAEVVATLQQECFFYLEAPIQRICGYDTPFGLVYEK 302
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|635370084|emb|CCI41764.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 309.301 bits (791), Expect = 1.101e-102 Identity = 144/193 (74.61%), Postives = 166/193 (86.01%), Query Frame = 0 Query: 11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203 LTVRAP GAVGHGGHYHSQSPEAYF+HTPGLKVVMPR P +AKGLLLAS+R +PVIFLEPKA YRA V EVP GDY PL AE++R G+DVT+VGWG Q+++LEKAC++A GISCELIDL+T+LPWDA TI SV KTGRLVVSHEAPKT GFAAE+ A +QE+CFL L+AP+QR+CGYD PFPL+FEK Sbjct: 122 LTVRAPYGAVGHGGHYHSQSPEAYFSHTPGLKVVMPRDPIKAKGLLLASIRDDNPVIFLEPKAFYRATVAEVPLGDYIEPLERAEIVRRGNDVTIVGWGAQVKLLEKACDMANKIGISCELIDLQTILPWDARTIEQSVRKTGRLVVSHEAPKTSGFAAEIAATIQERCFLSLEAPIQRICGYDAPFPLIFEK 314
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|635370085|emb|CCI41765.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 310.457 bits (794), Expect = 1.395e-102 Identity = 144/193 (74.61%), Postives = 166/193 (86.01%), Query Frame = 0 Query: 11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203 LTVRAP GAVGHGGHYHSQSPEAYF+HTPGLKVVMPR P +AKGLLLAS+R +PVIFLEPKA YRA V EVP GDY PL AE++R G+DVT+VGWG Q+++LEKAC++A GISCELIDL+T+LPWDA TI SV KTGRLVVSHEAPKT GFAAE+ A +QE+CFL L+AP+QR+CGYD PFPL+FEK Sbjct: 158 LTVRAPYGAVGHGGHYHSQSPEAYFSHTPGLKVVMPRDPIKAKGLLLASIRDDNPVIFLEPKAFYRATVAEVPLGDYIEPLERAEIVRRGNDVTIVGWGAQVKLLEKACDMANKIGISCELIDLQTILPWDARTIEQSVRKTGRLVVSHEAPKTSGFAAEIAATIQERCFLSLEAPIQRICGYDAPFPLIFEK 350
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|953495389|emb|CEG43296.1| (2-oxoisovalerate dehydrogenase subunit mitochondrial [Plasmopara halstedii]) HSP 1 Score: 308.531 bits (789), Expect = 1.528e-102 Identity = 144/193 (74.61%), Postives = 167/193 (86.53%), Query Frame = 0 Query: 11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203 LT+RAP GAVGHGGHYHSQSPEAYF HTPGLKVV+PR+PA AKGLLLAS+R P+PVIFLEPKALYRA+V EVP G+Y L EAE+LR G+D+TVVGWG Q+RVLE+AC AE GISCELIDL+T+ PWDADTI SV KTGRLV+SHEAPK+GGFAAE+ + +QE+CFL L+AP+QRVCGYD PFPL +E Sbjct: 107 LTLRAPYGAVGHGGHYHSQSPEAYFAHTPGLKVVVPRNPATAKGLLLASIRDPNPVIFLEPKALYRASVGEVPVGEYVQNLSEAEILRQGTDITVVGWGAQMRVLEEACRYAEDVGISCELIDLQTVFPWDADTIEHSVRKTGRLVISHEAPKSGGFAAEISSSIQERCFLSLEAPIQRVCGYDIPFPLAYES 299 The following BLAST results are available for this feature:
BLAST of EWM21732.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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