rna8943, rna8943 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8943
Unique Name	rna8943
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1284
Alignment location	KK037250.1:533640..535676 -

Link to JBrowse

Properties


Property Name	Value
Product	TB2/DP1/HVA22-related protein
Orig transcript id	gnl\|cribi\|Naga_100815g2.2468.mrna
Orig protein id	gnl\|cribi\|Naga_100815g2.2468
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:533640..535676 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100815g2	gene8669	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8943	rna8943-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21760.1	cds8913	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:533640..535676-
coding sequence from alignment at KK037250.1:533640..535676-

mRNA sequence

>rna8943 ID=rna8943|Name=rna8943|organism=Nannochloropsis gaditana|type=mRNA|length=1284bp
ACAGATCCCTCACCGCGCGAACACCTATGGTATGCTGGTACAACTTTTCG
CCGCATTTGACCTGGCACCTGAACGCCCTCGTCAACGACATCAAGACCCG
CCCTCTTGAAACCCTCCTTCGCCCGGACAAAGCGTACGTGCAAAGCTCGG
ACCCCTTTGCCCCCATCCTTGTGCTCTGCCTCTGGTTCATCGCGCTCACC
GGCCTGCTGGGCGCGGTTACCCAAGAATTCTCCTGGGTGGATCGGATCTG
GTCGGTCGCCCCCCCCTTGTACGCGTGGTTGTTCGCGCTGCACCCGTACA
TAGCGTTGGACACGGTCTGGCCGACGACTGTGTCCGAGTGCATGACCCGC
CCTTTTCTGTTGGCTGGTCTTGCGTCTCTGTGGGGCCTCCGACTCACCTA
CAACTTCTGGCGCAAGGGGGGATACGCGGGGGGGGGAGAAGACTATCGAT
GGGAGGAGATCAGGACTTGGTTCTCCTTTTCTACCTTGCAGCTCTTCAAC
GTGGTGTTTATTGCCTTCTTTCAGAACATTCTCCTCTTCCTCCTCATCGC
CCCCGCTTATCTCGCCTGGGTGGGCAGGACCTACCATGCCCTCACCCTCG
TCGACGTCGTCCTCGCCTCTCTCTTCCTCCTCCTCCTCCTCGTCGAGACC
GTGGCCGATCAACAACAATGGGTCTTCCAGCGTCAAAAATACCAAGCCCT
CTTTCAACGTCCCAGCCGAAAGCGCCGCGCCTCCCTCCGGGCAACCACCG
CGGAATCTCCCGCCCGTCCCCCGAAAAACCCCGACACCTCCATCCCCCTC
GTCACCGGGGACATCGCCGACGGTTTCCTGCAGTCAGGCCTCTTCGCCTT
CTCCCGGCACCCAAACTTCTGGGCGGAGATGTCCTTGTGGTGGGTTTTCC
ATCTCTTTGCCTACCCGGCCGCGGGCATTCACTTGGAACGACGGCACGAT
TGGAACAACTTCGCACGCTGGCCGTTCTGGGCAAATTGGACGGCCGTGGG
GCCTCTCCTCTTGACCCTCCTCTTTCAAGGCTCCACCTCGCTCACAGAGG
AGCTCAGCGCCCGCAAATATCCGCAGTACCGGCGCTACCAAAAGCGAGTG
TCCCGGCTCCTGCCTTGGACTCCCAAGGCGCGGAAGGACTGAGGGGGGGA
GGGAAGGGCGGGGGGAGGGAGGTGGACCCCACGAGGGGCCACCGAGATGA
CGGCAAATTGAGAAGAGGAAAGCAGAGACGGTGACTCATTATATCATGGG
TGTGCGGAGCTTGGAAAGATGCCTGACCCCCCCC

protein sequence of rna8943

>rna8943-protein ID=rna8943-protein|Name=rna8943|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MSSGGAQGQTPMQRLTIMKDNVLKKVERQMEQYPSLTMRSSLLDMEKKVN
VPAPALFILGSSSLVLLLVLLVSMEGVALLVGLAYPLLGALKAIKVQEAH
VIKFFIQYFLLFNALNLLETFLPLSRLPLYYLGKLLFLAWAFNPKTQGAR
LVYGTLRPLLLPHLGIALGASGAEQSRPGGGGRKRGGGRENTGEGRFGAR
DGSGEGASIHLRIELAARGLEKPAEPERLDTLCQLRILPMTGGHSEVRRA
ALDEGQWYKSRINTAPPQDAPDWRHDPQFLRVPTTEDNVLEVLIVNKMSW
RDHPLGRVRLPLRGLSFPIETTLPLEDPFGDEREEGGEENERGEVQGELE
IHLARVEE

mRNA from alignment at KK037250.1:533640..535676-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8943 ID=rna8943|Name=rna8943|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp|location=Sequence derived from alignment at KK037250.1:533640..535676- (Nannochloropsis gaditana)
CCAGATGATTCATTCATGTTAAGTGCACACTATTGTTTGAGGGTTTGGGC
TCCCTGTTGCTGCGACAGAACCTGGTAATCATGGCGATGGCCCTAATAAG
CTGTACCTCGCTGTCGCCTCGCTTACTTCTTCATACCGCGTTACTGAAAA
ACATGTCCCCAAACTTTGTCAATCCTGACATGAAGCTGACAGCCACAAAC
GCGGTGAACGAGCATGCAATGATCATGTTGTGAAAATGGAGGGATTAAGC
CCAAACGGGGCAATTTGACAGTGACATAGATTCAGGCTAGCGTGACGGAC
TCGACCAACATCGGGTAGGTCACGGTGGAAGGCCACGCACTGTAAAAAGG
ATAACTTTATCCAGGTTGCCCATTCAGTCCGCGGGCACATGAATTGACAC
CGCCGTCAACATTCCACGAACTGAATCCTATTGCCAGTGATTTTGACGGG
CGTGCACTTACCCGTCTCGCTACCTCACAGAAGGAAAAGAGGGGCTTAAC
GCAGTCATATCTTAAGCCTTTTGCTCCATTGTATCAAGGCCCGGTACCAG
CATGAGCAGCGGTGGCGCGCAGGGCCAGACGCCCATGCAGCGGCTCACGA
TAATGAAGGACAACGTGCTTAAAAAGGTGGAGCGCCAGATGGAACAGTAC
CCCTCGCTCACGATGCGTTCCTCGCTGTTGGACATGGAGAAGAAAGTGAA
TGTGCCAGCCCCTGCACTGTTCATCCTTGGCAGCTCATCTCTGGTCCTTC
TTTTGGTCCTTCTTGTTAGCATGGAGGGCGTCGCGTAAGTCGTAGGCAGG
AATGTGCTGTTGAAACCCTCTTCTTTGTGTGTATTAGCCCTGATTGGCTA
AATTAAATTCACTGGGCTCTTGCCTCCCGCGGCGACCATGTCCGGCCAGC
ATATTTCACTTCACGCCCCTCAATTCCTCGAGAAGAATCGTCCCTCATGA
ATGGATGCACAATACGAATCCCAATACACATTCTCACCCCTCCCCGTCGC
TTCCCCGGGCCCTCAGGCTCCTGGTCGGCTTGGCCTACCCACTCCTCGGC
GCCCTCAAGGCCATCAAGGTGCAGGAGGCGCACGTCATCAAGTTCTTCAT
CCAATACTTCCTCCTCTTCAACGCCCTGAATCTGTTGGAGACCTTCCTGC
CTCTCAGCCGTCTCCCTTTGTACTACTTGGGGAAGCTCCTCTTTCTGGCA
TGGGCGTTCAACCCCAAGACCCAGGGCGCCCGGCTCGTCTACGGCACCCT
CCGCCCCCTCCTCCTTCCCCACCTCGGCATCGCTTTGGGTGCATCCGGGG
CCGAGCAGTCGAGGCCTGGGGGAGGAGGCAGGAAGCGAGGGGGGGGGAGG
GAAAACACGGGGGAGGGGAGGTTCGGGGCCCGGGACGGGAGCGGGGAAGG
TGCGAGCATCCACCTTCGCATCGAACTCGCAGCCCGGGGCTTGGAAAAGC
CGGCGGAACCCGAGCGGCTGGACACTCTGTGCCAACTCCGCATCCTGCCC
ATGACAGGTGGGCACAGCGAGGTCCGGAGAGCGGCCCTGGACGAAGGCCA
GTGGTACAAGAGTCGGATCAACACCGCGCCTCCCCAAGACGCCCCCGACT
GGCGACACGACCCGCAGTTCCTCCGCGTCCCGACCACGGAGGATAACGTC
TTGGAGGTGTTGATTGTGAATAAGATGAGTTGGAGGGACCATCCCTTGGG
CCGGGTGCGCCTGCCTCTGAGGGGGCTCTCTTTTCCCATCGAGACCACAT
TGCCCCTTGAGGACCCGTTTGGAGACGAGAGGGAGGAGGGAGGGGAGGAG
AATGAGCGGGGGGAGGTTCAGGGGGAGCTGGAGATTCATCTTGCGCGAGT
GGAAGAATAAGGGAGGGAGGAGGGCGGAAGGGAGGAGGGAGAGTTTGGGA
ACGGTCTTCTGGCGAGAGGGATGGGGATTTTGAGAGGGAAGAGGTGGGAT
GAAAGGCACGACTGCAGTGATCGAGCGTCATAGAAGGCAAAGAGGGAAGA
AATAGGTGCTTTGTTTTGGGCTGGGGGTCCCATTTCT

Coding sequence (CDS) from alignment at KK037250.1:533640..535676-

>rna8943 ID=rna8943|Name=rna8943|organism=Nannochloropsis gaditana|type=CDS|length=2154bp|location=Sequence derived from alignment at KK037250.1:533640..535676- (Nannochloropsis gaditana)
GCTCCTGGTCGGCTTGGCCTACCCACTCCTCGGCGCCCTCAAGGCCATCA
AGGTGCAGGAGGCGCACGTCATCAAGTTCTTCATCCAATACTTCCTCCTC
TTCAACGCCCTGAATCTGTTGGAGACCTTCCTGCCTCTCAGCCGTCTCCC
TTTGTACTACTTGGGGAAGCTCCTCTTTCTGGCATGGGCGTTCAACCCCA
AGACCCAGGGCGCCCGGCTCGTCTACGGCACCCTCCGCCCCCTCCTCCTT
CCCCACCTCGGCATCGCTTTGGGTGCATCCGGGGCCGAGCAGTCGAGGCC
TGGGGGAGGAGGCAGGAAGCGAGGGGGGGGGAGGGAAAACACGGGGGAGG
GGAGGTTCGGGGCCCGGGACGGGAGCGGGGAAGGTGCGAGCATCCACCTT
CGCATCGAACTCGCAGCCCGGGGCTTGGAAAAGCCGGCGGAACCCGAGCG
GCTGGACACTCTGTGCCAACTCCGCATCCTGCCCATGACAGGTGGGCACA
GCGAGGTCCGGAGAGCGGCCCTGGACGAAGGCCAGTGGTACAAGAGTCGG
ATCAACACCGCGCCTCCCCAAGACGCCCCCGACTGGCGACACGACCCGCA
GTTCCTCCGCGTCCCGACCACGGAGGATAACGTCTTGGAGGTGTTGATTG
TGAATAAGATGAGTTGGAGGGACCATCCCTTGGGCCGGGTGCGCCTGCCT
CTGAGGGGGCTCTCTTTTCCCATCGAGACCACATTGCCCCTTGAGGACCC
GTTTGGAGACGAGAGGGAGGAGGGAGGGGAGGAGAATGAGCGGGGGGAGG
TTCAGGGGGAGCTGGAGATTCATCTTGCGCGAGTGGAAGAATAAATGAGC
AGCGGTGGCGCGCAGGGCCAGACGCCCATGCAGCGGCTCACGATAATGAA
GGACAACGTGCTTAAAAAGGTGGAGCGCCAGATGGAACAGTACCCCTCGC
TCACGATGCGTTCCTCGCTGTTGGACATGGAGAAGAAAGTGAATGTGCCA
GCCCCTGCACTGTTCATCCTTGGCAGCTCATCTCTGGTCCTTCTTTTGGT
CCTTCTTGTTAGCATGGAGGGCGTCGCGCTCCTGGTCGGCTTGGCCTACC
CACTCCTCGGCGCCCTCAAGGCCATCAAGGTGCAGGAGGCGCACGTCATC
AAGTTCTTCATCCAATACTTCCTCCTCTTCAACGCCCTGAATCTGTTGGA
GACCTTCCTGCCTCTCAGCCGTCTCCCTTTGTACTACTTGGGGAAGCTCC
TCTTTCTGGCATGGGCGTTCAACCCCAAGACCCAGGGCGCCCGGCTCGTC
TACGGCACCCTCCGCCCCCTCCTCCTTCCCCACCTCGGCATCGCTTTGGG
TGCATCCGGGGCCGAGCAGTCGAGGCCTGGGGGAGGAGGCAGGAAGCGAG
GGGGGGGGAGGGAAAACACGGGGGAGGGGAGGTTCGGGGCCCGGGACGGG
AGCGGGGAAGGTGCGAGCATCCACCTTCGCATCGAACTCGCAGCCCGGGG
CTTGGAAAAGCCGGCGGAACCCGAGCGGCTGGACACTCTGTGCCAACTCC
GCATCCTGCCCATGACAGGTGGGCACAGCGAGGTCCGGAGAGCGGCCCTG
GACGAAGGCCAGTGGTACAAGAGTCGGATCAACACCGCGCCTCCCCAAGA
CGCCCCCGACTGGCGACACGACCCGCAGTTCCTCCGCGTCCCGACCACGG
AGGATAACGTCTTGGAGGTGTTGATTGTGAATAAGATGAGTTGGAGGGAC
CATCCCTTGGGCCGGGTGCGCCTGCCTCTGAGGGGGCTCTCTTTTCCCAT
CGAGACCACATTGCCCCTTGAGGACCCGTTTGGAGACGAGAGGGAGGAGG
GAGGGGAGGAGAATGAGCGGGGGGAGGTTCAGGGGGAGCTGGAGATTCAT
CTTGCGCGAGTGGAAGAATAAATGAGCAGCGGTGGCGCGCAGGGCCAGAC
GCCCATGCAGCGGCTCACGATAATGAAGGACAACGTGCTTAAAAAGGTGG
AGCGCCAGATGGAACAGTACCCCTCGCTCACGATGCGTTCCTCGCTGTTG
GACATGGAGAAGAAAGTGAATGTGCCAGCCCCTGCACTGTTCATCCTTGG
CAGCTCATCTCTGGTCCTTCTTTTGGTCCTTCTTGTTAGCATGGAGGGCG
TCGC

Synonyms

Publications