rna8936, rna8936 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8936
Unique Name	rna8936
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2138
Alignment location	KK037250.1:522354..524634 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100298g6.7618.mrna
Orig protein id	gnl\|cribi\|Naga_100298g6.7618
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:522354..524634 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100298g6	gene8664	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8936	rna8936-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21762.1	cds8906	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:522354..524634-
coding sequence from alignment at KK037250.1:522354..524634-

mRNA sequence

>rna8936 ID=rna8936|Name=rna8936|organism=Nannochloropsis gaditana|type=mRNA|length=2138bp
TATTGTTCTATGGAACGGGGCCATTCACCCATTCCTTATGCTTTCCCTCC
CTCCCTTTCTAAAATCCCATGGTACACTATCTGCGCATGCACCGACCAAG
TTGCCCTTTGATAAAGACGCAATATTATATCATGGCAGCCTCAGCGGGGC
AAATGCTCCTGGATGGGCAGCGTACCTCTGGACAAGATGTACGTACAGCT
AATGTAACAGCTTCTATGGCTATTGCCAACATCGTGAAATCTTCCTTGGG
ACCAGTCGGGCTCGACAAAATGCTTGTCGATGACATAGGGGATGTCACCA
TCACGAATGACGGCGCTACCATCCTGCAACAATTGGAGGTGGAGCATCCT
GCAGCGAAGGTTCTTGTCGAGTTGGCACACCTGCAAGACCAAGAAGTGGG
GGACGGGACCACCTCCGTCGTGATTGTAGCGGCCGAACTCTTGAAGCGTG
GGAACGAGCTGGTCATGAACAAGGTCCATCCCACGAGTATCATGAGCGGA
TATAGGTTGGCGCTAAAGGAGGCTGTAAGATTCATTAAAGATAAATTGGT
GGTTTCCGTGGACCAGCTTCGGCAAGAAAACCTGCTCAACGCGGCGCGCA
CGTCCATGAGCAGCAAGATCTTGGGAGCAGAAGCGGACTTCTTCGCCAAG
CTGGCCGTGGAAGCTGTCTTGTCCGTGAAGACAGACAGCCAGCACAGGGA
TTCGGGGAAGACGGTCAGTAAGTACCCCGTCTCTGCCATCCACATCCTCA
AGTGCCACGGCCAATCCTCCCTTTCTTCCCACCTGGTGAATGGCTTCGCG
CTGGCCGGGGCTCGAGCCGCGCAAGGCATGCCCACGTCCGTCTCTCCGGC
GAAAATTGCCCTGTTGGATTTTAGCCTGCAGCGTCATAAAATGCAGATGG
GGGTGTCCGTCGTAGTGGAGGACGTCAAGGAAGTGGAACTCATCCGGCAG
AGAGAAATGGACATAACCAAAGAACGGATCCAGAAGATTTTGGAGGCCGG
GGCCAACGTCGTCCTGACGACCAAGGGTATCGATGACCTGGCCATGAAAT
ACTTCGTCGAGGCGGGGGCGATGGCGGTGCGCCGGGTCAAGAAAGAAGAC
TTGAAACGGATCGCGCGGGCGACAGGGGGCCAGGTGATCGGTACCTTGGC
GGACATGGAGGGGAACGAGGCCTTCGACCCAAGCATGCTAGGCCTGGCGG
AGAGGGTGGAGGAGCGTCGGGTAGGGGACGGGGAGATGCTTTACATTTTA
GGGGCCAAGGAAGGAAAAGCGGCCACAGTTGTCCTCCGGGGGGCAAACGA
CTACATGCTCGACGAAATGGACCGGGCCTTGCATGACGCCTTGATGGTGA
TCAAACGCATGCTGGAAAGCAATTCTTTGGTGGCGGGAGGGGGCGCGGTC
GAGGCCGCTTTATCCGTGCACTTGGAGAAATACGCCATGACTTTGGGAAG
CAAGGAGCAATTAGCCATCGCCGCCTTTTCAGACGCGCTTTTGGTCATTC
CTAGGACCTTGGCCGTCAATGCGGCCCAGGATGCCACCGAGCTGGTGGCA
AACCTACGGGCGGCGCATTTTGGGGCCCAGCAGCAGCAGCAACAGCCCTC
GTCGCAGCCGTCACAGGTCCCGCCCGAGCGGGCGGGAGGGGGCGCGGCCA
TGGTTGAGGATGGAGGAGGGGAAATTTCCAAGAAAGCGGGGGGGGGCGCG
GAAGAGGGGATGTGGTACGCAGGCCTGGACCTGTACAAGGGCCTGGTGCG
GAACAATCTGGCCGCAGGGGTGGTGGAGCCCGCCATCAGCAAGATCAAAA
GCCTGCGCTTCGCTACCGAGGCAGCAATAACCATTTTGAGGATCGATGAC
ATGATCAAATTGACAGAAAAATCACCGGGACCGCCGGACGGACGCGGGGA
GGGGAAGATTGTGTGGAAGGTGAGTGTCAGTGCCGATGTGCAGGGGACCA
GCGACGTGTCGCCCGCGTGCTTGGTTGTGAATGTGGAGGGAGGAGGGACA
CTCGGGGACAAGCAGGCTGGTGAAGTGGACGGATCGGATCGAGAAAGGTG
TGCACGGGGCTCCGTTTTGGGAAAAGAGGGGAGCAATTTAAGGAGCGAGA
CGCAGACAGGAGGGCTATTCATGGACGGCTTTCGATGA

