EWM21768.1, cds8909 (CDS) Nannochloropsis gaditana

Overview
NameEWM21768.1
Unique Namecds8909
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:525347..526153 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21768.1
ProductTRAM, LAG1 and CLN8 lipid-sensing domain containing protein
Orig transcript idgnl|cribi|Naga_100298g4.7624.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:525347..526153 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|585102102|gb|EWM21768.1| (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 547.354 bits (1409), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MIKTLSMMFGEVGIIVNWWDVLVTVVFFSVVLLCWYQAMCSYFTQTSKDGQGPSQKQKAWFLSFFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASSSMASPCGDSRDPEGEPVKREKSA 268
            MIKTLSMMFGEVGIIVNWWDVLVTVVFFSVVLLCWYQAMCSYFTQTSKDGQGPSQKQKAWFLSFFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASSSMASPCGDSRDPEGEPVKREKSA
Sbjct:    1 MIKTLSMMFGEVGIIVNWWDVLVTVVFFSVVLLCWYQAMCSYFTQTSKDGQGPSQKQKAWFLSFFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASSSMASPCGDSRDPEGEPVKREKSA 268          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|585101859|gb|EWM21604.1| (hypothetical protein Naga_100012g31 [Nannochloropsis gaditana])

HSP 1 Score: 126.331 bits (316), Expect = 3.852e-31
Identity = 73/219 (33.33%), Postives = 116/219 (52.97%), Query Frame = 0
Query:   54 SQKQKAWFLSFFISCLSTPLGVYYLSRALSPEWDASEML-DTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASSSM-----ASPCGDSRDPEGEPVKREK 266
            + K+ AW LS F S ++  L +  L +  +  W    +L   D  SR   T F  +LI+D+A+G   YP +  LLSGWVHH FY   L +A    +S+ F   L +E  +  L+ G ++P+ RSDW FG  FL+ R+ YHL+L + +  +  PR  +W  +A  + LH+YWF  W +  RR+    K G+   +M     A+  G+  + +G    +++
Sbjct:   80 TPKRLAWLLSAFSSFITASLSMSALYQLFAQSWVIENVLFADDRLSRFTATFFIAFLILDLALGMRYYPSQIHLLSGWVHHCFYLGVLAWALHSHFSLGFCLFLPLEIPTFILAVGSIYPQRRSDWLFGMTFLITRICYHLWLFVLVREIKDPRLPVWVVIAVTFCLHIYWFGLWWKSYRRKYLLGKGGKKEGAMDGKGVAAAAGEQGNEDGGRKSKKE 298          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|1134794693|gb|OMJ09798.1| (hypothetical protein AYI70_g10724 [Smittium culicis] >gi|1134816263|gb|OMJ22259.1| hypothetical protein AYI70_g2995 [Smittium culicis])

HSP 1 Score: 105.145 bits (261), Expect = 9.705e-24
Identity = 65/204 (31.86%), Postives = 101/204 (49.51%), Query Frame = 0
Query:   43 FTQTSKDGQGPSQKQKAWFLSFFISCLS-TPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASS 245
            F    K+    ++KQ AW L+ F+SC++ T   + YL        D + ++ +D+FS      F  YL  D+A+G   Y   F  ++G+ HH  Y L + Y  + GYS  F    IME  +I L+ G +   LR DW F   F   R++ H+ LL + YS   P   +W  VA    LH+YWF  +++  +R  ++ K    +S
Sbjct:   25 FYIVRKNSSYSTEKQLAWVLT-FVSCVTVTCASLPYLFLLFKNNLDVTRLVSSDSFSLLTCGFFEAYLFWDLAIGMKYYRSTFDFVTGYFHHAAYILLVYYVAISGYSAIFVLCCIMELPTIVLAVGSIHKNLRKDWLFASCFFSTRLLLHVVLLYRFYS-HFPDRLVWKLVASSLPLHIYWFSNFIKQQKRIFKKRKLAALNS 226          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|1134792911|gb|OMJ08775.1| (hypothetical protein AYI69_g10937 [Smittium culicis])

HSP 1 Score: 104.76 bits (260), Expect = 1.275e-23
Identity = 65/204 (31.86%), Postives = 101/204 (49.51%), Query Frame = 0
Query:   43 FTQTSKDGQGPSQKQKAWFLSFFISCLS-TPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASS 245
            F    K+    ++KQ AW L+ F+SC++ T   + YL        D + ++ +D+FS      F  YL  D+A+G   Y   F  ++G+ HH  Y L + Y  + GYS  F    IME  +I L+ G +   LR DW F   F   R++ H+ LL + YS   P   +W  VA    LH+YWF  +++  +R  ++ K    +S
Sbjct:   25 FYIVRKNSSYSTEKQLAWVLT-FVSCVTVTCASLPYLFLLFKNNLDVTRLISSDSFSLLTCGFFEAYLFWDLAIGMKYYRSTFDFITGYFHHAAYILLVYYVAVSGYSAIFVLCCIMELPTIVLAVGSIHKNLRKDWLFASCFFSTRLLLHVVLLYRFYSY-FPDRLVWKLVASSLPLHIYWFYNFIKQQKRIFKKRKLAALNS 226          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|1132416395|gb|OLY78402.1| (hypothetical protein AYI68_g7549 [Smittium mucronatum])

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-23
Identity = 66/204 (32.35%), Postives = 99/204 (48.53%), Query Frame = 0
Query:   43 FTQTSKDGQGPSQKQKAWFLSFFISCLS-TPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASS 245
            F    K+    ++KQ AW L+ F+SC++ T   + YL        D +  + +D+FS      F  YL  D+A+G   Y   F L++G+ HH  Y L + Y  + GYS  F    IME  +I L+ G +   +R DW F   F   R++ H+ LL + YS   P   +W  VA    LHLYWF  +++  +R  +  K     S
Sbjct:   25 FFIVRKNSSYTTEKQLAWVLT-FVSCVTVTCASLPYLYLLFKNNLDVTRCISSDSFSLLTCGFFEAYLFWDLAIGLRYYRSTFDLVTGYFHHGLYILMVYYVSVIGYSAIFVLCCIMELPTIVLAVGCINKNMRKDWLFASCFFSTRLLLHVVLLYRFYSY-FPDRLVWKLVASSLPLHLYWFSNFIKQQKRLYKNRKNASVVS 226          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|585107299|gb|EWM25533.1| (hypothetical protein Naga_100032g19 [Nannochloropsis gaditana])

HSP 1 Score: 101.293 bits (251), Expect = 1.105e-21
Identity = 67/190 (35.26%), Postives = 102/190 (53.68%), Query Frame = 0
Query:   56 KQKAWFLSFFISCLSTPLG-VYYLSRALSPE-WDASEML-DTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLKLYSLPAPRGDLWPPVAGVWVLHLYWFRGWM-QGMRRRAQQSKTG 241
            K+KAW +S   S L   LG + Y+ R +    +D  +M+   D  S  V++ F  +L++D+ VG   YP E   L+GW HH  Y     +A +   SIS   T+IME  ++ ++ GRL   +R+D+ FG  F   R+VY    + KL    +PR  +WP       LHL+WF+G++ Q MR R + S+ G
Sbjct:   74 KRKAWIMSVLCS-LGMSLGSLPYVYRLVYIHGFDTGKMVYADDRLSVFVMSFFMTFLVLDIVVGLRIYPSEISFLTGWFHHSLYMCACLWAMIHQISISAVATMIMEVPTLVMALGRLDKSMRNDFLFGSTFFATRIVYLGIYIYKLMCDVSPRVVVWPVCLPAMALHLFWFQGFIQQQMRLRTRSSEAG 262          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|757326779|gb|KIR32834.1| (hypothetical protein I352_04769 [Cryptococcus gattii VGII MMRL2647])

HSP 1 Score: 102.449 bits (254), Expect = 1.925e-21
Identity = 73/245 (29.80%), Postives = 115/245 (46.94%), Query Frame = 0
Query:   26 VFFSV----VLLCWYQAMCSYFTQTSKDGQGPSQKQKAWFLS----FFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLL---LKLYSLPAPRGDLWPPV--AGVWVLHLYWFRGWMQGMRRRAQQSKTG-EASSSMASPCGDSRD 256
            +FFS+    +    Y ++  YF          +++Q+A+ LS    +F++  S P    Y    LS  ++  ++    A  R  +  F  YL  D+ +GYF YP + GLL+GW+HH+ Y   +GY     +S  F    IME  +  L+   L+P +R D  F   F +FR+ +H YLL   L   S     G   P +  A    LH+ WF+G + G  RR  +SK   +++  + S  G   D
Sbjct:   20 LFFSIPLFLIFFLIYTSVAPYFA---------TERQRAYILSTISSWFMTLASLPFSWKYARHGLSTIYEEGQIGWMGALGRVSVVFFATYLFSDLVIGYFRYPSQVGLLTGWIHHVVYIGLMGYLLNTRHSPVFLTGAIMELPTFDLAMSNLYPSVRHDLRFLASFFIFRIAFHAYLLGDCLHSSSRTVTDGSWVPSIMLALAGALHVMWFKGGVTGYLRRLGRSKAKMDSAEELCSTMGGIPD 255          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|757340669|gb|KIR46612.1| (hypothetical protein I312_04099 [Cryptococcus gattii CA1280])

HSP 1 Score: 102.449 bits (254), Expect = 1.945e-21
Identity = 72/239 (30.13%), Postives = 111/239 (46.44%), Query Frame = 0
Query:   26 VFFSV----VLLCWYQAMCSYFTQTSKDGQGPSQKQKAWFLS----FFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLL---LKLYSLPAPRGDLWPPV--AGVWVLHLYWFRGWMQGMRRRAQQSKTGEASSSMASPC 251
            +FFS+    +    Y ++  YF          +++Q+A+ LS    +F++  S P    +    L   ++  +     A  R  +  F  YL  D+ +GYF YP + GLL+GW+HH  Y   +GY     +S  F    IME  +  L+   L+P +R D  F   F +FR+V+H YLL   L+  S     G   P +  A    LH+ WF+G + G  RR  +SK    + S   PC
Sbjct:   20 LFFSIPLFLIFFLIYISVAPYFA---------TERQRAYILSTMSSWFMTLASLPFAWKFARHGLGTIYEEGQNGWMGALGRVTVVFFATYLFSDLVIGYFRYPSQVGLLTGWIHHAVYIGLMGYLLNTRHSPVFLTGAIMELPTFDLAMSNLYPSVRHDLRFLASFFIFRIVFHAYLLGDCLRSSSRTVTDGSWVPSIMLALAGALHVMWFKGGVTGYLRRLGRSKA--KADSAEEPC 247          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|686628883|gb|KGB79683.1| (hypothetical protein CNBG_5521 [Cryptococcus gattii VGII R265] >gi|757322736|gb|KIR28814.1| hypothetical protein I309_02309 [Cryptococcus gattii VGII LA55] >gi|757333204|gb|KIR39237.1| hypothetical protein I313_04838 [Cryptococcus gattii VGII Ram5] >gi|757365356|gb|KIR71161.1| hypothetical protein I310_05052 [Cryptococcus gattii VGII CA1014] >gi|757389339|gb|KIR94659.1| hypothetical protein I304_00978 [Cryptococcus gattii VGII CBS 10090] >gi|757395518|gb|KIS00816.1| hypothetical protein L804_02237 [Cryptococcus gattii VGII 2001/935-1] >gi|761936734|gb|KIY57525.1| hypothetical protein I307_03017 [Cryptococcus gattii VGII 99/473])

HSP 1 Score: 102.449 bits (254), Expect = 1.964e-21
Identity = 73/245 (29.80%), Postives = 115/245 (46.94%), Query Frame = 0
Query:   26 VFFSV----VLLCWYQAMCSYFTQTSKDGQGPSQKQKAWFLS----FFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLL---LKLYSLPAPRGDLWPPV--AGVWVLHLYWFRGWMQGMRRRAQQSKTG-EASSSMASPCGDSRD 256
            +FFS+    +    Y ++  YF          +++Q+A+ LS    +F++  S P    Y    LS  ++  ++    A  R  +  F  YL  D+ +GYF YP + GLL+GW+HH+ Y   +GY     +S  F    IME  +  L+   L+P +R D  F   F +FR+ +H YLL   L   S     G   P +  A    LH+ WF+G + G  RR  +SK   +++  + S  G   D
Sbjct:   20 LFFSIPLFLIFFLIYTSVAPYFA---------TERQRAYILSTISSWFMTLASLPFSWKYARHGLSTIYEEGQIGWMGALGRVSVVFFATYLFSDLVIGYFRYPSQVGLLTGWIHHVVYIGLMGYLLNTRHSPVFLTGAIMELPTFDLAMSNLYPSVRHDLRFLASFFIFRIAFHAYLLGDCLHSSSRTVTDGSWVPSIMLALAGALHVMWFKGGVTGYLRRLGRSKAKMDSAEELCSTMGGIPD 255          
BLAST of EWM21768.1 vs. NCBI_GenBank
Match: gi|757354018|gb|KIR59848.1| (hypothetical protein I314_04283 [Cryptococcus gattii CA1873])

HSP 1 Score: 100.523 bits (249), Expect = 1.080e-20
Identity = 73/239 (30.54%), Postives = 111/239 (46.44%), Query Frame = 0
Query:   26 VFFSV----VLLCWYQAMCSYFTQTSKDGQGPSQKQKAWFLS----FFISCLSTPLGVYYLSRALSPEWDASEMLDTDAFSRSVLTLFWVYLIVDMAVGYFEYPGEFGLLSGWVHHIFYALFLGYAYMKGYSISFTHTLIMESSSIFLSGGRLFPRLRSDWAFGCLFLLFRVVYHLYLLLK-LYSLPAPRGDL-WPP---VAGVWVLHLYWFRGWMQGMRRRAQQSKTGEASSSMASPC 251
            +FFS+    +    Y ++  YF          +++Q+A+ LS    +F++  S P    +    L   ++  +     A  R  +  F  YL  D+ +GYF YP + GLL+GW+HH  Y   +GY     +S  F    IME  +  L+   L+P +R D  F   F +FR+V+H YLL   L S      D  W P   +A    LH+ WF+G + G  RR  +SK    + S   PC
Sbjct:   20 LFFSIPLFLIFFLIYTSVAPYFA---------TERQRAYILSTMSSWFMTLASLPFAWKFARHGLGTIYEEGQNGWMGALGRVTVVFFATYLFSDLVIGYFRYPSQVGLLTGWIHHAVYIGLMGYLLNTRHSPVFLTGAIMELPTFDLAMSNLYPSVRHDLRFLASFFIFRIVFHAYLLGDCLRSSSRTVTDCSWVPSIMLALAGALHVMWFKGGVTGYLRRLGRSKA--KADSAEEPC 247          
The following BLAST results are available for this feature:
BLAST of EWM21768.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102102|gb|EWM21768.1|0.000e+0100.00TRAM, LAG1 and CLN8 lipid-sensing domain containin... [more]
gi|585101859|gb|EWM21604.1|3.852e-3133.33hypothetical protein Naga_100012g31 [Nannochlorops... [more]
gi|1134794693|gb|OMJ09798.1|9.705e-2431.86hypothetical protein AYI70_g10724 [Smittium culici... [more]
gi|1134792911|gb|OMJ08775.1|1.275e-2331.86hypothetical protein AYI69_g10937 [Smittium culici... [more]
gi|1132416395|gb|OLY78402.1|1.880e-2332.35hypothetical protein AYI68_g7549 [Smittium mucrona... [more]
gi|585107299|gb|EWM25533.1|1.105e-2135.26hypothetical protein Naga_100032g19 [Nannochlorops... [more]
gi|757326779|gb|KIR32834.1|1.925e-2129.80hypothetical protein I352_04769 [Cryptococcus gatt... [more]
gi|757340669|gb|KIR46612.1|1.945e-2130.13hypothetical protein I312_04099 [Cryptococcus gatt... [more]
gi|686628883|gb|KGB79683.1|1.964e-2129.80hypothetical protein CNBG_5521 [Cryptococcus gatti... [more]
gi|757354018|gb|KIR59848.1|1.080e-2030.54hypothetical protein I314_04283 [Cryptococcus gatt... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8939rna8939Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications