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Properties
| Property Name | Value |
|---|
| Product | thioredoxin |
| Orig transcript id | gnl|cribi|Naga_100270g7.5535.mrna |
| Orig protein id | gnl|cribi|Naga_100270g7.5535 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:594367..598134 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8966 ID=rna8966|Name=rna8966|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp
ACACAAGGAGGGAAGCTGAGTAACTGGGCTTCAGAAGCGCGTGCGATGGA
TTCCGAGGCATAGATGGGAAGGAGTGCAAGAAAGGTACGGGCATGCAATG
AGGGACGCTTGATCCACTTTCCCCGTCTATGCACAGTCCACTCGAACCAA
ACAGGTCACCATGGACACAAGGAACAATCTAACGCAAATATTAGTTAGGA
AGGCGCACGATGTGCTGATGTCGCAAGCCCAGCGATGAAGCGAGGGAAGA
CACCGATGATCCTAGAAGCTTCTACTGTGATGGCACGTAGTTTGGAAATG
GCATGGTCCCATGCAGCACTTTGACGACTAGAAAGGCAACTAAGCATCTC
CAAATCCCTCACCATGAGCCTGTTTTCACGCGAGCCTTGCCTTTTATTGC
CATGTCCTGGCCATCAGGTCGACTGCCAAATCGCAAACTTCAAGACATAC
CACCCGTTGAATGTGGAAGCAGGGACAACAAGGATTTAATTGGTGGAAAG
GACTTCAAAGTATTTGACGCGTGGGCTAAACGCTCCAAAAACGTATTCAA
TACCAGCAGAAGGCATCGTGTCATCAGCATGGACCCGTGTGCTTCCTCTT
CCGATGTAATTGCGGCGCTTCAAGCTGAAATAACCTCCCTCCGGACAGCC
CTCCACAGTGTTACTGCTGCCTCTTCGCCTCCTCCTCCATGTACAACCAC
GTCTTCCCCCGTGTTTAGGCCTGGCCGCATCAAAATCGACCACATGTCTG
CAGAGGTCACAGACAGCAATCCGTACAGCCGTCTAATGGCGCTCAAACGC
ATGGGCGTTGTGAAGGAGTATGAACGCATCCGAGAGGTATCCGTCCTCAT
TGTTGGTCTGGGCGGCGTAGGGTCTGTGGCGGCCGAAATGTTGACTCGAT
GCGGAATTGGGAAGCTTCTGCTCTTTGACTATGATGTCGTGGAGCTGGCC
AACATGAACCGTCTCTTTTTTCGACCCGAACATGCAGGCCTACGCAAGAC
GGAGGCCGCCACGGCCACTTTGGAAAGCATCAATCCGGACGTGTGCCTGG
AGGGGCACACCTACGACGTCACAAGCGTGCCGCACTTTGAGCATTTCTTG
GACCGCCTCCGCCGTGGCGGTCCAGATGGAAGGTCACCCGTCCATTTGGT
CCTAAGCTGCGTCGACAATTACGCTGCCCGCACTGCCATTAACCAGGCTT
GCAACGAAGCGGACGTGGCGTGGATGGAGTCGGGCGTGAGCGAAGACGCG
GTCTCTGGGCATATCCAGACGCTTTTCCCCGGTCGAACCGCGTGTTTTGA
GTGCCTTCCCCCACTCCTGGTGGCCTCGGGCGTGGAGGAAAGCACCTTGC
GACGGGAAGGGGTCTGTGCCGCTTCCTTACCCACCACCATGGGCATCGTC
GCAGGATTATTGGTGCAAAACGCCCTCAAATACCTTTTGGATTTCGGCGA
CCTGTCGTACTATCTGGGGTACAGCGCGTTGACCGATCATTTCCCTCGGC
ACACCCTGTGGCCGAACCCGGATTGTGGCAATATGTGGTGCCGGCGACGG
CAAGAAACCTGGCGAGGGAAGGGTAGGGCTTGGCAGAGAAGGGAAACGGA
CTGCCGGGAGATGGGGGAGGGCGCGGGGCCGGTGCACGGGACGAATGAAT
GGGGCATTGAGGTGATTGGGAGGGAAGGGGTTGATGTGGAGGGGGAGGTA
GGAGTGGAGAGGGGCAGCGCAGGGTCCGTACAACAAAGCGGGAGGGAAGG
AACGGAAGCCTCCTTGGAAGAATTGGCAGCAGAGCTCTCTCAGCTTCAAT
CCTAAGGAAATGGCAACGGCCAGTGCGGAGGACGCTGGAGCCCTGGCAAA
ATGTGACGCAAAGCGCACCAAAGAAAGTACCCCGTAAATCCAGGTATGTA
TGGCGCCGTGGACTGACGTACCGACCATCACGCCTTATCGTGCAAAGCAA
CGGTGGATAGGATCAGCGCCCCGCTCTCCCCGGGGGGAAATCCACGCGCA
CTGCGCTAGGCCTGATGCATTGCTTTAGGCCCCTTTGCGTCTCCTTACAT
GCCTCCTTTTCGCGGCACCTGCTGACACCGGATCTCTT back to topprotein sequence of rna8966 >rna8966-protein ID=rna8966-protein|Name=rna8966|organism=Nannochloropsis gaditana|type=polypeptide|length=377bp
MPVPFLHSFPSMPRNPSHALLKPSYSASLLVSLTRSQRFMNSRLFAVSAC
RRAVSARQRQPTSTVSRIALRGLASSKHPPSSPPPPQGMGANGLIGLPPN
PRPPPSRKPSQPTPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASW
CDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGL
CEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAV
LKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCL
AGLARCALRGGAREEAKELVGMLKRQHKADMETMPVRKRGRKWGREGWVG
RNLCGNHSRQPLPRRRSGRPSPSSKWP back to topmRNA from alignment at KK037250.1:594367..598134+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8966 ID=rna8966|Name=rna8966|organism=Nannochloropsis gaditana|type=mRNA|length=3768bp|location=Sequence derived from alignment at KK037250.1:594367..598134+ (Nannochloropsis gaditana)
AAGGCTCGCGTGAAAACAGGCTCATGGTGAGGGATTTGGAGATGCTTAGT
TGCCTTTCTAGTCGTCAAAGTGCTGCATGGGACCATGCCATTTCCAAACT
ACGTGCCATCACAGTAGAAGCTTCTAGGATCATCGGTGTCTTCCCTCGCT
TCATCGCTGGGCTTGCGACATCAGCACATCGTGCGCCTTCCTAACTAATA
TTTGCGTTAGATTGTTCCTTGTGTCCATGGTGACCTGTTTGGTTCGAGTG
GACTGTGCATAGACGGGGAAAGTGGATCAAGCGTCCCTCATTGCATGCCC
GTACCTTTCTTGCACTCCTTCCCATCTATGCCTCGGAATCCATCGCACGC
GCTTCTGAAGCCCAGTTACtcagcttccctccttgtgtcTCTCACTCGCT
CACAGAGATTCATGAACTCCCGCTTATTTGCTGTCAGCGCATGCAGGAGA
GCTGTGAGTGCTAGGCAGCGGCAGCCCACTTCAACAGTATCTCGGATCGC
CCTCCGCGGTTTAGCTTCGTCCAaacatcctccttcctctcctccccccc
cccaaggcaTGGGTGCCAACGGTCTGatcggcctccctccaaacccccgc
ccaccgccctcTCGCAAACCATCGCAGCCGACACCGACTCCCGCAACTGC
GCGCATGCCCTCTGTGATTGAAGTGGACGTTAAGAACTTCGTGGCCTTGC
TCAAGTCCCCTGTCCCCGTCATCCTCGATTGCTACGCAAGCTGGTGCGAC
CCGTGCAAAAAACTGACGCCCGTGCTTGAACGCATCGTCGGCAAGTACCC
GGGGAGGCTAATATTGGCCAAGCTCGACGTGGACAACCACCAGGAGCTGG
CGGCTCAATTGAACGTGAgctccctcccagccgtCTTCGGCCTGTGCGAA
GGGAAACTTGTGGACCGATTCGTGGGGATGCCCACCGAGCCAGTGCTGGC
TGGGTTCTTGGACAAAATGCTCTCGATCATCCCGACCTCctcggggcagg
aagggaagggcgagcCATCCCCGGCGGAGAAACAGGAGGCGGTGTTGAAG
CGGGCGGATGCGCTGCTGACCGAGGggacaaaggaggggggaagcgggga
gaCGGCGACAGAGGCAGGCGCACTCTACCGCCAAGTGTACGAAGagctgg
ggaaggaggatacGCCGGCCACCTATCTGCAAGCGAGGTGCCTGGCAGGG
TTGGCGCGGTGTGCattgcggggaggggcgagggaggaggccaaggagtT
GGTGGGCATGCTCAAGAGGCAGCACAAGGCGGATATGGAGACGATGCCgg
taaggaagagggggaggaagtgggggagggagggctgggtgGGAAGGAAT
CTTTGCGGGAATCATTCAAGGCAGCCCCTGCCCCGCAGGAGGTCCGGGCG
GCCGTCTCCTTCGTCGAAGTGGCCTTAGAGGCTcctgcggaggaagacgg
ggcgtCCCTTGAAGACACCTTAACAAAGCTTCAAGGTAGCGTCATGGCCA
ATCCTGGTGACTTGGAAGCACGCTACAACTTGGCTTTGAAGAACTTTCAG
CTGCAGCGCTTTGAAACCTCCATCGACGCCTGTTTGGaggtaaggggggg
ggaaggcgggaaggatggagggagagagaaaggaagtggAAAGAAGCAAG
AATGAAGGATCgagaggatggaaaaagaagcccaaaagaaagaaagggcg
AGGGTGAAAGTCGCCAGGGTAAGAGAGGAGTGAGAGCTGTGTAGGAgata
gggaggagagggcaggacGGGACCCTGCcagctcttctttttttaaaaat
atACCCGGCTTACCAACGACCCCCGCCTGTGCCCTcggcctttccttccc
attctTCCCCGCAGATTTTGAAACGGGACAaggcctggaaggagggggcg
gcccAGGCACTCTTGCTCAAGACCTTCGAGGCTCTGGGTCCGGAGAGCGA
CCTGACCAGGAGAGGGCGCCAGCGCATGACCAACTACCTCTTTCTCTAGG
ATATTCGCAGGCATTTTCAAAAATATCCGCGTCGCTGGGCCCttgtgtcc
ctcctccttcccctccaccccttcctgcgtctcctccctcttttctccct
cctttttgtcttcctcctctttggcaCCGGAAGTCCCCGGGCCGGTAGTA
GACCCTCCCGTGGGCTCGCGAGGGGGACGGTCGGAGTCTGGTAGGGAATT
CTCCATAGAGTGAACGGGCAACACCTGGGCGAGGCTGATCGCGTAATGGC
TCCTCAGAAAGCAAGAAATGTCGCTTGTGCATGCCAGCAGAAGAATGAGA
TGCATTGTTGTTGTGGCCGGTGTACTCCGGTAGCCCCagtttcccccccc
gccctccttcctgtcctcgtttcccccctgcTTAAGCcttctcctcactc
cctcctcccggtcgcacccgctttctccccggGAACCGGCTCGCGGCCTG
AGACATTGATaacatctccctctcccctcgtgCCTCCCGCCCGGTTCATG
TCGGCCTtcgagaagaggatgaccaTTTAGACACCCAACACGCCGGTCTG
ACTGTCCCTTGCACTGCCACATTCCGGCACTTCACAGGACTTTTCGCACC
CCAACCCGCCTTCGTGCGCACCCCTCgttgccttccctccctgcctcgtc
cttgcCCGGGGGCATGTCGCTCAATCACCACACAGCAGAAGCCATCGTCC
GGCTCCTAGGCCTCCAACCTCgtaagaaggagggagagagggggggtaac
gtgcaagggaggggacgggacCCGACGTCCCTCGCGCTTCCAGGGTCCGT
CAAGTTCAACCCTCCGGGCTCTCCACGTCGCGATGTCCTGATGCCACCCT
TCTTtactttctcccctttcttcagACCCTGAGGGCGGATTTTTCAAGGA
AACCTACCGCAGTGGCGCCTGTCCAGGGGCTTCTCAAGGACTCACTGACA
CAAGcggcaccctccttccctcctcaccctctcccgcctcctctctcccg
tcctccccccgcaacATCTGCACCTCGATCTTCTACCTCCTGACCACCGA
GGCACCCGTTGGGTTTTGGCACAAAAACCGCTCAAACATCGTCCACTACT
ATCAAGGGGGCGATCCCCTCGCctactacctcctccccccatccacCGGA
CGCCTGGAAAGACATGTCCTGGGGCCCGACCTGGCCCACGGGCACACGCT
GCAGTTGATCGTCGAAGGGGGAGTGTGGAAGGCGACCGTCCTGGAGGGGG
GTTCGGTGGGATGGGGTCTGCTGGGGGAAGCTGTGGCGCCGGGCTTCGAC
TACAGGGACATGACGTTTGGGAACGAGGACGACATGGCCAAAGAGTACCC
GAAACTGGTGGAGAAGCTTCGGCCTTTTTTCAAGCCCAAAAAGGTGGGAG
AGTAGGGAAAGGATGCGAACACGTgataggggagggagtgacaGGTGATG
TCGCTGCGGTTGCTTGTTCGTTCTTTTGGGGCCGGTAGGTCCTCTtgcaa
ggaaaggaatgacGTGGACAACGGGGCGGCTATGCTAAATCGACGTGAGT
ACGGTACACTAAAGATGTAGTGGGAAAGTCGGGAATTCGGCGCTTTAAGA
ACAGCTAGTGATTTCTTCGGTCACCCCCCCACACATTTGATGCACAAGAC
AAAAATCAAGCTTTGGAATAATAGGAAATAGGCGGCTTGTATGCGGAAAG
GGTCGAGCCTCGGTCATATTTTGTTTTTCTCGTTCAAACAAATGCGCTTT
ACCGCCTGTGTCCACGTG back to topCoding sequence (CDS) from alignment at KK037250.1:594367..598134+ >rna8966 ID=rna8966|Name=rna8966|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at KK037250.1:594367..598134+ (Nannochloropsis gaditana)
ATGCCCGTACCTTTCTTGCACTCCTTCCCATCTATGCCTCGGAATCCATC
GCACGCGCTTCTGAAGCCCAGTTACtcagcttccctccttgtgtcTCTCA
CTCGCTCACAGAGATTCATGAACTCCCGCTTATTTGCTGTCAGCGCATGC
AGGAGAGCTGTGAGTGCTAGGCAGCGGCAGCCCACTTCAACAGTATCTCG
GATCGCCCTCCGCGGTTTAGCTTCGTCCAaacatcctccttcctctcctc
cccccccccaaggcaTGGGTGCCAACGGTCTGatcggcctccctccaaac
ccccgcccaccgccctcTCGCAAACCATCGCAGCCGACACCGACTCCCGC
AACTGCGCGCATGCCCTCTGTGATTGAAGTGGACGTTAAGAACTTCGTGG
CCTTGCTCAAGTCCCCTGTCCCCGTCATCCTCGATTGCTACGCAAGCTGG
TGCGACCCGTGCAAAAAACTGACGCCCGTGCTTGAACGCATCGTCGGCAA
GTACCCGGGGAGGCTAATATTGGCCAAGCTCGACGTGGACAACCACCAGG
AGCTGGCGGCTCAATTGAACGTGAgctccctcccagccgtCTTCGGCCTG
TGCGAAGGGAAACTTGTGGACCGATTCGTGGGGATGCCCACCGAGCCAGT
GCTGGCTGGGTTCTTGGACAAAATGCTCTCGATCATCCCGACCTCctcgg
ggcaggaagggaagggcgagcCATCCCCGGCGGAGAAACAGGAGGCGGTG
TTGAAGCGGGCGGATGCGCTGCTGACCGAGGggacaaaggaggggggaag
cggggagaCGGCGACAGAGGCAGGCGCACTCTACCGCCAAGTGTACGAAG
agctggggaaggaggatacGCCGGCCACCTATCTGCAAGCGAGGTGCCTG
GCAGGGTTGGCGCGGTGTGCattgcggggaggggcgagggaggaggccaa
ggagtTGGTGGGCATGCTCAAGAGGCAGCACAAGGCGGATATGGAGACGA
TGCCggtaaggaagagggggaggaagtgggggagggagggctgggtgGGA
AGGAATCTTTGCGGGAATCATTCAAGGCAGCCCCTGCCCCGCAGGAGGTC
CGGGCGGCCGTCTCCTTCGTCGAAGTGGCCTTAG back to top
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