EWM21740.1, cds8936 (CDS) Nannochloropsis gaditana

Overview
NameEWM21740.1
Unique Namecds8936
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:594661..595794 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21740.1
Productthioredoxin
Orig transcript idgnl|cribi|Naga_100270g7.5535.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:594661..595794 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
Homology
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|585102068|gb|EWM21739.1| (thioredoxin [Nannochloropsis gaditana] >gi|585102069|gb|EWM21740.1| thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 0
Query:    1 MPVPFLHSFPSMPRNPSHALLKPSYSASLLVSLTRSQRFMNSRLFAVSACRRAVSARQRQPTSTVSRIALRGLASSKHPPSSPPPPQGMGANGLIGLPPNPRPPPSRKPSQPTPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVRKRGRKWGREGWVGRNLCGNHSRQPLPRRRSGRPSPSSKWP 377
            MPVPFLHSFPSMPRNPSHALLKPSYSASLLVSLTRSQRFMNSRLFAVSACRRAVSARQRQPTSTVSRIALRGLASSKHPPSSPPPPQGMGANGLIGLPPNPRPPPSRKPSQPTPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVRKRGRKWGREGWVGRNLCGNHSRQPLPRRRSGRPSPSSKWP
Sbjct:    1 MPVPFLHSFPSMPRNPSHALLKPSYSASLLVSLTRSQRFMNSRLFAVSACRRAVSARQRQPTSTVSRIALRGLASSKHPPSSPPPPQGMGANGLIGLPPNPRPPPSRKPSQPTPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVRKRGRKWGREGWVGRNLCGNHSRQPLPRRRSGRPSPSSKWP 377          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|639280491|ref|WP_024583113.1| (MULTISPECIES: thioredoxin [Bradyrhizobium] >gi|758542513|gb|KIU50104.1| thioredoxin [Bradyrhizobium elkanii] >gi|1052228460|gb|OCX31364.1| thioredoxin [Bradyrhizobium sp. UASWS1016])

HSP 1 Score: 117.087 bits (292), Expect = 1.718e-26
Identity = 78/231 (33.77%), Postives = 119/231 (51.52%), Query Frame = 0
Query:  111 QPTPTPATARMPSVI-EVDVKNFVALLKSPV---PVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVR 337
            Q  PTP  A  P +I E   + FV  +       PV++D +A WC PC++LTP+LE+ V    GR+ L K+++D+H ++  Q+ + S+PAV     G+  D F+G   E  L  F+DK+   +P +      GEP+  E    +L  ADA+L EG  E  +            Q+Y E+   D  AT + A  LAGLA+C +  GA E+AK+ + M+    + D     V+
Sbjct:    6 QGGPTPQAA--PDLIKETTTQTFVKDVIEESRRQPVLIDFWAPWCGPCRQLTPMLEKAVRNAKGRVKLVKMNIDDHPQIPGQMGIQSIPAVIAFVNGQPADGFMGAVPESQLNAFIDKITKGVPAA------GEPNLTE----ILAEADAVLAEGDAEAAA------------QIYAEVLAHD--ATNIAA--LAGLAKCYMTSGAVEQAKQTLAMVPESKRNDAAVKAVQ 208          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|852217423|ref|WP_048307790.1| (co-chaperone YbbN [Halomonas sp. PR-M31])

HSP 1 Score: 116.316 bits (290), Expect = 3.391e-26
Identity = 82/249 (32.93%), Postives = 128/249 (51.41%), Query Frame = 0
Query:  100 NPR---PPPSRKPSQPTPTPATARMPSVIEVDVKNFVALL---KSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSI---IPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVRKR 339
            +PR   P  S + SQ T +  T     +I+VD+ NF  ++    + +PV+LDC+A WC+PCK LTP+LE++  +Y G  +LAKL+++ HQ++A+QL + S+P V  + +G+L D+F G   E  +  +L + +     IP           SP E+ EA L   D               AT A A+Y+Q+ +E  +      Y   +   GLA   L  G+ EEAK L+  L  +H+   +   VR R
Sbjct:    5 DPRSGVPLTSSESSQQTGSSNTDPSTYIIDVDMTNFQQVVLEGSTTLPVLLDCWAPWCEPCKTLTPILEKLAKEYAGAFVLAKLNIEEHQQIASQLGIRSVPDVKLISQGQLYDQFQGALPEKQIREWLAQYIEAPQEIPA----------SPEEQAEAALAVGD---------------ATSARAIYQQLVQEYPE------YHDYQI--GLASAVLAEGSPEEAKTLLDNLPPEHREGAKARGVRAR 220          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|1089507910|emb|SED62334.1| (thioredoxin [Bradyrhizobium erythrophlei])

HSP 1 Score: 116.316 bits (290), Expect = 3.692e-26
Identity = 78/231 (33.77%), Postives = 120/231 (51.95%), Query Frame = 0
Query:  111 QPTPTPATARMPSVI-EVDVKNFVALLKSPV---PVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVR 337
            Q  PTP  A  P +I E   + FV  +       PV++D +A WC PC++LTP+LE+ V    GR+ L K+++D H ++  Q+ + S+PAV     G+  D F+G   E  +  F++K+   +P +      GEP+ AE    +L  ADA+L EG  EG +            Q+Y E+   D  AT + A  LAGLA+C +  GA E+AK+ + M+    + D     V+
Sbjct:    6 QGGPTPEAA--PDLIKETTTQTFVKDVIEESRRQPVMIDFWAPWCGPCRQLTPMLEKAVRNAKGRVKLVKMNIDEHPQIPGQMGIQSIPAVIAFVNGQPADGFMGAVPESQINAFIEKITKGVPAA------GEPNLAE----ILAEADAVLAEGDVEGAA------------QIYAEVLAHD--ATNIAA--LAGLAKCYVTSGAVEQAKQTLAMVPESKRNDAAVKAVQ 208          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|656042233|ref|WP_029080927.1| (thioredoxin [Bradyrhizobium sp. th.b2])

HSP 1 Score: 116.316 bits (290), Expect = 3.692e-26
Identity = 78/231 (33.77%), Postives = 119/231 (51.52%), Query Frame = 0
Query:  111 QPTPTPATARMPSVI-EVDVKNFVALLKSPV---PVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVR 337
            Q  PTP  A  P +I E   + FV  +       PV++D +A WC PC++LTP+LE+ V    GR+ L K+++D H ++  Q+ + S+PAV     G+  D F+G   E  +  F+DK+   +P +      GEP+ AE    +L  ADA+L EG  E  +            Q+Y E+   D  AT + A  LAGLA+C +  GA E+AK+ + M+    + D     V+
Sbjct:    6 QGGPTPQAA--PDLIKETTTQTFVKDVIEESRRQPVMIDFWAPWCGPCRQLTPMLEKAVRNAKGRVKLVKMNIDEHPQIPGQMGIQSIPAVIAFVNGQPADGFMGAVPESQVNAFIDKITKGVPAA------GEPNLAE----ILAEADAVLAEGDAEAAA------------QIYAEVLAHD--ATNIAA--LAGLAKCYMTTGAVEQAKQTLAMVPESKRNDAAVKAVQ 208          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|1141026901|ref|WP_076863355.1| (thioredoxin [Bradyrhizobium mercantei])

HSP 1 Score: 114.005 bits (284), Expect = 2.631e-25
Identity = 78/231 (33.77%), Postives = 118/231 (51.08%), Query Frame = 0
Query:  111 QPTPTPATARMPSVI-EVDVKNFVALLKSPV---PVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVR 337
            Q  PTP  A  P +I E   + FV  +       PV++D +A WC PC++LTP+LE+ V    GR+ L K+++D H ++  Q+ + S+PAV     G+  D F+G   E  L  F++K+   +P +      GEP+ AE    +L  ADA+L EG              A   Q+Y E+   D  AT + A  LAGLA+C +  GA E+AK+ + M+    + D     V+
Sbjct:    6 QGGPTPQAA--PDLIKETTTQTFVKDVIEESRRQPVLIDFWAPWCGPCRQLTPMLEKAVNNAKGRVKLVKMNIDEHPQIPGQMGIQSIPAVIAFVNGQPADGFMGAVPESQLNAFIEKITKGVPAA------GEPNLAE----ILAEADAVLAEGD------------AAQAAQIYAEVLAHD--ATNIAA--LAGLAKCYVTSGAVEQAKQTLAMVPESKRNDAAVKAVQ 208          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|667763673|ref|WP_031384737.1| (co-chaperone YbbN [Halomonas zincidurans])

HSP 1 Score: 113.235 bits (282), Expect = 5.342e-25
Identity = 74/219 (33.79%), Postives = 119/219 (54.34%), Query Frame = 0
Query:  124 VIEVDVKNFVALL---KSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVRKR 339
            +++VD+ NF  ++      +PV+LDC+A WC+PCK LTPVLE++  +Y G  +LAKL+++++Q++AAQL + S+P V  + +G+L D+F G   E  +  +L + LS  P  +      E SP E+ EA L                G++AT      R +YE+L  +D P  +       GLA   +  G  +EA+ L+  L  +H+   +T  VR R
Sbjct:   30 IVDVDMSNFQQVVLEGSMQIPVVLDCWAPWCEPCKSLTPVLEKLAHEYAGSFVLAKLNIEDNQQIAAQLGIRSVPDVKLIMQGQLYDQFQGALPEKQIRDWLGQYLS-APQDA------EASPEEQAEAAL--------------ADGDSATA-----RAIYEQL-VQDYPDYH---DYQIGLASALVGEGRADEARALLDNLPPEHRDAAKTRGVRAR 218          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|505412869|ref|WP_015599971.1| (co-chaperone YbbN [Hyphomicrobium denitrificans] >gi|484583924|gb|AGK59957.1| thioredoxin [Hyphomicrobium denitrificans 1NES1])

HSP 1 Score: 112.849 bits (281), Expect = 5.882e-25
Identity = 72/216 (33.33%), Postives = 109/216 (50.46%), Query Frame = 0
Query:  108 KPSQPTPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGML 323
            K S P    A   +        K+ V       PVI+D +ASWC PCK+LTP++E++V  Y G++ LAK++VD +Q +AAQL V SLP V    +G+ +D FVG   E  +  F+D++++         G GE         +LK A+ LL +G  +G +            +V+  + +ED       A  LAGLA C LR G    AK+ + ++
Sbjct:    6 KKSGPGTAGAGDVIKDTTSASFKSDVIDASKSTPVIVDFWASWCGPCKQLTPLIEKVVRSYSGKVRLAKVNVDENQAIAAQLRVQSLPTVLAFRDGQPIDGFVGAQPEGAVKAFVDRLIA----DDADLGLGE---------LLKSAEDLLEQGDLQGAA------------EVFATVLQEDRS----NAEALAGLASCYLRSGDTTRAKQTLALV 192          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|654900826|ref|WP_028352287.1| (MULTISPECIES: thioredoxin [Bradyrhizobium])

HSP 1 Score: 112.849 bits (281), Expect = 6.764e-25
Identity = 77/231 (33.33%), Postives = 118/231 (51.08%), Query Frame = 0
Query:  111 QPTPTPATARMPSVI-EVDVKNFVALLKSPV---PVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVR 337
            Q  PTP  A  P +I E   + FV  +       PV++D +A WC PC++LTP+LE+ V    GR+ L K+++D H ++  Q+ + S+PAV     G+  D F+G   E  +  F++K+   +P +      GEP+ AE    +L  ADA+L EG              A   Q+Y E+   D  AT + A  LAGLA+C +  GA E+AK+ + M+    + D     V+
Sbjct:    6 QGGPTPEAA--PDLIKETTTQTFVKDVIEESRRQPVMIDFWAPWCGPCRQLTPILEKAVRNAKGRVKLVKMNIDEHPQIPGQMGIQSIPAVIAFVNGQPADGFMGAVPESQVNAFIEKITKGVPAA------GEPNLAE----ILAEADAVLAEGD------------AAQAAQIYAEVLAHD--ATNIAA--LAGLAKCYVTSGAMEQAKQTLAMVPESKRNDAAVKAVQ 208          
BLAST of EWM21740.1 vs. NCBI_GenBank
Match: gi|1027763893|ref|WP_063695699.1| (thioredoxin [Bradyrhizobium embrapense])

HSP 1 Score: 112.849 bits (281), Expect = 7.563e-25
Identity = 74/231 (32.03%), Postives = 116/231 (50.22%), Query Frame = 0
Query:  111 QPTPTPATARMPSVI-EVDVKNFVALLKSPV---PVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAVLKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETMPVR 337
            Q  PTP  A  P +I E   + FV  +       PV++D +A WC PC++LTP+LE+ V    GR+ L K+++D H ++  Q+ + S+PAV     G+  D F+G   E  +  F++K+   +P +      GEP+ AE    +L  ADA+L EG  EG +            Q+Y E+   D     +    LAGLA+C +  GA E+AK+ +  +    + D     V+
Sbjct:    6 QGGPTPQAA--PDLIKETTTQTFVKDVIEESRRQPVMIDFWAPWCGPCRQLTPMLEKAVRNAKGRVKLVKMNIDEHPQIPGQMGIQSIPAVIAFVNGQPADGFMGAVPESQINAFIEKITKGVPAA------GEPNLAE----ILAEADAVLAEGDVEGAA------------QIYAEVLAHDA----INIAALAGLAKCYVTSGAVEQAKQTLATVPEAKRNDAAVKAVQ 208          
The following BLAST results are available for this feature:
BLAST of EWM21740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102068|gb|EWM21739.1|0.000e+0100.00thioredoxin [Nannochloropsis gaditana] >gi|5851020... [more]
gi|639280491|ref|WP_024583113.1|1.718e-2633.77MULTISPECIES: thioredoxin [Bradyrhizobium] >gi|758... [more]
gi|852217423|ref|WP_048307790.1|3.391e-2632.93co-chaperone YbbN [Halomonas sp. PR-M31][more]
gi|1089507910|emb|SED62334.1|3.692e-2633.77thioredoxin [Bradyrhizobium erythrophlei][more]
gi|656042233|ref|WP_029080927.1|3.692e-2633.77thioredoxin [Bradyrhizobium sp. th.b2][more]
gi|1141026901|ref|WP_076863355.1|2.631e-2533.77thioredoxin [Bradyrhizobium mercantei][more]
gi|667763673|ref|WP_031384737.1|5.342e-2533.79co-chaperone YbbN [Halomonas zincidurans][more]
gi|505412869|ref|WP_015599971.1|5.882e-2533.33co-chaperone YbbN [Hyphomicrobium denitrificans] >... [more]
gi|654900826|ref|WP_028352287.1|6.764e-2533.33MULTISPECIES: thioredoxin [Bradyrhizobium][more]
gi|1027763893|ref|WP_063695699.1|7.563e-2532.03thioredoxin [Bradyrhizobium embrapense][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8966rna8966Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications