EWM21749.1, cds8925 (CDS) Nannochloropsis gaditana

Overview
NameEWM21749.1
Unique Namecds8925
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:569500..569763 -
Alignment locationKK037250.1:568718..569230 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21749.1
Product60s ribosomal protein l26
Orig transcript idgnl|cribi|Naga_100303g2.778.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:569500..569763 -
KK037250.1supercontigKK037250.1:568718..569230 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0016020membrane
GO:0015934large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR005756Ribosomal_L26/L24P_euk/arc
IPR014722Rib_L2_dom2
IPR005824KOW
Homology
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|585102080|gb|EWM21749.1| (60s ribosomal protein l26 [Nannochloropsis gaditana])

HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MPVSATVLVYQVQLRMCANGMPLLSQRLVSSINLSPPLNEVRLKMGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 258
            MPVSATVLVYQVQLRMCANGMPLLSQRLVSSINLSPPLNEVRLKMGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA
Sbjct:    1 MPVSATVLVYQVQLRMCANGMPLLSQRLVSSINLSPPLNEVRLKMGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 258          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|553183025|ref|XP_005853828.1| (large subunit ribosomal protein L26e [Nannochloropsis gaditana CCMP526] >gi|422295232|gb|EKU22531.1| large subunit ribosomal protein L26e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 433.721 bits (1114), Expect = 5.352e-153
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:   45 MGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 258
            MGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA
Sbjct:    1 MGRRSLVLVTVAAICAGLCTAFVPSAPLPSCASGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 214          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|1183518073|gb|ORZ41287.1| (translation protein SH3-like domain-containing protein, partial [Catenaria anguillulae PL171])

HSP 1 Score: 119.398 bits (298), Expect = 1.541e-30
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 0
Query:  100 RRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRA 223
            RR S   H  AP H RR IMS+PL+KELR +H  VRS+P+R  DEV+V  G+ + + GKV+ V RKKY IH+E ITR+K  G       T++PV I  S+V ITKL+LDK R+A+L+R+A G+A
Sbjct:    6 RRKSRKAHFTAPSHVRRVIMSAPLAKELREKHN-VRSMPIRKDDEVLVVRGNFKSQTGKVVQVYRKKYVIHIERITRDKVNG-------TSVPVGIHPSNVVITKLHLDKDRKALLERKAAGKA 121          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|636598099|ref|XP_008030388.1| (hypothetical protein SETTUDRAFT_97180 [Setosphaeria turcica Et28A] >gi|482804960|gb|EOA82059.1| hypothetical protein SETTUDRAFT_97180 [Setosphaeria turcica Et28A])

HSP 1 Score: 119.398 bits (298), Expect = 2.762e-30
Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 0
Query:   97 AARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
            A+ RR S   H  AP   RR IMS+PLSKELR +HG VRSIP+R  DE+ V  G ++ + GKV  V R KY IHV GI REK+ G+       ++P+PI AS V ITKL LDK RE+IL+R++ GR E
Sbjct:    9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCIHVNGIVREKSNGQ-------SVPIPIAASKVVITKLKLDKDRESILERKSAGREE 128          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|627831809|ref|XP_007687056.1| (hypothetical protein COCMIDRAFT_92753 [Bipolaris oryzae ATCC 44560] >gi|576932900|gb|EUC46434.1| hypothetical protein COCMIDRAFT_92753 [Bipolaris oryzae ATCC 44560])

HSP 1 Score: 119.013 bits (297), Expect = 3.210e-30
Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 0
Query:   97 AARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
            A+ RR S   H  AP   RR IMS+PLSKELR +HG VRSIP+R  DE+ V  G ++ + GKV  V R KY IHV GI REK+ G+       ++P+PI AS V ITKL LDK RE+IL+R++ GR E
Sbjct:    9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCIHVNGIVREKSNGQ-------SVPIPIAASKVVITKLKLDKDRESILERKSAGREE 128          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|396462926|ref|XP_003836074.1| (similar to 60S ribosomal protein L26 [Leptosphaeria maculans JN3] >gi|312212626|emb|CBX92709.1| similar to 60S ribosomal protein L26 [Leptosphaeria maculans JN3])

HSP 1 Score: 117.472 bits (293), Expect = 1.408e-29
Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 0
Query:   89 MGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAAR 228
            M   ++  A+ RR S   H  AP   RR IMS+PLSKELR +HG VRSIPVR  DE++V  G ++ + GK+  V R KY +HV GI REK+ G+       ++P+PI  S V ITKL LDK RE IL+R++ GRAE   R
Sbjct:    1 MAKVQAQLASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPVRKDDEIMVVRGSNKGREGKIQSVYRLKYCLHVAGIVREKSNGQ-------SVPIPIAPSKVVITKLKLDKDREQILERKSAGRAEKKKR 132          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|1028896488|gb|OAK98745.1| (ribosomal protein L24 [Stagonospora sp. SRC1lsM3a])

HSP 1 Score: 117.087 bits (292), Expect = 1.867e-29
Identity = 67/142 (47.18%), Postives = 89/142 (62.68%), Query Frame = 0
Query:   89 MGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKN 230
            M   +S  A+ RR S   H  AP   RR IMS+PLSKELR +HG VRSIPVR  DE++V  G ++ + GK+  V R KY IHV GI REK+ G+       ++P+P+  S V +TKL LDK RE IL+R+  GR E  +++ 
Sbjct:    1 MAKVQSMVASSRRKSRKAHFSAPSSARRVIMSAPLSKELREKHG-VRSIPVRKDDEIMVVRGSNKGREGKITSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREQILERKKNGREEKKSKQQ 134          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|169607701|ref|XP_001797270.1| (hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15] >gi|111064440|gb|EAT85560.1| hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15])

HSP 1 Score: 116.701 bits (291), Expect = 2.160e-29
Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = 0
Query:   93 RSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
            RS  A+ RR S   H  AP   RR IMS+PLSKELR +HG VRSIP+R  DE++V  G ++ + GKV  V R KY IHV GI REK+ G+       ++P+P+  S V +TKL LDK RE IL+R++ GR E
Sbjct:    3 RSIVASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEIMVVRGSNKGREGKVTSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREKILERKSNGREE 126          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|628214452|ref|XP_007713820.1| (hypothetical protein COCCADRAFT_100136 [Bipolaris zeicola 26-R-13] >gi|953434679|ref|XP_014559411.1| hypothetical protein COCVIDRAFT_35447 [Bipolaris victoriae FI3] >gi|576917651|gb|EUC31867.1| hypothetical protein COCCADRAFT_100136 [Bipolaris zeicola 26-R-13] >gi|578492423|gb|EUN29823.1| hypothetical protein COCVIDRAFT_35447 [Bipolaris victoriae FI3])

HSP 1 Score: 117.087 bits (292), Expect = 2.193e-29
Identity = 67/128 (52.34%), Postives = 84/128 (65.62%), Query Frame = 0
Query:   97 AARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAE 224
            A+ RR S   H  AP   RR IMS+PLSKELR +HG VRSIP+R  DE+ V  G ++ + GKV  V R KY IHV GI REK+ G+       ++P+PI  S V ITKL LDK RE+IL+R++ GR E
Sbjct:    9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCIHVNGIVREKSNGQ-------SVPIPIAPSKVVITKLKLDKDRESILERKSAGREE 128          
BLAST of EWM21749.1 vs. NCBI_GenBank
Match: gi|1020701190|gb|KZM21807.1| (structural constituent of ribosome [Ascochyta rabiei])

HSP 1 Score: 116.316 bits (290), Expect = 3.401e-29
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 0
Query:  100 RRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRA 223
            RR S   H  AP   RR IMS+PLSKELR +HG VRSIP+R  DE+ V  G ++ + GKV  V R KY IHV GI REK+ G+       ++PVPI  S V ITKL LDK RE IL+R++ GRA
Sbjct:    9 RRNSRKAHFSAPSSVRRVIMSAPLSKELREKHG-VRSIPIRKDDEITVVRGSNKGREGKVNSVYRLKYCIHVNGIVREKSNGQ-------SVPVPIAPSKVVITKLKLDKDREQILERKSAGRA 124          
The following BLAST results are available for this feature:
BLAST of EWM21749.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102080|gb|EWM21749.1|0.000e+0100.0060s ribosomal protein l26 [Nannochloropsis gaditan... [more]
gi|553183025|ref|XP_005853828.1|5.352e-153100.00large subunit ribosomal protein L26e [Nannochlorop... [more]
gi|1183518073|gb|ORZ41287.1|1.541e-3052.42translation protein SH3-like domain-containing pro... [more]
gi|636598099|ref|XP_008030388.1|2.762e-3053.13hypothetical protein SETTUDRAFT_97180 [Setosphaeri... [more]
gi|627831809|ref|XP_007687056.1|3.210e-3053.13hypothetical protein COCMIDRAFT_92753 [Bipolaris o... [more]
gi|396462926|ref|XP_003836074.1|1.408e-2949.29similar to 60S ribosomal protein L26 [Leptosphaeri... [more]
gi|1028896488|gb|OAK98745.1|1.867e-2947.18ribosomal protein L24 [Stagonospora sp. SRC1lsM3a][more]
gi|169607701|ref|XP_001797270.1|2.160e-2950.76hypothetical protein SNOG_06909 [Parastagonospora ... [more]
gi|628214452|ref|XP_007713820.1|2.193e-2952.34hypothetical protein COCCADRAFT_100136 [Bipolaris ... [more]
gi|1020701190|gb|KZM21807.1|3.401e-2954.03structural constituent of ribosome [Ascochyta rabi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8955rna8955Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications