rna8955, rna8955 (mRNA) Nannochloropsis gaditana

Overview
Namerna8955
Unique Namerna8955
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1255
Alignment locationKK037250.1:568427..570095 -

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Properties
Property NameValue
Product60s ribosomal protein l26
Orig transcript idgnl|cribi|Naga_100303g2.778.mrna
Orig protein idgnl|cribi|Naga_100303g2.778
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:568427..570095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100303g2gene8682Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8955rna8955-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21749.1cds8925Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8955 ID=rna8955|Name=rna8955|organism=Nannochloropsis gaditana|type=mRNA|length=1255bp
ATGATCGCCGAGTTGGAGGCGCCCCCCATCTCTTCCCGCCTCCCTCCTTC
CAGAAGCTCCCCGTCTTCCTCCGACGACGGCGGCACACCGGCCCGAACCT
CCTCCTCGTCCTCCCCTGCCCGCCCTTTCCCTGCCGCCGCGGCCCCCCGG
TCCACCCCTCCCCTTCCCCCTCGTCCCCTTCCTCCACCACCATTCTCCTC
CTCAGCCCGTTTCCCCTCCTCGACCGTCCCGACCTCCCCCCCCCTTTCCT
CCACGACCCTTCCCCCCACTGCCGCCATGCCCGCTTCCAACCGCGGGCAC
CTCCGAAGTTCTTCCCCTCCCTTTTCCCCTCCTGCCTCCTCCCCTCCTTC
CTCCTCTGCCCGGACGCGCCCTCTTTCAACCTCACTCCCGTCGGAATCAG
GGCCGGCGAACGGAAGCCTCCTTCCTTCCTCCTCCTCCAACTCTCGAACC
TCCCCCTCTTCCAACGGTCTACGAGGAGGAGGAAATGACACGTCCACGCC
CGCATCGCAAGTCTCTGCGAACTTGCGGGTGATCGGCCTGGAAGGGCGCC
AAAAGCTGGCTTTGAAAGAAAAGAGGATCGGGGAGGTGGATGAGCAAGGG
GGAAAGAAGAGGGCAGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGTGGT
AGTGTTGGGAACAGTCAGGGTCCGCCGTGGAGGGCAAAAGGGTGGGCAGG
CGAGCGGGACAAGGATGAGGAGAGGAAGAGGGGGAGGTACCGGGGGAGGG
GAGGAAGGAGTACGGGGAGCAGGAGGGAAAGAGGGGCTGGCGGGGGGAGG
AAGTCGTGATGGAAGCCCTTCCTCAATCCGGGGTGCTGGCGGGAGGGGGA
GGCAGAAGGAGGGGCGTGGTTCTGCTCGGCTCGGTCGGGATGAAGGTGGA
GGTGATGAGTGTAGAGGCACCTCGAGGGGGAGGTCCCGGAAAGAGAAGGA
GAGGAAGGAGGAAGGAGGTAGGGGGGGGGGGGGGAGGGACCTCAAGGTGT
TTGATTTCGATGGATAGGAGGGCGGAAAGAAGCCTCAAGAAGGTGCGTGA
GGCAGAGCTTGCGAGGGACGATTGATCGATGAGGACAGGGGGGGCTGGTG
CCGAGGGACGCAAGAGTCGGTGGCGCGGGACGTAAGCGTCTCAGAACGAG
CACGGAAAGAGGGAGGGGAAGAACAGGACATCGTGAAAGCCTGCCCTTCA
GCATGTGAATAACATACAACCTGCGATCAAAGAAAGCAAAAATGATCCAC
AACCC
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protein sequence of rna8955

>rna8955-protein ID=rna8955-protein|Name=rna8955|organism=Nannochloropsis gaditana|type=polypeptide|length=258bp
MPVSATVLVYQVQLRMCANGMPLLSQRLVSSINLSPPLNEVRLKMGRRSL
VLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARR
RTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAG
DHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSV
RITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTL
TSILDGSA
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mRNA from alignment at KK037250.1:568427..570095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8955 ID=rna8955|Name=rna8955|organism=Nannochloropsis gaditana|type=mRNA|length=1669bp|location=Sequence derived from alignment at KK037250.1:568427..570095- (Nannochloropsis gaditana)
CAGGCTTTTGGGATCTCCTTCGGTCCGAATCACCTGCCTGGGCCCGATCG
CATGCCTGGATAGTCATATGAGGATGTGCATGCTTTTTGCTGTTGAGATC
AGAGGGGAGCCACTCTTCTCGAGTACCGTTGAGGACGAATTTGGAGGTGG
CCATTCATCCCACCTCCGAGCTAGCCAAGCCGGCCCTGGTCGCCTTGCCC
CCCTTTCAAGTCAGACATGGCCTTCTTGTCTCATATAAATCCGACAACCA
GAGGATAATATCACAATTTGGAGGCATTGCACGTCTAGATGTGTCAAGTG
TCGATGCGGAGGGCGGCGTTAGCCTGGGGTCTATGCCTGTGTCTGCGACC
GTTCTTGTGTATCAAGTTCAGCTACGCATGTGCGCTAATGGCATGCCACT
CCTCTCTCAACGTCTTGTCTCATCTATAAATCTTTCCCCCCCACTGAATG
AAGTGCGTTTAAAAATGGGACGACGATCCCTTGTCCTCGTTACCGTGGCG
GCCATATGTGCGGGTCTTTGTACTGCCTTCGTCCCCTCCGCGCCTCTACC
CAGCTGCGCCTCGGGCTCGAGCACTAGCAGACGTCAGACGATTGTGGTAA
GTGAATCAAAGTACAACAACGACTCTGCATCAGAGTACGGCAAACATAGA
TATGTACAGCAAATACAGATATGTCTTTACAGATGGTAGAAAGGGATTTG
GGCGATTCAAGGTGCACACATGCGTTATGTCAAGGTCGCGGCAAATTGGT
TTAGCGCGGCTCACCGTGCCCGTATTGAAATGTCTGTCGGGTGGGAAGAG
CGACGCACAAGACTTGACACAAGACGATAAATCTCACAATCTTTTTTTGC
ACTTTTTTGTGGCAGATGGGGAATCATCGCTCCTCCCAAGCCGCACGCCG
GCGCACCTCCTTTCTGAAGCACGTGAAGGCCCCCTTACACAAACGTCGCA
CCATCATGAGCTCTCCTCTGAGCAAAGAACTCCGGGCAGAGCACGGCGGG
GTGCGATCCATTCCCGTCCGCACGGGGGATGAAGTGGTGGTGACGGCGGG
CGACCACCGAAAGAAAGTAGGCAAGGTGATTGGCGTGGACCGGAAGAAGT
ACTACATCCACGTGGAAGGGATCACGCGCGAGAAGGCGGGGGGGAAAGAA
GCGGGTAAGACAAGCACGACAATCCCCGTGCCCATCCGCGCTTCCAGCGT
CAGGATCACCAAGCTGTACCTGGATAAATCCCGGGAAGCCATCTTGAAAC
GCCGGGCGGAGGGGCGGGCCGAGCTTGCCGCACGGAAGAACAACATCCAG
CTTGCGGAGCCCGGGCAGGACCCGGCCTGGGCGGAGTACCAGACCACCTT
AACTTCTATATTGGATGGATCCGCGTAGGGCGGGGAAAAGGAGGAGGAAA
CGGGCTGCGGGGTAGAGTGGGAAGGAGGGCGAGGTGGGGGGGTTGGAAGG
GAGGACCCTGTCCTCGGTCGCGCCTTCATTTCCTCTTCGTCCTCCTCTGA
CCGGTTTTTCCCCGCAGCGTGGGTGTTTCTCGTACCGGCCTCGATTCTGC
CCCGTTTCGAGGGCAGAGCGGAGGGGTCGGGGGGAAGGCGGGGGACGAGG
GCGAGGAGGGGCAAGGAGGGAATAGGAGGGAAGAAAGTGAAAAAGAAGGA
GTTGAAGTCAGCGGGTTGT
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Coding sequence (CDS) from alignment at KK037250.1:568427..570095-

>rna8955 ID=rna8955|Name=rna8955|organism=Nannochloropsis gaditana|type=CDS|length=1554bp|location=Sequence derived from alignment at KK037250.1:568427..570095- (Nannochloropsis gaditana)
ATGGGGAATCATCGCTCCTCCCAAGCCGCACGCCGGCGCACCTCCTTTCT
GAAGCACGTGAAGGCCCCCTTACACAAACGTCGCACCATCATGAGCTCTC
CTCTGAGCAAAGAACTCCGGGCAGAGCACGGCGGGGTGCGATCCATTCCC
GTCCGCACGGGGGATGAAGTGGTGGTGACGGCGGGCGACCACCGAAAGAA
AGTAGGCAAGGTGATTGGCGTGGACCGGAAGAAGTACTACATCCACGTGG
AAGGGATCACGCGCGAGAAGGCGGGGGGGAAAGAAGCGGGTAAGACAAGC
ACGACAATCCCCGTGCCCATCCGCGCTTCCAGCGTCAGGATCACCAAGCT
GTACCTGGATAAATCCCGGGAAGCCATCTTGAAACGCCGGGCGGAGGGGC
GGGCCGAGCTTGCCGCACGGAAGAACAACATCCAGCTTGCGGAGCCCGGG
CAGGACCCGGCCTGGGCGGAGTACCAGACCACCTTAACTTCTATATTGGA
TGGATCCGCGTAGATGCCTGTGTCTGCGACCGTTCTTGTGTATCAAGTTC
AGCTACGCATGTGCGCTAATGGCATGCCACTCCTCTCTCAACGTCTTGTC
TCATCTATAAATCTTTCCCCCCCACTGAATGAAGTGCGTTTAAAAATGGG
ACGACGATCCCTTGTCCTCGTTACCGTGGCGGCCATATGTGCGGGTCTTT
GTACTGCCTTCGTCCCCTCCGCGCCTCTACCCAGCTGCGCCTCGGGCTCG
AGCACTAGCAGACGTCAGACGATTGTGATGGGGAATCATCGCTCCTCCCA
AGCCGCACGCCGGCGCACCTCCTTTCTGAAGCACGTGAAGGCCCCCTTAC
ACAAACGTCGCACCATCATGAGCTCTCCTCTGAGCAAAGAACTCCGGGCA
GAGCACGGCGGGGTGCGATCCATTCCCGTCCGCACGGGGGATGAAGTGGT
GGTGACGGCGGGCGACCACCGAAAGAAAGTAGGCAAGGTGATTGGCGTGG
ACCGGAAGAAGTACTACATCCACGTGGAAGGGATCACGCGCGAGAAGGCG
GGGGGGAAAGAAGCGGGTAAGACAAGCACGACAATCCCCGTGCCCATCCG
CGCTTCCAGCGTCAGGATCACCAAGCTGTACCTGGATAAATCCCGGGAAG
CCATCTTGAAACGCCGGGCGGAGGGGCGGGCCGAGCTTGCCGCACGGAAG
AACAACATCCAGCTTGCGGAGCCCGGGCAGGACCCGGCCTGGGCGGAGTA
CCAGACCACCTTAACTTCTATATTGGATGGATCCGCGTAGATGCCTGTGT
CTGCGACCGTTCTTGTGTATCAAGTTCAGCTACGCATGTGCGCTAATGGC
ATGCCACTCCTCTCTCAACGTCTTGTCTCATCTATAAATCTTTCCCCCCC
ACTGAATGAAGTGCGTTTAAAAATGGGACGACGATCCCTTGTCCTCGTTA
CCGTGGCGGCCATATGTGCGGGTCTTTGTACTGCCTTCGTCCCCTCCGCG
CCTCTACCCAGCTGCGCCTCGGGCTCGAGCACTAGCAGACGTCAGACGAT
TGTG
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Synonyms
Publications