EWM21762.1, cds8906 (CDS) Nannochloropsis gaditana

Overview
NameEWM21762.1
Unique Namecds8906
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:524416..524443 -
Alignment locationKK037250.1:524113..524250 -
Alignment locationKK037250.1:523757..523900 -
Alignment locationKK037250.1:522978..523012 -

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Properties
Property NameValue
Protein idEWM21762.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100298g6.7618.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:524416..524443 -
KK037250.1supercontigKK037250.1:524113..524250 -
KK037250.1supercontigKK037250.1:523757..523900 -
KK037250.1supercontigKK037250.1:522978..523012 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21762.1 vs. NCBI_GenBank
Match: gi|585102096|gb|EWM21762.1| (hypothetical protein Naga_100298g6 [Nannochloropsis gaditana])

HSP 1 Score: 236.113 bits (601), Expect = 8.657e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYDVGTEMTRVPA 114
            MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYDVGTEMTRVPA
Sbjct:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYDVGTEMTRVPA 114          
BLAST of EWM21762.1 vs. NCBI_GenBank
Match: gi|585102097|gb|EWM21763.1| (hypothetical protein Naga_100298g6 [Nannochloropsis gaditana] >gi|585102098|gb|EWM21764.1| hypothetical protein Naga_100298g6 [Nannochloropsis gaditana])

HSP 1 Score: 214.542 bits (545), Expect = 1.979e-70
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 0
Query:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYDVGTE 108
            MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSY   T 
Sbjct:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGATTR 108          
BLAST of EWM21762.1 vs. NCBI_GenBank
Match: gi|953499933|emb|CEG38574.1| (hypothetical protein PHALS_08638 [Plasmopara halstedii])

HSP 1 Score: 56.6102 bits (135), Expect = 4.932e-8
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 0
Query:   13 CCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDK 74
            C  IFS IGF+FL+++G ++  QPI++H    P+  A +C+  A +YA  + +C   W  +K
Sbjct:    7 CGTIFSFIGFVFLVVVGCLLKLQPIYIHNAKTPNSGANSCFEAAMLYAVAMGVCYTLWRKEK 68          
BLAST of EWM21762.1 vs. NCBI_GenBank
Match: gi|673021756|ref|XP_008864839.1| (hypothetical protein H310_02923 [Aphanomyces invadans] >gi|574479770|gb|ETW06764.1| hypothetical protein H310_02923 [Aphanomyces invadans])

HSP 1 Score: 55.8398 bits (133), Expect = 1.090e-7
Identity = 26/78 (33.33%), Postives = 45/78 (57.69%), Query Frame = 0
Query:   13 CCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEE 90
            CC IFS+ G  FL+ +G ++  QP F+  V  P  SA +C+  AG+YAG     ++ W  ++  K   +++ G +K++
Sbjct:    5 CCSIFSLAGTTFLLCMGALLRLQPEFIRDVHTPKSSANSCFVSAGLYAGVFVGSMILWRREQHVKG--SSSVGEIKDD 80          
BLAST of EWM21762.1 vs. NCBI_GenBank
Match: gi|1210524972|dbj|GAX16164.1| (hypothetical protein FisN_3Hh355 [Fistulifera solaris])

HSP 1 Score: 55.0694 bits (131), Expect = 1.628e-7
Identity = 23/70 (32.86%), Postives = 36/70 (51.43%), Query Frame = 0
Query:   13 CCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAA 82
            CC  +S  GFLF + +G++V  QP F+ G+ +   +    +G  G++  T    +    YD K KE  AA
Sbjct:   11 CCAFYSFTGFLFTLWVGVMVHSQPFFIAGIEDAEEARANAFGAMGMFLVTFFASIAGIWYDSKNKESVAA 80          
The following BLAST results are available for this feature:
BLAST of EWM21762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102096|gb|EWM21762.1|8.657e-79100.00hypothetical protein Naga_100298g6 [Nannochloropsi... [more]
gi|585102097|gb|EWM21763.1|1.979e-7096.30hypothetical protein Naga_100298g6 [Nannochloropsi... [more]
gi|953499933|emb|CEG38574.1|4.932e-837.10hypothetical protein PHALS_08638 [Plasmopara halst... [more]
gi|673021756|ref|XP_008864839.1|1.090e-733.33hypothetical protein H310_02923 [Aphanomyces invad... [more]
gi|1210524972|dbj|GAX16164.1|1.628e-732.86hypothetical protein FisN_3Hh355 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8936rna8936Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications