rna8934, rna8934 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8934
Unique Name	rna8934
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2980
Alignment location	KK037250.1:519875..522520 +

Link to JBrowse

Properties


Property Name	Value
Product	t-complex protein 1 subunit alpha
Orig transcript id	gnl\|cribi\|Naga_100298g8.7623.mrna
Orig protein id	gnl\|cribi\|Naga_100298g8.7623
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:519875..522520 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100298g8	gene8663	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8934	rna8934-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21767.1	cds8904	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:519875..522520+
coding sequence from alignment at KK037250.1:519875..522520+

mRNA sequence

>rna8934 ID=rna8934|Name=rna8934|organism=Nannochloropsis gaditana|type=mRNA|length=2980bp
GGGGTGGTGCAGCCTCTGAAGGAGGGATCATGTGGTTGAGGGCTGTCCCG
TCGTCTTTTAACCGGATTTGTGTAGTGCGCTGGCATGCGAGCATCTCCCT
GTTGAGCATGGCGAGGAAACCTCAATAACGACTAAAAGCGGATGGGAGAG
GACACGACCATGCAGCTAACTTTCCCGCATTACAAGATCCAGAAAAAACT
GATACAAGTCTTTTAGCGACTATTATTAGGAAAAAGAATGCTAGTCAGAG
TGATTGAGCTCCACGTGGTCGTAGACTATCTTCATGCCTTTACTAATCGT
CGCTTTTTCAACGCCCCTCACAACACACTGCTAGCTACCATCATATCGGC
GTGACCTTGGAAAGAGATGCGTTTTGGAAAAAGGAGATAGTCTGAGCCTG
CTACAGTAGCAGCAGTTGCGGCAGCAAGTGTAAAAACATTCGGGTGGACG
TTTGTCGAGAAGCGTGTGCATAATTCAGCGCTGCAATTGCTACAAATTGA
CGTGGAGACTTCCTTTCTCTTGTGCTGAGTGTCCAAGCTGCCTTGGAGAG
TCCACCGAATCTTATACAAGCAAAAGAAGGCCAGAAAAGGTGGGGCAGGC
CCTTTTAGAGGCGGGGGGAAACATCCTTTGTAGAAGGGAAGGAAAGGAGG
CAGTGTAAAAACCGCCTATCTGAAGTCCGTAGCTCAAGCGGCAAGGTGTG
GAACGCAGTTGTGACAGAAAGCGTTGCCGCGTCTAGGGAAGAGAAAAATG
GCAGATAATCCCTTGCAAGTTGGGCATTACCGCCTGCTCAAGACCCTGGG
TATCGGAGCTTTTGGAAAAGTCAAGCTCGGCAAGCACATCATCACAGGGC
ACCTGGTGGCTATCAAGATCTTGAATCGCAATCGCATCAAGCAGCTGGAC
ATGGGGGAGAAAGTGCGCCGGGAGATCAATATCCTAAAGATGTGTACACA
CCCGCACATCATTCGTCTGTACGAAGTTATCGACACGCCCACGGATATCT
TCGTTGTCATGGAATACGTCCCGAATGGCGAGCTTTTCGACTACATCGTC
TCCAAAGGCCGTTTAAACGCGGATGAAGCGCGGAGGTTCTTCCACCAAAT
CATCTCCGGAGTCGAGTACTGCCACTTCCATCATATCGTCCACCGGGACT
TGAAACCCGAGAACCTCCTTCTGGACGCGGACAACAACATCAAACTCGCC
GATTTCGGCCTCAGCAACATCATGAAAGACGGCGATTTCCTCCGCACCTC
CTGTGGCTCTCCCAACTACGCCGCCCCCGAAGTTATCTCTGGGAACCTAT
ACGCAGGTCCTGAGGTGGACGTGTGGAGCTGTGGCGTCATCCTCTACGCC
CTCCTGTGCGGCTCCCTCCCCTTCGACGACGAGAGCATCCCCAACTTGTT
CAAAAAGATAAAAAGCGGCATGTACACCCTGCCTTCCCACCTCTCGCAGC
TTGCCCGGGATCTGATCCCTCGGATGCTGGTGGTGGACCCGATGAAAAGG
ATCACCATCCCCGAGATCCGTCTCCATCCCTGGTACCAGCACAAGCTTCC
CGGCTACCTCCGCCTTCCTCCAGAACTGATGGAGAAGCAGGAGCGTGTGA
TAGACGAGGACTGCATTCGGGCGGTATGCTCCTACCCTTTCCGAGGCGTG
ACCTGGCAGCGGGTGTTGGACGCGATCCAACGCCGGAACCAACGCCATGA
CCTGAAGGTGGCGTATGAGATCATTCTCGACCACAAGCAAGCCAAGCAGC
GCACGGCGGAAGTAATGATGCTCATGCAGCAGACCCAACACGACGCCACG
CCCCCGGCTTTCTCCCCCCAACAACACCGGACACCCGGTTCGGGCTCCAT
GACTCCCACCACCCCTTCCCAGAATACGGCCGCCCAGCAACGCCTTGCCG
AGGAAGCCTCGCGGGCCCTCGCGCGTCACAACCCGTCGGGCACGGGGTCC
GGGGGGAGCAACAGCGGCGGTGTCACGCCCCAGCATCTGTCTGGCTCGGC
CTCTAACTCCGGCACTGCCTTATCCTCCGGGAGCACGTCCCTCCATCAAC
AACAAGCCGCCGCGGCCGCGGCCAGGAAACGTCGTTGGTACCTGGGCATC
CAGTCCAAGAAGGACCCGGCCCATGTCATGACCGAAGTCTACAAGGCCCT
CCTTCAGCTAAGATGCGAGTGGTCAGCCGTCTCCTCCTATCGGCTCAAGT
GCCGCTGGCGCCCCAATGCCGTGGTCCTCCAACCCCACCCTTCCGTGCAC
GACCCCCAATTCCTGGGGGCGCTCTCTCGACAGGCGTCCACCTCCAGAGG
AAGCGGGCGGTGGCCCAGCGGACATGGGCCCGGGGCATTGGCCTTGAGAA
AGCGCACGTCGTCCTCGGGAGGAGGGGGAGGGGAGGCGGCCATGGAGGAA
GACCATGATTTTTGGCCCGTGGACCCGGACGCGGAGGATATCGGGGCGGA
GAATCCCCTTCTGAATTATGACTACACGGTTATCATCGGCTTGAATTTGT
ACAAGGTCCAGCAGAACATCTACCTTCTCGATTTCCAACGCGTGGAGGGG
GACGGGTTCTCGTTCATGAATTTGTCTGCCAAGATCATCACGGAGCTCAA
GACGTTGTCCGCGGCCTCCCGACAGCAAGCCCAGGCAGCGCAGGCGGCAC
AACAGGCCATGTTACAGCAGCAGCAGCAACAACAGCAGCAACAACAACAG
CAACAGCAGCAACAACAACAGCAGCAACAACAACAACAGCAGCAGCAGCA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACGAA

protein sequence of rna8934

>rna8934-protein ID=rna8934-protein|Name=rna8934|organism=Nannochloropsis gaditana|type=polypeptide|length=510bp
MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKC
HGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGV
SVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYF
VEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAER
VEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIK
RMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPR
TLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMV
EDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSL
RFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSD
VSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQ
TGGLFMDGFR

mRNA from alignment at KK037250.1:519875..522520+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8934 ID=rna8934|Name=rna8934|organism=Nannochloropsis gaditana|type=mRNA|length=2646bp|location=Sequence derived from alignment at KK037250.1:519875..522520+ (Nannochloropsis gaditana)
taTTGTTCTATGGAACGGGGCCATTCACCCATTCCTtatgctttccctcc
ctccctttctaaAATCCCATGGTACACTATCTGCGCATGCACCGACCAAG
TTGCCCTTTGATAAAGTAGGTGACGTCGCTTGCCGGCATAGCTTGGAAAG
CAAGTCGAAAGATAACTCATTTTTTTATCTCTCATAAAAtttctcacctt
cctccctccttttcacttTTTTGGTTGCATTACTAGGACGCAATATTATA
TCATGGCAGCCTCAGCGGGGCAAATGCTCCTGGATGGGCAGCGTACCTCT
GGACAAGATGTACGTACAGCTAATGTAACAGCTTCTATGGCTATTGCCAA
CATCGTGAAATCTTCCTTGGGACCAGTCGGGCTCGACAAAATGCTTGTCG
ATGACATAGGGGATGTCACCATCACGAATGACGGCGCTACCATCCTGCAA
CAATTGGAGGTGGAGCATCCTGCAGCGAAGGTTCTTGTCGAGTTGGCACA
CCTGCAAGACCAAGAAGTGGGGGACGGGACCACCTCCGTCGTGATTGTAG
CGGCCGAACTCTTGAAGCGTGGGAACGAGCTGGTCATGAACAAGGTCCAT
CCCACGAGTATCATGAGCGGATATAGGTTGGCGCTAAAGGAGGCTGTAAG
ATTCATTAAAGATAAATTGGTGGTTTCCGTGGACCAGGTAAGACTGGGGG
CTAGGAGAGGGAGACTAGTCCCTAGGATGTCTCTTACGAGCCCCGCGCCA
ACAAACCGGGACCACCATACGTAACCCCCACGAAAGAGCTCACATCCTTT
GCACAGATTCTTTTGTATTTCCATTCTACCAGATCATGTCGAGCATTCGT
CGCGATTCTAATCAtgcacccctcccttcttcccactcGGTTTCATAGCT
TCGGCAAGAAAACCTGCTCAACGCGGCGCGCACGTCCATGAGCAGCAAGA
TCTTGGGAGCAGAAGCGGACTTCTTCGCCAAGCTGGCCGTGGAAGCTGTC
TTGTCCGTGAAGACAGACAGCCAGCACAGGGATTCGGGGAAGACGGTCAG
TAAGTACCCCGTCTCTGCCATCCACATCCTCAAGTGCCACGGccaatcct
ccctttcttcccacctGGTGAATGGCTTCGCGCTGGCCGGGGCTCGAGCC
GCGCAAGGCATGCCCACGTCCGTCTCTCCGGCGAAAATTGCCCTGTTGGA
TTTTAGCCTGCAGCGTCATAAAATGCAGATGGGGGTGTCCGTCGTAGTGG
AGGACGTCAAGGAAGTGGAACTCATCCGGCAGAGAGAAATGGACATAACC
AAAGAACGGATCCAGAAGATTTTGGAGGCCGGGGCCAACGTCGTCCTGAC
GACCAAGGGTATCGATGACCTGGCCATGAAATACTTCgtcgaggcggggg
cgatggCGGTGCGCCGGGTCAAGAAAGAAGACTTGAAACGGATCGCGCGG
GCGACAGGGGGCCAGGTGATCGGTACCTtggcggacatggaggggaaCGA
GGCCTTCGACCCAAGCATGCTAGGCCtggcggagagggtggaggagcgtC
GGGTAGGGGACGGGGAGATGCTTTACATTTTAGgggccaaggaaggaaaa
gcggcCACAGTTGTCCTCCGGGGGGCAAACGACTACATGCTCGACGAAAT
GGACCGGGCCTTGCATGACGCCTTGATGGTGATCAAACGCATGCTGGAAA
GCAATTCTTtggtggcgggagggggcgcggtCGAGGCCGCTTTATCCGTG
CACTTGGAGAAATACGCCATGACTTTGGGAAGCAAGGAGCAATTagccat
cgccgccttttcAGACGCGCTTTTGGTCATTCCTAGGACCTTGGCCGTCA
ATGCGGCCCAGGATGCCACCGAGCTGGTGGCAAACCTACGGGCGGCGCAT
TTTGGggcccagcagcagcagcaacagccctCGTCGCAGCCGTCACAGGT
CCCGCCcgagcgggcgggagggggcgcggccatggttgaggatggaggag
gggaaatttccaagaaagcgggggggggcgcggaaGAGGGGATGTGGTAC
GCAGGCCTGGACCTGTACAAGGGCCTGGTGCGGAACAATCTGGCCGCAGG
GGTGGTGGAGCCCGCCATCAGCAAGATCAAAAGCCTGCGCTTCGCTACCG
AGGCAGCAATAACCATTTTGAGGATCGATGACATGATCAAATTGACAGAA
AAATCACCGGGACCGCCGGACGGACGTGGGGGCATGCAATAAGCAGGGCA
CGTAGGGGGGATCCCAGGGCATAGCAGTCCTCGGACCAGGCTGTTACATT
GCGCGCTgttgaggggggggcgagggtaAGAATTTTGGAAATGGGGTGTG
ACGGGAGTGGGGATTAGCAGGCCCAGGGCTGCGATTCTTTAcacggggga
ggcggggaggggaagattgTGTGGAAGGTGAGTGTCAGTGCCGATGTGCA
GGGGACCAGCGACGTGTCGCCCGCGTGCTTGGTTGtgaatgtggagggag
gagggacactCGGGGACAAGCAGGCTGGTGAAGTggacggatcggatcga
gaAAGGTGTGCACGGGGCTCCGTtttgggaaaagaggggagcaATTTAAG
GAGCGAGACGCAGACAGGAGGGCTATTCATGGACGGCTTTCGATGA

Coding sequence (CDS) from alignment at KK037250.1:519875..522520+

>rna8934 ID=rna8934|Name=rna8934|organism=Nannochloropsis gaditana|type=CDS|length=3066bp|location=Sequence derived from alignment at KK037250.1:519875..522520+ (Nannochloropsis gaditana)
ATGAGCAGCAAGATCTTGGGAGCAGAAGCGGACTTCTTCGCCAAGCTGGC
CGTGGAAGCTGTCTTGTCCGTGAAGACAGACAGCCAGCACAGGGATTCGG
GGAAGACGGTCAGTAAGTACCCCGTCTCTGCCATCCACATCCTCAAGTGC
CACGGccaatcctccctttcttcccacctGGTGAATGGCTTCGCGCTGGC
CGGGGCTCGAGCCGCGCAAGGCATGCCCACGTCCGTCTCTCCGGCGAAAA
TTGCCCTGTTGGATTTTAGCCTGCAGCGTCATAAAATGCAGATGGGGGTG
TCCGTCGTAGTGGAGGACGTCAAGGAAGTGGAACTCATCCGGCAGAGAGA
AATGGACATAACCAAAGAACGGATCCAGAAGATTTTGGAGGCCGGGGCCA
ACGTCGTCCTGACGACCAAGGGTATCGATGACCTGGCCATGAAATACTTC
gtcgaggcgggggcgatggCGGTGCGCCGGGTCAAGAAAGAAGACTTGAA
ACGGATCGCGCGGGCGACAGGGGGCCAGGTGATCGGTACCTtggcggaca
tggaggggaaCGAGGCCTTCGACCCAAGCATGCTAGGCCtggcggagagg
gtggaggagcgtCGGGTAGGGGACGGGGAGATGCTTTACATTTTAGgggc
caaggaaggaaaagcggcCACAGTTGTCCTCCGGGGGGCAAACGACTACA
TGCTCGACGAAATGGACCGGGCCTTGCATGACGCCTTGATGGTGATCAAA
CGCATGCTGGAAAGCAATTCTTtggtggcgggagggggcgcggtCGAGGC
CGCTTTATCCGTGCACTTGGAGAAATACGCCATGACTTTGGGAAGCAAGG
AGCAATTagccatcgccgccttttcAGACGCGCTTTTGGTCATTCCTAGG
ACCTTGGCCGTCAATGCGGCCCAGGATGCCACCGAGCTGGTGGCAAACCT
ACGGGCGGCGCATTTTGGggcccagcagcagcagcaacagccctCGTCGC
AGCCGTCACAGGTCCCGCCcgagcgggcgggagggggcgcggccatggtt
gaggatggaggaggggaaatttccaagaaagcgggggggggcgcggaaGA
GGGGATGTGGTACGCAGGCCTGGACCTGTACAAGGGCCTGGTGCGGAACA
ATCTGGCCGCAGGGGTGGTGGAGCCCGCCATCAGCAAGATCAAAAGCCTG
CGCTTCGCTACCGAGGCAGCAATAACCATTTTGAGGATCGATGACATGAT
CAAATTGACAGAAAAATCACCGGGACCGCCGGACGGACgcggggagggga
agattgTGTGGAAGGTGAGTGTCAGTGCCGATGTGCAGGGGACCAGCGAC
GTGTCGCCCGCGTGCTTGGTTGtgaatgtggagggaggagggacactCGG
GGACAAGCAGGCTGGTGAAGTggacggatcggatcgagaAAGGTGTGCAC
GGGGCTCCGTtttgggaaaagaggggagcaATTTAAGGAGCGAGACGCAG
ACAGGAGGGCTATTCATGGACGGCTTTCGATGAATGAGCAGCAAGATCTT
GGGAGCAGAAGCGGACTTCTTCGCCAAGCTGGCCGTGGAAGCTGTCTTGT
CCGTGAAGACAGACAGCCAGCACAGGGATTCGGGGAAGACGGTCAGTAAG
TACCCCGTCTCTGCCATCCACATCCTCAAGTGCCACGGccaatcctccct
ttcttcccacctGGTGAATGGCTTCGCGCTGGCCGGGGCTCGAGCCGCGC
AAGGCATGCCCACGTCCGTCTCTCCGGCGAAAATTGCCCTGTTGGATTTT
AGCCTGCAGCGTCATAAAATGCAGATGGGGGTGTCCGTCGTAGTGGAGGA
CGTCAAGGAAGTGGAACTCATCCGGCAGAGAGAAATGGACATAACCAAAG
AACGGATCCAGAAGATTTTGGAGGCCGGGGCCAACGTCGTCCTGACGACC
AAGGGTATCGATGACCTGGCCATGAAATACTTCgtcgaggcgggggcgat
ggCGGTGCGCCGGGTCAAGAAAGAAGACTTGAAACGGATCGCGCGGGCGA
CAGGGGGCCAGGTGATCGGTACCTtggcggacatggaggggaaCGAGGCC
TTCGACCCAAGCATGCTAGGCCtggcggagagggtggaggagcgtCGGGT
AGGGGACGGGGAGATGCTTTACATTTTAGgggccaaggaaggaaaagcgg
cCACAGTTGTCCTCCGGGGGGCAAACGACTACATGCTCGACGAAATGGAC
CGGGCCTTGCATGACGCCTTGATGGTGATCAAACGCATGCTGGAAAGCAA
TTCTTtggtggcgggagggggcgcggtCGAGGCCGCTTTATCCGTGCACT
TGGAGAAATACGCCATGACTTTGGGAAGCAAGGAGCAATTagccatcgcc
gccttttcAGACGCGCTTTTGGTCATTCCTAGGACCTTGGCCGTCAATGC
GGCCCAGGATGCCACCGAGCTGGTGGCAAACCTACGGGCGGCGCATTTTG
GggcccagcagcagcagcaacagccctCGTCGCAGCCGTCACAGGTCCCG
CCcgagcgggcgggagggggcgcggccatggttgaggatggaggagggga
aatttccaagaaagcgggggggggcgcggaaGAGGGGATGTGGTACGCAG
GCCTGGACCTGTACAAGGGCCTGGTGCGGAACAATCTGGCCGCAGGGGTG
GTGGAGCCCGCCATCAGCAAGATCAAAAGCCTGCGCTTCGCTACCGAGGC
AGCAATAACCATTTTGAGGATCGATGACATGATCAAATTGACAGAAAAAT
CACCGGGACCGCCGGACGGACgcggggaggggaagattgTGTGGAAGGTG
AGTGTCAGTGCCGATGTGCAGGGGACCAGCGACGTGTCGCCCGCGTGCTT
GGTTGtgaatgtggagggaggagggacactCGGGGACAAGCAGGCTGGTG
AAGTggacggatcggatcgagaAAGGTGTGCACGGGGCTCCGTtttggga
aaagaggggagcaATTTAAGGAGCGAGACGCAGACAGGAGGGCTATTCAT
GGACGGCTTTCGATGA

Synonyms

Publications