rna8950, rna8950 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8950
Unique Name	rna8950
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	648
Alignment location	KK037250.1:545766..547375 -

Link to JBrowse

Properties


Property Name	Value
Product	dihydroxy-3-keto-5-methylthiopentene dioxygenase
Orig transcript id	gnl\|cribi\|Naga_100213g6.9984.mrna
Orig protein id	gnl\|cribi\|Naga_100213g6.9984
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:545766..547375 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100213g6	gene8676	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8950	rna8950-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21750.1	cds8920	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:545766..547375-
coding sequence from alignment at KK037250.1:545766..547375-

mRNA sequence

>rna8950 ID=rna8950|Name=rna8950|organism=Nannochloropsis gaditana|type=mRNA|length=648bp
ATGGCAATGCTTCACCGGATCACTATGGCGCCCCGGGTGCGGTCATTGGT
ATCTTGCCGTCCGCTTTCTACGGCAGCCTCGTCGCCGCCTCCGCCGAGCG
AACCCGGTGCTGCCGGGACGATATTAGCCGGTCCTATAGCTTACAGCAAG
GCCCTGTCGCTCTTCCATTGGCTGGTTGGATTTACGATGATCGGGAGTGT
TGGCGCGGTCCTGCAAGCTCAGCAAGTCAAAGGCAAGGAGAAGGGTGTGT
GGATGCACAGGCACAAGTCCCTTGGCCTTTTGGCAGGCATGCTGGTGGCT
CCTCGGTTTATCTTCCGCCTGACGTCCAAGGTCCCAGCGCCTATGAAAGA
ATGGTCGACCATGGAGCAGCTGGCCAGCAAATTCACACATTTGAGTTTGT
ACGGCCTGATGGTGGGGATGCCGGCGACGGGGATTGCGATGGGCTATTAC
GGCGGAAAGGGGCTTCCTTTTTTTTGGACGAAATTCGACGGTGCCGCGAC
CGCGAACGGCGAGGTGGCCAAGCAGGCGTTCAGCATCCACAAGACGATGG
GGACGTACGGCAAGCCATCTTCTCCAGGATCAATCCCTTCCGCTGAACCG
AGCTGGTTTGAAAAAGGGGAACCGTTGAAAAGAGCTGGCTTGAAATAA

protein sequence of rna8950

>rna8950-protein ID=rna8950-protein|Name=rna8950|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MQSFQAFVAVYSAPAHRSIMLDAWYMDDDTTMDQREEHRLKPNKPATLED
LQTLGVLHWTFDADSYEDSPEFAAMRAERGYDYEDTCTVSRETMPNYEEK
IKSFYEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRIKVEKNDLIVLPEG
IYHRFTLDNKNYIKALRLFKGVPIWTPYNRCVIRAELSSAAAANGRMRGF
NKFCFSAKNPHNVAESQA

mRNA from alignment at KK037250.1:545766..547375-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8950 ID=rna8950|Name=rna8950|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp|location=Sequence derived from alignment at KK037250.1:545766..547375- (Nannochloropsis gaditana)
ATGCAATCCTTTCAAGGTACCTCAAATTTTCAAGACAAAGAATCGACGAC
GGGAAGAGGGTGATAGGACCGTGCCGCACGAGCGCCGCAGAGGGATGCCG
GGAAGGAAGGTGGATATGGGCCACGGCCCCAACAACGCTTTCGCGCCATA
TTTGGGAGCCCCGGACATGCCTGGGGAAGTAAAATATGCCTCCAGTCCAT
GAACCCAACCTTTCATGTCGTTGAAAGGAACGTTCTTGCGGACCATCTTG
CGGTGCTGTTGCATCCGTTGTGTTCCACTCGTAAGTGGCCATCGACAAAT
TTGTTCTTGATCTCACGTACAGCTCATCACCCCACCTTTCCACAGCCTTC
GTTGCTGTCTACTCAGCCCCTGCGCACAGATCAATCATGCTGGATGCTTG
GTACATGGATGATGATACTACGATGGATCAACGGGAAGAGCACCGTCTAA
AGCCAAATAAGCCGGCGACATTGGAGGATCTTCAAACATTGGGCGTCCTG
CATTGGACTTTTGACGCAGATTCGTACGAAGACAGCCCTGAGTTTGCTGT
ACGTGTTGATGCAAGGAATGTCCGGACATGGACAGCAAAAGGATGGCACC
ATGTTAGCGAGCTGAATAGACATTGTACATGTTCACATTGTATATAATTA
AGGAGCCTTACATGAAAAGGAGAGGCAGGAGTCTTGTTTCGGGTGACCCC
TCAAAGTTGGGGAACTATCTCGCTCACATGAACACATTTCTTTCCCAACA
TTAGGCAATGCGGGCCGAGCGGGGATACGATTATGAAGATACTTGCACTG
TCTCGCGTGAGACCATGCCAAATTATGAAGAAAAAATCAAGAGTTTTTAT
GAGGAGCATATTCATTCGGATGAGGTACGTCAGCAGTACGGGGTGAATTC
GCTTGGTGAGATAGTAAACAGAGATGGATGCATCACAAGAATAGAGATGA
TCGTAAGCAATGTTGTAGGGTGGCGATGGATGGTAGGCTAAGGCAGATGG
GGAAGACTGTTTGGTTCTTACTTTCTGACCTCTCTACCAGAGAAACGCTT
GTGTGCATTTCACCCCTCTATTTGGTTTAGAAGTCCTTTCCCGTTTAACT
GGAAGACTGTCGCTACATTGTATGTCTACAGGAAATTCGTTACTGTCTGG
ACGGGTCTGGATACTTTGACGTGCGAGACGGCCAAGACCGATGGATTCGC
ATCAAGGTCGAAAAGAACGATTTGATTGTTCTTCCGGAGGGCATCTACCA
CCGGTTCACACTTGACAACAAAAATTATATCAAGGCTCTGCGGCTCTTCA
AAGGCGTACCGATCTGGACTCCTTACAACAGGTGCGTGAGTAGTTCCATA
CAAAACGACTGTTTTTGTAACCAATCTGTGCAGCATTTGTCGTCTTTCCC
TTTTTATAATCTCTCTCCCGAACTTCAGTACGTCGACACATCTCATAAGT
ATGTGCTTGATACCTACAGGCCGCAAGAAAATCACCCTAGCCGAGCTAAG
TACGCGCAGAGCTTTCTTCAGCAGCAGCAGCAAATGGCCGCATGAGGGGA
TTCAATAAGTTTTGTTTTAGCGCGAAAAATCCACACAACGTTGCAGAGTC
ACAGGCGTAG