protein sequence of rna8936

>rna8936-protein ID=rna8936-protein|Name=rna8936|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAV
ACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRP
GSYDVGTEMTRVPA

mRNA from alignment at KK037250.1:522354..524634-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8936 ID=rna8936|Name=rna8936|organism=Nannochloropsis gaditana|type=mRNA|length=2281bp|location=Sequence derived from alignment at KK037250.1:522354..524634- (Nannochloropsis gaditana)
ACGACTAACTTACGCACAGGGCATTGTTTGATACCTTGGACTGTCCATCT
TAATTGCCAGGGTCGCCACCGGGGGAAGGGACGTCGGCGCGCAGGTTCAA
ACGGGCTGCCAAGAAGACAGCGAGTCTTTCGTGTGCGCGCGTTGGAAGTC
AAGACCGACGCGTTTGAAAGGAGGACAAGCAGGAGAGGGCAATGGCGCTA
CCATGCACGACTGAGTGCTGTGAGTATCCTGTCAGGGGGATCCTTTTCTT
CGATTCTCCCCCCCCCTCCTATCTTTCCGACTCTTCCCTGTGTTTTCTCT
TCCCCTCACTCCTGCGGGAATGCGCGGGCTGATATCCTCACATTTCACAA
TATTGCACACCGGAATGTTTGGTTCACTCAACAGGTGCACCGTGCTGTGG
CATATTTTCCATCATCGGCTTCCTCTTTTTGATCATTTTGGGGATAATTG
TTGACAAACAGCCTATCTTCGTGCATGGGGTAACTGAACCGCACAGATCA
GCCGTGGCCTGTTACGGAGGCGGTACGTGACGCGAGATGGTTAACAAGTT
GAGGGATAGATGAGAAGGCAAAGAGCCAGGGAATGACACGGTCTTGGCAG
GCTTTGGGGGATCGCGGGGGCAGAGCCTTCAAGGAAAAGAGAAGAGATGC
AGGCGGGACGTGGATTGCAGGACGCCACAACGATTATGTTCTGGTCTCAC
CCCTTTTCTTTTTTCTCTCTAACGATTGGCACAGCGGGTATTTACGCGGG
CACCCTTGCTCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGG
AGCACCGGGCCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCT
CTCAACATCCAGCGACCAGGATCATACGGTGCGACCACTCGCTAGCCCCA
CTTGACTAATAATGTAGGCGTACTCATGAACATTCCCCCTTTGAAGCCTT
TGTGTGAAGGAGAGGGACCGCGTGCTTTGACTGTCTTTCTTCTTGGTGTC
GAGCGTTTGTGTAATTTCGTCTAGCCGGGTGTTTGGAGCCATGGGTAGGA
GAGGAATGCGATGCATTGCGTGTAGGGGGGTGGCGAACGTCTGTATCGTG
CCTCTTGCTTCCTGTACCCCCCCCCAAGTCTGGGAGGAGTGTGCGTGGTT
GTGGACACGTGAGGAGGAGCTGAAAAAGTGCAGGAACATGCGGAGGAGCG
GGTGCCTGGGGGAGATAGATCGAGGAAGAAAGAAAGAGGCTGGGATCCAG
ACACCCTTTGAACGACCGCCACACCGCTTGTTCCTCGGGGCATGTCGATG
GGCGTCGCCTCTGAACACCTTCCCAGACCCTCGTTTTCTCCTCCTGTTGC
GTTCCCAAGATGGGAAGGAGAAAGGGATGATCCCTCCCTGGCGTTCGTGT
TGGTTTCCTCTTGCTTCCCCCGCCCCTTCCTTGTCTGTTCCTGTGCGTGC
GTACTCCATTTCACTCCACCCTTTGATGATGAGAAAACAAGACCTTTCCT
TTTAAGGGGTAACGGCCTGTGTCAGGACGTCAGCCTTTCCCATGCCAGCC
TTTCCTTCCAAATGGCGCTTTCAAACTCTCTCACGTCTCCCTCTTCCTTT
TTTTGGTACCCCTTGCCTACAGACGTGGGCACAGAGATGACGCGCGTTCC
AGCTTGAGGACTCGAGGCTTGAACGACAAAGGAGGAGAGGAACGGATGGA
GATGTGTACTGAAAGGGGCGTCGCGTGTGGGGGAGGGAAGGAGAGGAACC
AAATGCAGAAAATAAACAGGCGAGGAGATCAAAAAGGTGCAGGTAGGAAG
AGACTGCTTCGGCATTTTGGCGGAGCCTATGTGTGAAAAGCGGATGTTTA
GATTGAGGAAAGCATAGAGTGCATAAGACAATTATTGATGGGGGAAGATG
CAGGATAAACTGAATATTGGAAGGGAAAGTGGTGGAGAAGAGCCGCTGGT
GGAACACCTGGAGAGAGTCTAGGCACGCGGAGTTGCAATCGACCGTCGCT
CTATTTTGAGGCAAGCGAGACAAATGTCAAAGGTTTACTGTTCTGTGGAA
TCGCATATTTCCTTCGGCTGCGCTTTTGTCCCCCTCCGCCTTGTTACCGC
GGTGCCTGTCGCCTTCATCGAAAGCCGTCCATGAATAGCCCTCCTGTCTG
CGTCTCGCTCCTTAAATTGCTCCCCTCTTTTCCCAAAACGGAGCCCCGTG
CACACCTTTCTCGATCCGATCCGTCCACTTCACCAGCCTGCTTGTCCCCG
AGTGTCCCTCCTCCCTCCACATTCACAACCA

Coding sequence (CDS) from alignment at KK037250.1:522354..524634-

>rna8936 ID=rna8936|Name=rna8936|organism=Nannochloropsis gaditana|type=CDS|length=1380bp|location=Sequence derived from alignment at KK037250.1:522354..524634- (Nannochloropsis gaditana)
ACGTGGGCACAGAGATGACGCGCGTTCCAGCTTGACGGGTATTTACGCGG
GCACCCTTGCTCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAG
GAGCACCGGGCCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTC
TCTCAACATCCAGCGACCAGGATCATACGGTGCACCGTGCTGTGGCATAT
TTTCCATCATCGGCTTCCTCTTTTTGATCATTTTGGGGATAATTGTTGAC
AAACAGCCTATCTTCGTGCATGGGGTAACTGAACCGCACAGATCAGCCGT
GGCCTGTTACGGAGGCGATGGCGCTACCATGCACGACTGAGTGCTACGTG
GGCACAGAGATGACGCGCGTTCCAGCTTGACGGGTATTTACGCGGGCACC
CTTGCTCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGGAGCA
CCGGGCCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCTCTCA
ACATCCAGCGACCAGGATCATACGGTGCACCGTGCTGTGGCATATTTTCC
ATCATCGGCTTCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACA
GCCTATCTTCGTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCT
GTTACGGAGGCGATGGCGCTACCATGCACGACTGAGTGCTACGTGGGCAC
AGAGATGACGCGCGTTCCAGCTTGACGGGTATTTACGCGGGCACCCTTGC
TCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGGAGCACCGGG
CCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCTCTCAACATC
CAGCGACCAGGATCATACGGTGCACCGTGCTGTGGCATATTTTCCATCAT
CGGCTTCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTA
TCTTCGTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTAC
GGAGGCGATGGCGCTACCATGCACGACTGAGTGCTACGTGGGCACAGAGA
TGACGCGCGTTCCAGCTTGACGGGTATTTACGCGGGCACCCTTGCTCTAT
GTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGGAGCACCGGGCCGCG
ACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCTCTCAACATCCAGCG
ACCAGGATCATACGGTGCACCGTGCTGTGGCATATTTTCCATCATCGGCT
TCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTATCTTC
GTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTACGGAGG
CGATGGCGCTACCATGCACGACTGAGTGCT

Synonyms

Publications