rna8939, rna8939 (mRNA) Nannochloropsis gaditana

Overview
Namerna8939
Unique Namerna8939
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length947
Alignment locationKK037250.1:525083..526409 +

Link to JBrowse

Properties
Property NameValue
ProductTRAM, LAG1 and CLN8 lipid-sensing domain containing protein
Orig transcript idgnl|cribi|Naga_100298g4.7624.mrna
Orig protein idgnl|cribi|Naga_100298g4.7624
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:525083..526409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100298g4gene8665Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8939rna8939-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21768.1cds8909Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8939 ID=rna8939|Name=rna8939|organism=Nannochloropsis gaditana|type=mRNA|length=947bp
ACGACTAACTTACGCACAGGGCATTGTTTGATACCTTGGACTGTCCATCT
TAATTGCCAGGGTCGCCACCGGGGGAAGGGACGTCGGCGCGCAGGTTCAA
ACGGGCTGCCAAGAAGACAGCGAGTCTTTCGTGTGCGCGCGTTGGAAGTC
AAGACCGACGCGTTTGAAAGGAGGACAAGCAGGAGAGGGCAATGGCGCTA
CCATGCACGACTGAGTGCTGTGCACCGTGCTGTGGCATATTTTCCATCAT
CGGCTTCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTA
TCTTCGTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTAC
GGAGGCGCGGGTATTTACGCGGGCACCCTTGCTCTATGTGTGGTTGCATG
GATGTATGACAAGAAAAAGAAGGAGCACCGGGCCGCGACGGCAGGTTTAC
TGAAGGAGGAGGAGCACGTCTCTCTCAACATCCAGCGACCAGGATCATAC
GGTGCGACCACTCGCTAGCCCCACTTGACTAATAATGTAGGCGTACTCAT
GAACATTCCCCCTTTGAAGCCTTTGTGTGAAGGAGAGGGACCGCGTGCTT
TGACTGTCTTTCTTCTTGGTGTCGAGCGTTTGTGTAATTTCGTCTAGCCG
GGTGTTTGGAGCCATGGGTAGGAGAGGAATGCGATGCATTGCGTGTAGGG
GGGTGGCGAACGTCTGTATCGTGCCTCTTGCTTCCTGTACCCCCCCCCAA
GTCTGGGAGGAGTGTGCGTGGTTGTGGACACGTGAGGAGGAGCTGAAAAA
GTGCAGGAACATGCGGAGGAGCGGGTGCCTGGGGGAGATAGATCGAGGAA
GAAAGAAAGAGGCTGGGATCCAGACACCCTTTGAACGACCGCCACACCGC
TTGTTCCTCGGGGCATGTCGATGGGCGTCGCCTCTGAACACCTTCCC
back to top

protein sequence of rna8939

>rna8939-protein ID=rna8939-protein|Name=rna8939|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MIKTLSMMFGEVGIIVNWWDVLVTVVFFSVVLLCWYQAMCSYFTQTSKDG
QGPSQKQKAWFLSFFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRS
VLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSI
SFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLY
SLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASSSMASP
CGDSRDPEGEPVKREKSA
back to top

mRNA from alignment at KK037250.1:525083..526409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8939 ID=rna8939|Name=rna8939|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp|location=Sequence derived from alignment at KK037250.1:525083..526409+ (Nannochloropsis gaditana)
CAAACCCTCGAAGTGTCTATCTACAGTCGTCGACGTACGTGTCCGAATCT
CAGCATCTAGCCAATCTATATTTTCCTAATAGGCGAACATTTGTACCACC
ACCAGCGTTAAAGCAGCAAATATTTCAGTGTGGCCACAACAAGGCCTTAA
AAGCACAGCTTAAAGCTTTTAAAAAGGAATTTTTGGTCGTGGGCCGGAAC
TTACGTCGCGTCGCGCAGAGCTATACGTTGGTGCTGAGATATTTCCACCG
CTAGCATCTATCCGATGATAAAAACATTGTCAATGATGTTTGGAGAGGTT
GGAATAATTGTAAATTGGTGGGATGTACTGGTCACCGTAGTCTTTTTttc
cgtcgtcctcctctgctggTACCAGGCAATGTGTTCCTATTTCACCCAGA
CGAGCAAAGACGGACAGGGTCCTTCCCAAAAGCAAAAGGCCTggttcctc
tctttctttatcTCCTGTCTATCGACCCCATTGGGCGTGTATTATTTGTC
GCGTGCTCTTTCGCCGGAGTGGGATGCTTCGGAGATGCTTGACACGGACG
CTTTTTCTCGCAGCGTTTTGACACTGTTTTGGGTGTACTTGATCGTAGAC
ATGGCTGTTGGTTATTTTGAATATCCAGGAGAATTCGGGTTGCTGAGCGG
CTGGGTGCACCATATTTTTTACGCGCTGTTTCTGGGCTATGCCTACATGA
AGGGGTACTCCATTTCCTTTACCCACACGTTGATCATGgaatcctcctcc
atttttctATCGGGAGGTCGGCTCTTCCCTCGCTTGAGGTCAGATTGGGC
CTTCGggtgccttttccttctctttcgagTGGTGTATCATCTCTACTTGC
TCCTGAAGCTCTATagccttcccgccccccggggCGACCTCTGGCCGCCA
GTCGCAGGGGTCTGGGTGTTACATCTCTACTGGTTTCGGGGATGGATGCA
GGGCATGCGACGAAGGGCACAGCAGAGCAAGACGGGCGAGGCGTCGTCAT
CGATGGCATCCCCCTGTGGCGACTCCCGGGATCCGGAAGGGGAGCCGGTG
AAACGGGAGAAGTCCGCTTAACGGCAGCGGAGAGCCCGCCAaatgggggg
cggggctcaGGCATGATGGAGTTCGGGGACGGAAGTAACACGCTGCCATG
CACCGTGATGGCACTGTGTAGCCTTTGTCGGAGACCCGAGGGGCCTTTAA
GGGGGGGAGCCCTCATGTCGAAAGCCGCTGGCCCGAGAGGCCGTGGCCTG
TATCATAAAATTTTAGAACAAAGCGAGAAATTGACAATTTCAAGGAACGC
AAAGTAACTCGCCAAAACAATCCTGTC
back to top

Coding sequence (CDS) from alignment at KK037250.1:525083..526409+

>rna8939 ID=rna8939|Name=rna8939|organism=Nannochloropsis gaditana|type=CDS|length=807bp|location=Sequence derived from alignment at KK037250.1:525083..526409+ (Nannochloropsis gaditana)
ATGATAAAAACATTGTCAATGATGTTTGGAGAGGTTGGAATAATTGTAAA
TTGGTGGGATGTACTGGTCACCGTAGTCTTTTTttccgtcgtcctcctct
gctggTACCAGGCAATGTGTTCCTATTTCACCCAGACGAGCAAAGACGGA
CAGGGTCCTTCCCAAAAGCAAAAGGCCTggttcctctctttctttatcTC
CTGTCTATCGACCCCATTGGGCGTGTATTATTTGTCGCGTGCTCTTTCGC
CGGAGTGGGATGCTTCGGAGATGCTTGACACGGACGCTTTTTCTCGCAGC
GTTTTGACACTGTTTTGGGTGTACTTGATCGTAGACATGGCTGTTGGTTA
TTTTGAATATCCAGGAGAATTCGGGTTGCTGAGCGGCTGGGTGCACCATA
TTTTTTACGCGCTGTTTCTGGGCTATGCCTACATGAAGGGGTACTCCATT
TCCTTTACCCACACGTTGATCATGgaatcctcctccatttttctATCGGG
AGGTCGGCTCTTCCCTCGCTTGAGGTCAGATTGGGCCTTCGggtgccttt
tccttctctttcgagTGGTGTATCATCTCTACTTGCTCCTGAAGCTCTAT
agccttcccgccccccggggCGACCTCTGGCCGCCAGTCGCAGGGGTCTG
GGTGTTACATCTCTACTGGTTTCGGGGATGGATGCAGGGCATGCGACGAA
GGGCACAGCAGAGCAAGACGGGCGAGGCGTCGTCATCGATGGCATCCCCC
TGTGGCGACTCCCGGGATCCGGAAGGGGAGCCGGTGAAACGGGAGAAGTC
CGCTTAA
back to top
Synonyms
Publications