EWM21749.1, cds8925 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|585102080|gb|EWM21749.1| (60s ribosomal protein l26 [Nannochloropsis gaditana]) HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query: 1 MPVSATVLVYQVQLRMCANGMPLLSQRLVSSINLSPPLNEVRLKMGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 258
MPVSATVLVYQVQLRMCANGMPLLSQRLVSSINLSPPLNEVRLKMGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA
Sbjct: 1 MPVSATVLVYQVQLRMCANGMPLLSQRLVSSINLSPPLNEVRLKMGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 258
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|553183025|ref|XP_005853828.1| (large subunit ribosomal protein L26e [Nannochloropsis gaditana CCMP526] >gi|422295232|gb|EKU22531.1| large subunit ribosomal protein L26e [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 433.721 bits (1114), Expect = 5.352e-153 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query: 45 MGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 258
MGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA
Sbjct: 1 MGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 214
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|1183518073|gb|ORZ41287.1| (translation protein SH3-like domain-containing protein, partial [Catenaria anguillulae PL171]) HSP 1 Score: 119.398 bits (298), Expect = 1.541e-30 Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 0
Query: 100 RRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRA 223
RR S H AP H RR IMS+PL+KELR +H VRS+P+R DEV+V G+ + + GKV+ V RKKY IH+E ITR+K G T++PV I S+V ITKL+LDK R+A+L+R+A G+A
Sbjct: 6 RRKSRKAHFTAPSHVRRVIMSAPLAKELREKHN-VRSMPIRKDDEVLVVRGNFKSQTGKVVQVYRKKYVIHIERITRDKVNG-------TSVPVGIHPSNVVITKLHLDKDRKALLERKAAGKA 121
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|636598099|ref|XP_008030388.1| (hypothetical protein SETTUDRAFT_97180 [Setosphaeria turcica Et28A] >gi|482804960|gb|EOA82059.1| hypothetical protein SETTUDRAFT_97180 [Setosphaeria turcica Et28A]) HSP 1 Score: 119.398 bits (298), Expect = 2.762e-30 Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 0
Query: 97 AARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
A+ RR S H AP RR IMS+PLSKELR +HG VRSIP+R DE+ V G ++ + GKV V R KY IHV GI REK+ G+ ++P+PI AS V ITKL LDK RE+IL+R++ GR E
Sbjct: 9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCIHVNGIVREKSNGQ-------SVPIPIAASKVVITKLKLDKDRESILERKSAGREE 128
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|627831809|ref|XP_007687056.1| (hypothetical protein COCMIDRAFT_92753 [Bipolaris oryzae ATCC 44560] >gi|576932900|gb|EUC46434.1| hypothetical protein COCMIDRAFT_92753 [Bipolaris oryzae ATCC 44560]) HSP 1 Score: 119.013 bits (297), Expect = 3.210e-30 Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 0
Query: 97 AARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
A+ RR S H AP RR IMS+PLSKELR +HG VRSIP+R DE+ V G ++ + GKV V R KY IHV GI REK+ G+ ++P+PI AS V ITKL LDK RE+IL+R++ GR E
Sbjct: 9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCIHVNGIVREKSNGQ-------SVPIPIAASKVVITKLKLDKDRESILERKSAGREE 128
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|396462926|ref|XP_003836074.1| (similar to 60S ribosomal protein L26 [Leptosphaeria maculans JN3] >gi|312212626|emb|CBX92709.1| similar to 60S ribosomal protein L26 [Leptosphaeria maculans JN3]) HSP 1 Score: 117.472 bits (293), Expect = 1.408e-29 Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 0
Query: 89 MGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAAR 228
M ++ A+ RR S H AP RR IMS+PLSKELR +HG VRSIPVR DE++V G ++ + GK+ V R KY +HV GI REK+ G+ ++P+PI S V ITKL LDK RE IL+R++ GRAE R
Sbjct: 1 MAKVQAQLASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPVRKDDEIMVVRGSNKGREGKIQSVYRLKYCLHVAGIVREKSNGQ-------SVPIPIAPSKVVITKLKLDKDREQILERKSAGRAEKKKR 132
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|1028896488|gb|OAK98745.1| (ribosomal protein L24 [Stagonospora sp. SRC1lsM3a]) HSP 1 Score: 117.087 bits (292), Expect = 1.867e-29 Identity = 67/142 (47.18%), Postives = 89/142 (62.68%), Query Frame = 0
Query: 89 MGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKN 230
M +S A+ RR S H AP RR IMS+PLSKELR +HG VRSIPVR DE++V G ++ + GK+ V R KY IHV GI REK+ G+ ++P+P+ S V +TKL LDK RE IL+R+ GR E +++
Sbjct: 1 MAKVQSMVASSRRKSRKAHFSAPSSARRVIMSAPLSKELREKHG-VRSIPVRKDDEIMVVRGSNKGREGKITSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREQILERKKNGREEKKSKQQ 134
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|169607701|ref|XP_001797270.1| (hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15] >gi|111064440|gb|EAT85560.1| hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15]) HSP 1 Score: 116.701 bits (291), Expect = 2.160e-29 Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = 0
Query: 93 RSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
RS A+ RR S H AP RR IMS+PLSKELR +HG VRSIP+R DE++V G ++ + GKV V R KY IHV GI REK+ G+ ++P+P+ S V +TKL LDK RE IL+R++ GR E
Sbjct: 3 RSIVASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEIMVVRGSNKGREGKVTSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREKILERKSNGREE 126
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|628214452|ref|XP_007713820.1| (hypothetical protein COCCADRAFT_100136 [Bipolaris zeicola 26-R-13] >gi|953434679|ref|XP_014559411.1| hypothetical protein COCVIDRAFT_35447 [Bipolaris victoriae FI3] >gi|576917651|gb|EUC31867.1| hypothetical protein COCCADRAFT_100136 [Bipolaris zeicola 26-R-13] >gi|578492423|gb|EUN29823.1| hypothetical protein COCVIDRAFT_35447 [Bipolaris victoriae FI3]) HSP 1 Score: 117.087 bits (292), Expect = 2.193e-29 Identity = 67/128 (52.34%), Postives = 84/128 (65.62%), Query Frame = 0
Query: 97 AARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
A+ RR S H AP RR IMS+PLSKELR +HG VRSIP+R DE+ V G ++ + GKV V R KY IHV GI REK+ G+ ++P+PI S V ITKL LDK RE+IL+R++ GR E
Sbjct: 9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCIHVNGIVREKSNGQ-------SVPIPIAPSKVVITKLKLDKDRESILERKSAGREE 128
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|1020701190|gb|KZM21807.1| (structural constituent of ribosome [Ascochyta rabiei]) HSP 1 Score: 116.316 bits (290), Expect = 3.401e-29 Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 0
Query: 100 RRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRA 223
RR S H AP RR IMS+PLSKELR +HG VRSIP+R DE+ V G ++ + GKV V R KY IHV GI REK+ G+ ++PVPI S V ITKL LDK RE IL+R++ GRA
Sbjct: 9 RRNSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVNSVYRLKYCIHVNGIVREKSNGQ-------SVPVPIAPSKVVITKLKLDKDREQILERKSAGRA 124 The following BLAST results are available for this feature:
BLAST of EWM21749.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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