Coding sequence (CDS) from alignment at KK037250.1:545766..547375-

>rna8950 ID=rna8950|Name=rna8950|organism=Nannochloropsis gaditana|type=CDS|length=3285bp|location=Sequence derived from alignment at KK037250.1:545766..547375- (Nannochloropsis gaditana)
TACGCGCAGAGCTTTCTTCAGCAGCAGCAGCAAATGGCCGCATGAGGGGA
TTCAATAAGTTTTGTTTTAGCGCGAAAAATCCACACAACGTTGCAGAGTC
ACAGGCGTAGGAAATTCGTTACTGTCTGGACGGGTCTGGATACTTTGACG
TGCGAGACGGCCAAGACCGATGGATTCGCATCAAGGTCGAAAAGAACGAT
TTGATTGTTCTTCCGGAGGGCATCTACCACCGGTTCACACTTGACAACAA
AAATTATATCAAGGCTCTGCGGCTCTTCAAAGGCGTACCGATCTGGACTC
CTTACAACAGGTGCGTGAGCAATGCGGGCCGAGCGGGGATACGATTATGA
AGATACTTGCACTGTCTCGCGTGAGACCATGCCAAATTATGAAGAAAAAA
TCAAGAGTTTTTATGAGGAGCATATTCATTCGGATGAGCCTTCGTTGCTG
TCTACTCAGCCCCTGCGCACAGATCAATCATGCTGGATGCTTGGTACATG
GATGATGATACTACGATGGATCAACGGGAAGAGCACCGTCTAAAGCCAAA
TAAGCCGGCGACATTGGAGGATCTTCAAACATTGGGCGTCCTGCATTGGA
CTTTTGACGCAGATTCGTACGAAGACAGCCCTGAGTTTGCTATGCAATCC
TTTCAAGTACGCGCAGAGCTTTCTTCAGCAGCAGCAGCAAATGGCCGCAT
GAGGGGATTCAATAAGTTTTGTTTTAGCGCGAAAAATCCACACAACGTTG
CAGAGTCACAGGCGTAGGAAATTCGTTACTGTCTGGACGGGTCTGGATAC
TTTGACGTGCGAGACGGCCAAGACCGATGGATTCGCATCAAGGTCGAAAA
GAACGATTTGATTGTTCTTCCGGAGGGCATCTACCACCGGTTCACACTTG
ACAACAAAAATTATATCAAGGCTCTGCGGCTCTTCAAAGGCGTACCGATC
TGGACTCCTTACAACAGGTGCGTGAGCAATGCGGGCCGAGCGGGGATACG
ATTATGAAGATACTTGCACTGTCTCGCGTGAGACCATGCCAAATTATGAA
GAAAAAATCAAGAGTTTTTATGAGGAGCATATTCATTCGGATGAGCCTTC
GTTGCTGTCTACTCAGCCCCTGCGCACAGATCAATCATGCTGGATGCTTG
GTACATGGATGATGATACTACGATGGATCAACGGGAAGAGCACCGTCTAA
AGCCAAATAAGCCGGCGACATTGGAGGATCTTCAAACATTGGGCGTCCTG
CATTGGACTTTTGACGCAGATTCGTACGAAGACAGCCCTGAGTTTGCTAT
GCAATCCTTTCAAGTACGCGCAGAGCTTTCTTCAGCAGCAGCAGCAAATG
GCCGCATGAGGGGATTCAATAAGTTTTGTTTTAGCGCGAAAAATCCACAC
AACGTTGCAGAGTCACAGGCGTAGGAAATTCGTTACTGTCTGGACGGGTC
TGGATACTTTGACGTGCGAGACGGCCAAGACCGATGGATTCGCATCAAGG
TCGAAAAGAACGATTTGATTGTTCTTCCGGAGGGCATCTACCACCGGTTC
ACACTTGACAACAAAAATTATATCAAGGCTCTGCGGCTCTTCAAAGGCGT
ACCGATCTGGACTCCTTACAACAGGTGCGTGAGCAATGCGGGCCGAGCGG
GGATACGATTATGAAGATACTTGCACTGTCTCGCGTGAGACCATGCCAAA
TTATGAAGAAAAAATCAAGAGTTTTTATGAGGAGCATATTCATTCGGATG
AGCCTTCGTTGCTGTCTACTCAGCCCCTGCGCACAGATCAATCATGCTGG
ATGCTTGGTACATGGATGATGATACTACGATGGATCAACGGGAAGAGCAC
CGTCTAAAGCCAAATAAGCCGGCGACATTGGAGGATCTTCAAACATTGGG
CGTCCTGCATTGGACTTTTGACGCAGATTCGTACGAAGACAGCCCTGAGT
TTGCTATGCAATCCTTTCAAGTACGCGCAGAGCTTTCTTCAGCAGCAGCA
GCAAATGGCCGCATGAGGGGATTCAATAAGTTTTGTTTTAGCGCGAAAAA
TCCACACAACGTTGCAGAGTCACAGGCGTAGGAAATTCGTTACTGTCTGG
ACGGGTCTGGATACTTTGACGTGCGAGACGGCCAAGACCGATGGATTCGC
ATCAAGGTCGAAAAGAACGATTTGATTGTTCTTCCGGAGGGCATCTACCA
CCGGTTCACACTTGACAACAAAAATTATATCAAGGCTCTGCGGCTCTTCA
AAGGCGTACCGATCTGGACTCCTTACAACAGGTGCGTGAGCAATGCGGGC
CGAGCGGGGATACGATTATGAAGATACTTGCACTGTCTCGCGTGAGACCA
TGCCAAATTATGAAGAAAAAATCAAGAGTTTTTATGAGGAGCATATTCAT
TCGGATGAGCCTTCGTTGCTGTCTACTCAGCCCCTGCGCACAGATCAATC
ATGCTGGATGCTTGGTACATGGATGATGATACTACGATGGATCAACGGGA
AGAGCACCGTCTAAAGCCAAATAAGCCGGCGACATTGGAGGATCTTCAAA
CATTGGGCGTCCTGCATTGGACTTTTGACGCAGATTCGTACGAAGACAGC
CCTGAGTTTGCTATGCAATCCTTTCAAGTACGCGCAGAGCTTTCTTCAGC
AGCAGCAGCAAATGGCCGCATGAGGGGATTCAATAAGTTTTGTTTTAGCG
CGAAAAATCCACACAACGTTGCAGAGTCACAGGCGTAGGAAATTCGTTAC
TGTCTGGACGGGTCTGGATACTTTGACGTGCGAGACGGCCAAGACCGATG
GATTCGCATCAAGGTCGAAAAGAACGATTTGATTGTTCTTCCGGAGGGCA
TCTACCACCGGTTCACACTTGACAACAAAAATTATATCAAGGCTCTGCGG
CTCTTCAAAGGCGTACCGATCTGGACTCCTTACAACAGGTGCGTGAGCAA
TGCGGGCCGAGCGGGGATACGATTATGAAGATACTTGCACTGTCTCGCGT
GAGACCATGCCAAATTATGAAGAAAAAATCAAGAGTTTTTATGAGGAGCA
TATTCATTCGGATGAGCCTTCGTTGCTGTCTACTCAGCCCCTGCGCACAG
ATCAATCATGCTGGATGCTTGGTACATGGATGATGATACTACGATGGATC
AACGGGAAGAGCACCGTCTAAAGCCAAATAAGCCGGCGACATTGGAGGAT
CTTCAAACATTGGGCGTCCTGCATTGGACTTTTGACGCAGATTCGTACGA
AGACAGCCCTGAGTTTGCTATGCAATCCTTTCAAG

Synonyms

Publications