EWM21732.1, cds8941 (CDS) Nannochloropsis gaditana

Overview
NameEWM21732.1
Unique Namecds8941
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:607288..607312 -
Alignment locationKK037250.1:607096..607196 -
Alignment locationKK037250.1:606752..606868 -
Alignment locationKK037250.1:606510..606617 -
Alignment locationKK037250.1:606218..606352 -
Alignment locationKK037250.1:605784..605963 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21732.1
Productbranched-chain alpha-keto acid decarboxylase e1 beta subunit
Orig transcript idgnl|cribi|Naga_101735g1.96.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:607288..607312 -
KK037250.1supercontigKK037250.1:607096..607196 -
KK037250.1supercontigKK037250.1:606752..606868 -
KK037250.1supercontigKK037250.1:606510..606617 -
KK037250.1supercontigKK037250.1:606218..606352 -
KK037250.1supercontigKK037250.1:605784..605963 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0042221response to chemical
GO:0009056catabolic process
GO:0009605response to external stimulus
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR009014Transketo_C/Pyr-ferredox_oxred
IPR005475Transketolase-like_Pyr-bd
IPR033248Transketolase_C
IPR029061THDP-binding
Homology
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|585102058|gb|EWM21732.1| (branched-chain alpha-keto acid decarboxylase e1 beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 444.891 bits (1143), Expect = 5.564e-158
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MPSFFLFPRGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKVKGEGGREGGKEGGREGG 221
            MPSFFLFPRGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKVKGEGGREGGKEGGREGG
Sbjct:    1 MPSFFLFPRGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKVKGEGGREGGKEGGREGG 221          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|298711658|emb|CBJ32712.1| (Branched chain alpha-keto acid dehydrogenase E1 beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 330.102 bits (845), Expect = 3.141e-109
Identity = 153/194 (78.87%), Postives = 174/194 (89.69%), Query Frame = 0
Query:   10 GLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203
            GLT+RAPCGAVGHGGHYHSQSPE+YF HTPGLKVVMPR+  EAKGLLLASVR PDPVIF EPK LYR +VE+VP+GDY +PLG A+V+R G+DVT+VGWG QLRV+ +AC+ AE +GISCELIDLRT+LPWD DT+  SV KTGRLVVSHEAP+TGGFAAEV A+MQE+CFL L+APVQRVCGYDTPFPLVFEK
Sbjct:  239 GLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKVVMPRNATEAKGLLLASVREPDPVIFFEPKILYRTSVEDVPDGDYEVPLGVADVMREGTDVTLVGWGAQLRVMSEACDDAEKEGISCELIDLRTILPWDFDTVSRSVKKTGRLVVSHEAPRTGGFAAEVAADMQERCFLHLEAPVQRVCGYDTPFPLVFEK 432          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|470529930|ref|XP_004368155.1| (branched-chain alpha-KETO ACID decarboxylase E1 beta subunit, putative [Acanthamoeba castellanii str. Neff] >gi|440804523|gb|ELR25400.1| branched-chain alpha-KETO ACID decarboxylase E1 beta subunit, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 320.472 bits (820), Expect = 3.510e-106
Identity = 148/194 (76.29%), Postives = 170/194 (87.63%), Query Frame = 0
Query:   10 GLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203
            GLTVR PCGAVGHGGHYHSQSPEAYF HTPGLKVVMP +P EAKGLLL+S+R P+PVIFLEPK LYR+AVE+VP GDY +PLG+A +++ GSDVTVVGWG QL VL  AC LAE +GISCELIDLRTL PWD DT+ ASV KTGRLVVSHEAPKTGGFA E+ + +QE+CFL L++P++R+CGYDTPFPLVFEK
Sbjct:  183 GLTVRTPCGAVGHGGHYHSQSPEAYFCHTPGLKVVMPSTPKEAKGLLLSSIRDPNPVIFLEPKILYRSAVEDVPLGDYELPLGKARIVKEGSDVTVVGWGSQLHVLTDACGLAEKEGISCELIDLRTLAPWDVDTVEASVKKTGRLVVSHEAPKTGGFAGEICSTIQERCFLHLESPIRRICGYDTPFPLVFEK 376          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|1173945635|gb|OQR94235.1| (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 315.079 bits (806), Expect = 8.624e-105
Identity = 137/194 (70.62%), Postives = 169/194 (87.11%), Query Frame = 0
Query:   11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKV 204
            LT R P GAVGHG HYHSQSPEAYF HTPGLKVVMPR+P +AKGLLLAS+R P+PV+F EPKALYRA+V EVP GD+ IPLG+A+++R GSD+T+VGWG Q+RVLE AC++AE  G+SCELIDL+T+ PWD DT+  SV KTGRL++SHEAP+TGGFA+E+ + +QE+CFL L+AP+QRVCGYDTPFPL +EK+
Sbjct:  139 LTFRTPYGAVGHGAHYHSQSPEAYFAHTPGLKVVMPRNPTQAKGLLLASIRDPNPVVFFEPKALYRASVSEVPVGDFTIPLGQADIMRTGSDITLVGWGAQMRVLEDACDMAEEAGVSCELIDLQTITPWDVDTVEQSVRKTGRLIISHEAPRTGGFASEIASTIQERCFLNLEAPIQRVCGYDTPFPLAYEKL 332          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|669140414|ref|XP_008605775.1| (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Saprolegnia diclina VS20] >gi|530742689|gb|EQC40931.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Saprolegnia diclina VS20])

HSP 1 Score: 315.079 bits (806), Expect = 1.005e-104
Identity = 137/194 (70.62%), Postives = 171/194 (88.14%), Query Frame = 0
Query:   11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEKV 204
            LT RAP GAVGHG HYHSQSPEAYF HTPGLKVV+PR+P +AKGLLLAS+R P+PV+F EPKALYRA+V +VP GD+ +PLG+A+++R+G+D+T+VGWG Q+RVLE AC++AE  G+SCELIDL+T+ PWD DT+  SV KTGRL+VSHEAPKTGGFA+E+ + +QE+CFL L+APVQRVCGYDTPFPL +EK+
Sbjct:  139 LTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKVVIPRNPTQAKGLLLASIRDPNPVVFFEPKALYRASVSDVPVGDFTVPLGQADIMRSGTDITIVGWGAQMRVLEDACDMAEEAGVSCELIDLQTITPWDVDTVEQSVRKTGRLIVSHEAPKTGGFASEIASTIQERCFLNLEAPVQRVCGYDTPFPLAYEKL 332          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|695427083|ref|XP_009529584.1| (hypothetical protein PHYSODRAFT_561567 [Phytophthora sojae] >gi|348676017|gb|EGZ15835.1| hypothetical protein PHYSODRAFT_561567 [Phytophthora sojae])

HSP 1 Score: 312.383 bits (799), Expect = 4.892e-104
Identity = 146/193 (75.65%), Postives = 167/193 (86.53%), Query Frame = 0
Query:   11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203
            LT RAP GAVGHGGHYHSQSPEAYF HTPGLKVV+PR+PA AKGLLLAS+R P+PV+FLEPKALYRA+V EVP GDY   L EAE++R G+DVTVVGWG Q+RVLE+AC  AE  GISCELIDL+T+ PWDADTI  SV KTGRLV+SHEAPK+GGFAAE+ + MQE+CFL L+AP+QRVCGYDTPFPL +E 
Sbjct:  110 LTFRAPYGAVGHGGHYHSQSPEAYFAHTPGLKVVVPRNPAAAKGLLLASIRDPNPVLFLEPKALYRASVGEVPVGDYVQNLSEAEIVRRGTDVTVVGWGAQMRVLEEACSYAEDVGISCELIDLQTIFPWDADTIEHSVRKTGRLVISHEAPKSGGFAAEISSSMQERCFLSLEAPIQRVCGYDTPFPLAYES 302          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|223994885|ref|XP_002287126.1| (alpha-keto acid dehydrogenase, partial [Thalassiosira pseudonana CCMP1335] >gi|220976242|gb|EED94569.1| alpha-keto acid dehydrogenase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 311.612 bits (797), Expect = 9.847e-104
Identity = 142/194 (73.20%), Postives = 168/194 (86.60%), Query Frame = 0
Query:   10 GLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203
            G+T+RAPCGAVGHGG YHSQSPEAY  HTPG+ VVMPR P  AKGLLL+S+RC DPVIFLEPK LYR+AVEEVP+ DY IPLG+AEV+R GSDVT+VGWG QLR LE AC+LA  +GISCELIDLRT+LPWD++ I+ SV KTG+L+VSHEAP T GF AEVVA +Q++CF +L+AP+QR+CGYDTPF LV+EK
Sbjct:  109 GVTLRAPCGAVGHGGLYHSQSPEAYLAHTPGITVVMPRGPRCAKGLLLSSIRCKDPVIFLEPKILYRSAVEEVPDADYEIPLGKAEVMRTGSDVTIVGWGSQLRTLETACDLASKEGISCELIDLRTILPWDSECIIQSVQKTGKLIVSHEAPITCGFGAEVVATLQQECFFYLEAPIQRICGYDTPFGLVYEK 302          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|635370084|emb|CCI41764.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 309.301 bits (791), Expect = 1.101e-102
Identity = 144/193 (74.61%), Postives = 166/193 (86.01%), Query Frame = 0
Query:   11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203
            LTVRAP GAVGHGGHYHSQSPEAYF+HTPGLKVVMPR P +AKGLLLAS+R  +PVIFLEPKA YRA V EVP GDY  PL  AE++R G+DVT+VGWG Q+++LEKAC++A   GISCELIDL+T+LPWDA TI  SV KTGRLVVSHEAPKT GFAAE+ A +QE+CFL L+AP+QR+CGYD PFPL+FEK
Sbjct:  122 LTVRAPYGAVGHGGHYHSQSPEAYFSHTPGLKVVMPRDPIKAKGLLLASIRDDNPVIFLEPKAFYRATVAEVPLGDYIEPLERAEIVRRGNDVTIVGWGAQVKLLEKACDMANKIGISCELIDLQTILPWDARTIEQSVRKTGRLVVSHEAPKTSGFAAEIAATIQERCFLSLEAPIQRICGYDAPFPLIFEK 314          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|635370085|emb|CCI41765.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 310.457 bits (794), Expect = 1.395e-102
Identity = 144/193 (74.61%), Postives = 166/193 (86.01%), Query Frame = 0
Query:   11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203
            LTVRAP GAVGHGGHYHSQSPEAYF+HTPGLKVVMPR P +AKGLLLAS+R  +PVIFLEPKA YRA V EVP GDY  PL  AE++R G+DVT+VGWG Q+++LEKAC++A   GISCELIDL+T+LPWDA TI  SV KTGRLVVSHEAPKT GFAAE+ A +QE+CFL L+AP+QR+CGYD PFPL+FEK
Sbjct:  158 LTVRAPYGAVGHGGHYHSQSPEAYFSHTPGLKVVMPRDPIKAKGLLLASIRDDNPVIFLEPKAFYRATVAEVPLGDYIEPLERAEIVRRGNDVTIVGWGAQVKLLEKACDMANKIGISCELIDLQTILPWDARTIEQSVRKTGRLVVSHEAPKTSGFAAEIAATIQERCFLSLEAPIQRICGYDAPFPLIFEK 350          
BLAST of EWM21732.1 vs. NCBI_GenBank
Match: gi|953495389|emb|CEG43296.1| (2-oxoisovalerate dehydrogenase subunit mitochondrial [Plasmopara halstedii])

HSP 1 Score: 308.531 bits (789), Expect = 1.528e-102
Identity = 144/193 (74.61%), Postives = 167/193 (86.53%), Query Frame = 0
Query:   11 LTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLASVRCPDPVIFLEPKALYRAAVEEVPEGDYGIPLGEAEVLRAGSDVTVVGWGGQLRVLEKACELAEGQGISCELIDLRTLLPWDADTIMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQEKCFLFLQAPVQRVCGYDTPFPLVFEK 203
            LT+RAP GAVGHGGHYHSQSPEAYF HTPGLKVV+PR+PA AKGLLLAS+R P+PVIFLEPKALYRA+V EVP G+Y   L EAE+LR G+D+TVVGWG Q+RVLE+AC  AE  GISCELIDL+T+ PWDADTI  SV KTGRLV+SHEAPK+GGFAAE+ + +QE+CFL L+AP+QRVCGYD PFPL +E 
Sbjct:  107 LTLRAPYGAVGHGGHYHSQSPEAYFAHTPGLKVVVPRNPATAKGLLLASIRDPNPVIFLEPKALYRASVGEVPVGEYVQNLSEAEILRQGTDITVVGWGAQMRVLEEACRYAEDVGISCELIDLQTVFPWDADTIEHSVRKTGRLVISHEAPKSGGFAAEISSSIQERCFLSLEAPIQRVCGYDIPFPLAYES 299          
The following BLAST results are available for this feature:
BLAST of EWM21732.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102058|gb|EWM21732.1|5.564e-158100.00branched-chain alpha-keto acid decarboxylase e1 be... [more]
gi|298711658|emb|CBJ32712.1|3.141e-10978.87Branched chain alpha-keto acid dehydrogenase E1 be... [more]
gi|470529930|ref|XP_004368155.1|3.510e-10676.29branched-chain alpha-KETO ACID decarboxylase E1 be... [more]
gi|1173945635|gb|OQR94235.1|8.624e-10570.622-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
gi|669140414|ref|XP_008605775.1|1.005e-10470.622-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
gi|695427083|ref|XP_009529584.1|4.892e-10475.65hypothetical protein PHYSODRAFT_561567 [Phytophtho... [more]
gi|223994885|ref|XP_002287126.1|9.847e-10473.20alpha-keto acid dehydrogenase, partial [Thalassios... [more]
gi|635370084|emb|CCI41764.1|1.101e-10274.61unnamed protein product [Albugo candida][more]
gi|635370085|emb|CCI41765.1|1.395e-10274.61unnamed protein product [Albugo candida][more]
gi|953495389|emb|CEG43296.1|1.528e-10274.612-oxoisovalerate dehydrogenase subunit mitochondri... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8971rna8971Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications