rna8958, rna8958 (mRNA) Nannochloropsis gaditana

Overview
Namerna8958
Unique Namerna8958
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length540
Alignment locationKK037250.1:576743..578034 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100303g7.774.mrna
Orig protein idgnl|cribi|Naga_100303g7.774
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:576743..578034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100303g7gene8685Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8958rna8958-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21745.1cds8928Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8958 ID=rna8958|Name=rna8958|organism=Nannochloropsis gaditana|type=mRNA|length=540bp
ATGACAAGAGTTGTCTCGAGGATGATGGAAATGCTATTCGCCTCCCTATC
AGCTTCTCGCTCAAAACCGCCCCCCCCTCTTTCAGAGGTCGTCGCAACCC
TTAGAGTAAGTGCGATTGATGTTGTGCTAGATGTCGCATCATCGCGGCGG
TATGATCGTGACCTGTCTTCCCGCTTGAAAGTGGGAGGTTTGAGGGGATT
CCTGCCTGAGCAGAACGCGCGTCTTGTATTCCTGCATCATCTTTCTTTCA
ATGTCGTGTTCGATTTCCGCCGCGGGGGTGGGGGCTGCAAGCACCGTACT
GCTGCGTGTTGGCGTGAGGCGGAGGGAAAAATCAGAAGATTAAGAAACTT
TCAGATGACGAGTCCGACGGTCGCCTTGGTTGTCGTCGACTTGACGGTCC
ATGTCCTCTGGAGTGTGCCTGCCGGGACGGCGCTCTGGGCGTTTTGCGCA
TGGCGCCAGTCCTGGTGCCTCTCAAGCTTAAGGAGGCATGGGCCGGGTCG
ATGCGTGGCCGGCTGGGGAACAATCGAGGCATTTGTATGA
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protein sequence of rna8958

>rna8958-protein ID=rna8958-protein|Name=rna8958|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MGKAYQSLSASWQFLAALVLFLLAHGNCDARAPAQDLGGETDALNLVNHL
ALRRRLVTASEVLSEGQGYNPNLDNQSYYEPLPPSSQEQYQQRAQHRSST
EAHSDDENAINLRSGGVRM
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mRNA from alignment at KK037250.1:576743..578034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8958 ID=rna8958|Name=rna8958|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp|location=Sequence derived from alignment at KK037250.1:576743..578034- (Nannochloropsis gaditana)
CGGGAAGATTCACGCCGCATTGTTCTCACGGACCCATTCTTCCAGCATAC
CCGCAGATCCGTATGGGCAAAGCCTACCAGTCCTTGTCCGCGTCGTGGCA
GTTTTTAGCCGCCTTGGTTCTATTCCTTCTCGCACATGGCAACTGTGACG
CCCGCGCCCCCGCGCAAGACTTGGGAGGAGAGACAGATGCGCTCAACCTC
GTAAATCACCTCGCCTTGGTAAGTGATTGGTTTGGTGTGATGCGTGTCTA
ATTTGACGTCACTATCAAATAGAAGTGCGACTTGAGCTTGCACGGATGGA
TAGTGTGCTGAGGCCGGATGCGCTGTAATCGGCCCAGGTTTTGGGGAAAT
CTTCGTACATAGTGCTACCCTCTCAAAGCAGATGGTCATTCCAGACTCGA
GGCCCCTCGTTAATTCCTTTCAAGGTGTGCATACTGACCATTTCGTGTGA
ACGCACTTTCTGACGCATACACTCTCCAGCGGCGCCGACTTGTGACGGCG
TCGGAGGTCCTCTCGGAAGGACAAGGGTACAACCCCAACCTGGACAATCA
ATCCTACTACGAGCCCCTGCCCCCCTCGTCTCAAGAGCAGTACCAGCAGC
GGGCACAGCACCGTTCAAGCGTAAGTAGATGTATAGCAAGGTCTTCTGCA
GACCTGTTAGTGTCACGGAAGGGAGTCTTCAGACTCGTCGAGGGAGCACA
GAGAAATTGGTTTCCGTCCGCATGAGGGCTTCCGGATCTAAAGCTCTTTT
TCTTTCCTGCGTCCAACATTGACAGACGGAGGCCCACAGCGATGATGAAA
ACGCCATTAATTTGCGCAGCGGGGGTGTACGGATGTAAACACATGCCAGC
GTGCTGATGGCTCCGTGCATCTACCCAAGCCGCTCGTTGCTCCTCGATGA
GAGGGAATGCTTGAGAGGGCGAATGGCGCAGGCGCGAAGGATCTATGTTG
GAAGATGACTGGGCTTTGAAGACGTCTTTTGATGTAAATATGCCAGTAGA
AGTGCACGGCATTGTAGTACCAAGAAACGAATTTGTGGGGTGAGGCCCCT
GGAGGCAAAGGGTAGATCGCCAAGGCGAAGATGGCCTGGCCCCTCTGTAC
ATGTGGAAATTGACATAGCTAATGAAACAAGTAAGCGAATGCGTGGATCG
GGCAGACATTGCATTGAGGTCCAGTAACAGCTCCCCGTCATCGAATTAAC
CCGAACGAATCCAGGCGACATAATCCGGCCGTGACGGTCAAAGGAAAGGA
ACAGGAAAAGGTGCAGAAAGCACGTTGGAGACCACGTGTTGG
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Coding sequence (CDS) from alignment at KK037250.1:576743..578034-

>rna8958 ID=rna8958|Name=rna8958|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at KK037250.1:576743..578034- (Nannochloropsis gaditana)
ACGGAGGCCCACAGCGATGATGAAAACGCCATTAATTTGCGCAGCGGGGG
TGTACGGATGTAACGGCGCCGACTTGTGACGGCGTCGGAGGTCCTCTCGG
AAGGACAAGGGTACAACCCCAACCTGGACAATCAATCCTACTACGAGCCC
CTGCCCCCCTCGTCTCAAGAGCAGTACCAGCAGCGGGCACAGCACCGTTC
AAGCATGGGCAAAGCCTACCAGTCCTTGTCCGCGTCGTGGCAGTTTTTAG
CCGCCTTGGTTCTATTCCTTCTCGCACATGGCAACTGTGACGCCCGCGCC
CCCGCGCAAGACTTGGGAGGAGAGACAGATGCGCTCAACCTCGTAAATCA
CCTCGCCTTGACGGAGGCCCACAGCGATGATGAAAACGCCATTAATTTGC
GCAGCGGGGGTGTACGGATGTAACGGCGCCGACTTGTGACGGCGTCGGAG
GTCCTCTCGGAAGGACAAGGGTACAACCCCAACCTGGACAATCAATCCTA
CTACGAGCCCCTGCCCCCCTCGTCTCAAGAGCAGTACCAGCAGCGGGCAC
AGCACCGTTCAAGCATGGGCAAAGCCTACCAGTCCTTGTCCGCGTCGTGG
CAGTTTTTAGCCGCCTTGGTTCTATTCCTTCTCGCACATGGCAACTGTGA
CGCCCGCGCCCCCGCGCAAGACTTGGGAGGAGAGACAGATGCGCTCAACC
TCGTAAATCACCTCGCCTTGACGGAGGCCCACAGCGATGATGAAAACGCC
ATTAATTTGCGCAGCGGGGGTGTACGGATGTAACGGCGCCGACTTGTGAC
GGCGTCGGAGGTCCTCTCGGAAGGACAAGGGTACAACCCCAACCTGGACA
ATCAATCCTACTACGAGCCCCTGCCCCCCTCGTCTCAAGAGCAGTACCAG
CAGCGGGCACAGCACCGTTCAAGCATGGGCAAAGCCTACCAGTCCTTGTC
CGCGTCGTGGCAGTTTTTAGCCGCCTTGGTTCTATTCCTTCTCGCACATG
GCAACTGTGACGCCCGCGCCCCCGCGCAAGACTTGGGAGGAGAGACAGAT
GCGCTCAACCTCGTAAATCACCTCGCCTTG
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Synonyms
Publications