EWM21767.1, cds8904 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21767.1
Unique Name	cds8904
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037250.1:520812..522099 +
Alignment location	KK037250.1:522276..522520 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21767.1
Product	t-complex protein 1 subunit alpha
Orig transcript id	gnl\|cribi\|Naga_100298g8.7623.mrna
Gbkey	CDS
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:520812..522099 +
KK037250.1	supercontig	KK037250.1:522276..522520 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0000166	nucleotide binding
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027409	GroEL-like_apical_dom
IPR002423	Cpn60/TCP-1
IPR027413	GROEL-like_equatorial
IPR017998	Chaperone_TCP-1

Homology

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BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|585102100|gb|EWM21766.1| (t-complex protein 1 subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 1032.32 bits (2668), Expect = 0.000e+0
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 510
            MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR
Sbjct:  180 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 689

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BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|585102101|gb|EWM21767.1| (t-complex protein 1 subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 1029.24 bits (2660), Expect = 0.000e+0
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 510
            MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR
Sbjct:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 510

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BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|553188006|ref|XP_005854716.1| (t-complex protein 1 subunit alpha [Nannochloropsis gaditana CCMP526] >gi|422294343|gb|EKU21643.1| t-complex protein 1 subunit alpha [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 430/431 (99.77%), Postives = 430/431 (99.77%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRG 431
            MSSKILGAEADFFAKLAVEAVLSVK DSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRG
Sbjct:  159 MSSKILGAEADFFAKLAVEAVLSVKADSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRG 589

[Close]

BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|698814768|ref|XP_009840413.1| (T-complex protein 1, alpha subunit [Aphanomyces astaci] >gi|574104439|gb|ETV69970.1| T-complex protein 1, alpha subunit [Aphanomyces astaci])

HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0
Identity = 277/422 (65.64%), Postives = 324/422 (76.78%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 422
            MSSKI+G E+DFFA L V+AV SVKT ++    GKT++KYPVSAI++LK HG+S+L S LV+GFAL   RA+Q MP+SV PAKIALLDF LQRHKMQMGV +VV D KE++ IRQRE+DITKERIQKIL+AGANV+LTTKGIDDL MKYFVEAG M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FD + LG A  V E RVGDGE++YI G    +A TVVLRGAN+ +LDEMDR+LHD+LMV+KR+LESN LVAGGGAVEAALS++LE YA TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDDMI+L  K
Sbjct:  154 MSSKIIGPESDFFANLVVDAVTSVKT-TEDGAKGKTITKYPVSAINVLKAHGKSALESQLVDGFALNCTRASQAMPSSVRPAKIALLDFDLQRHKMQMGVQMVVNDPKELDQIRQREIDITKERIQKILDAGANVILTTKGIDDLCMKYFVEAGCMGVRRCKKEDLRRIAKATGGQVVLTLADMEGGETFDAAALGTAAEVSEERVGDGELIYIKGCANRQATTVVLRGANEMLLDEMDRSLHDSLMVVKRLLESNQLVAGGGAVEAALSIYLETYATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQTD------------------------------------AAQTDLRFSGLDLLQGKVRNNLVAGVVEPAISKIKSLRFATEAAITILRIDDMIRLNPK 538

[Close]

BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|673045993|ref|XP_008876957.1| (T-complex protein 1, alpha subunit [Aphanomyces invadans] >gi|574467171|gb|ETV94195.1| T-complex protein 1, alpha subunit [Aphanomyces invadans])

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 276/422 (65.40%), Postives = 324/422 (76.78%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 422
            MSSKI+G E++FFA L V+AV SVKT ++    GK V+KYPVSAI++LK HG+S+L S LV+GFAL   RA+Q MPTSV PAKIALLDF LQRHKMQMGV +VV D KE++ IRQRE+DITKERIQKIL+AGANV+LTTKGIDDL MKYFVEAG M VRR KKEDL+RIA+ATGGQV+ TLADM+G E FD + LG A  V E RVGDGE++YI G    +A TVVLRGAN+ +LDEMDR+LHD+LMV+KRMLESN LVAGGGAVE+ALS++LE YA TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VR+NLAAGVVEPAISKIKSLRFATEAAITILRIDDMI+L  K
Sbjct:  154 MSSKIIGPESEFFANLVVDAVTSVKT-TEEGAKGKVVTKYPVSAINVLKAHGKSALESQLVDGFALNCTRASQAMPTSVRPAKIALLDFDLQRHKMQMGVQMVVNDPKELDQIRQREVDITKERIQKILDAGANVILTTKGIDDLCMKYFVEAGCMGVRRCKKEDLRRIAKATGGQVVLTLADMDGGETFDAASLGTAAEVSEERVGDGELIYIKGCANRQATTVVLRGANEMLLDEMDRSLHDSLMVVKRMLESNQLVAGGGAVESALSIYLETYATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQTD------------------------------------AAQTALRFSGLDLQRGNVRDNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIRLNPK 538

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BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|299473185|emb|CBN78761.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 536.184 bits (1380), Expect = 0.000e+0
Identity = 277/430 (64.42%), Postives = 326/430 (75.81%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGR 430
            MSSKILG E+DFFA++AV+AV +V+T+S   D GK V KYPVSA+HILKCHG S L S +  G+AL   RA+QGMPTSV  AKIA LD +LQR+KMQMGV VVV DVKEV+ IRQREMDITKERI+KIL +GA VVLTTKGIDDL +KYFVEAGAMAVRRVKKED++RIA+ATG  ++ TLADMEGNE FDP +LG A+ V E+RVGDGE+++  G K   + TVVLRGAND+MLDEMDRALHD+LMVIKRMLESN LVAGGG+VE ALS++LE +A TLGS+EQLAIA F++ALLVIP+TLAVNAAQDATELVA LRA H  +Q Q+ +   +                                    + GL+L +G VR+NLA GVVEPAISKIKS RFATEAAITILRIDDMIKL ++    P  R
Sbjct:  149 MSSKILGPESDFFAEMAVDAVTAVRTESGG-DLGKKVVKYPVSAVHILKCHGLSLLDSKVEPGYALNCVRASQGMPTSVQNAKIACLDINLQRYKMQMGVQVVVNDVKEVDAIRQREMDITKERIEKILSSGATVVLTTKGIDDLCLKYFVEAGAMAVRRVKKEDMRRIAKATGASIVTTLADMEGNETFDPEVLGQADEVSEQRVGDGELIFFKGTKTQASCTVVLRGANDFMLDEMDRALHDSLMVIKRMLESNVLVAGGGSVETALSIYLESFATTLGSREQLAIAEFAEALLVIPKTLAVNAAQDATELVAKLRAYHNTSQLQEDKTEYR------------------------------------HYGLELVEGKVRDNLACGVVEPAISKIKSFRFATEAAITILRIDDMIKLDKQEQEDPRAR 541

[Close]

BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|301119511|ref|XP_002907483.1| (T-complex protein 1 subunit alpha [Phytophthora infestans T30-4] >gi|262105995|gb|EEY64047.1| T-complex protein 1 subunit alpha [Phytophthora infestans T30-4])

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 271/422 (64.22%), Postives = 320/422 (75.83%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 422
            MSSKILG E+DFFA L V+AV SV+ + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQKI++AGANV+LTTKGIDDL +KYFVE+G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HDA MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q    Q                                      + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:  157 MSSKILGPESDFFANLVVDAVSSVRVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKIIDAGANVILTTKGIDDLCLKYFVESGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDAFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQSDASQRE------------------------------------LRFSGLDLLEGTVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

[Close]

BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|567977518|gb|ETL28020.1| (T-complex protein 1, alpha subunit [Phytophthora parasitica])

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 270/422 (63.98%), Postives = 321/422 (76.07%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 422
            MSSKILG E+DFFA L V+AV SVK + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQK+++AGANV+LTTKGIDDL +KYFVE+G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HDA MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+D+LLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:  157 MSSKILGPESDFFANLVVDAVSSVKVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKMIDAGANVILTTKGIDDLCLKYFVESGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDAFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADSLLVIPKTLAVNAAKDASELVARLRAHHNTSQ------------------------------------SDAAQRKLRFSGLDLLEGTVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

[Close]

BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|675176381|ref|XP_008897075.1| (T-complex protein 1, alpha subunit [Phytophthora parasitica INRA-310] >gi|566011325|gb|ETI34236.1| T-complex protein 1, alpha subunit [Phytophthora parasitica P1569] >gi|567948861|gb|ETK74598.1| T-complex protein 1, alpha subunit [Phytophthora parasitica] >gi|568007031|gb|ETL81276.1| T-complex protein 1, alpha subunit [Phytophthora parasitica] >gi|568036882|gb|ETM34482.1| T-complex protein 1, alpha subunit [Phytophthora parasitica] >gi|568102853|gb|ETN17524.1| T-complex protein 1, alpha subunit [Phytophthora parasitica INRA-310] >gi|570315043|gb|ETO62991.1| T-complex protein 1, alpha subunit [Phytophthora parasitica P1976] >gi|570938874|gb|ETP04131.1| T-complex protein 1, alpha subunit [Phytophthora parasitica CJ01A1] >gi|570969090|gb|ETP32209.1| T-complex protein 1, alpha subunit [Phytophthora parasitica P10297] >gi|970619023|gb|KUF67065.1| T-complex protein 1 subunit alpha [Phytophthora nicotianae] >gi|970660841|gb|KUF98359.1| Axonemal dynein light intermediate polypeptide 1 [Phytophthora nicotianae])

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 270/422 (63.98%), Postives = 321/422 (76.07%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 422
            MSSKILG E+DFFA L V+AV SVK + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQK+++AGANV+LTTKGIDDL +KYFVE+G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HDA MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+D+LLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:  157 MSSKILGPESDFFANLVVDAVSSVKVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKMIDAGANVILTTKGIDDLCLKYFVESGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDAFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADSLLVIPKTLAVNAAKDASELVARLRAHHNTSQ------------------------------------SDAAQRELRFSGLDLLEGTVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

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BLAST of EWM21767.1 vs. NCBI_GenBank
Match: gi|695384381|ref|XP_009517985.1| (hypothetical protein PHYSODRAFT_553624 [Phytophthora sojae] >gi|348690896|gb|EGZ30710.1| hypothetical protein PHYSODRAFT_553624 [Phytophthora sojae])

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 271/422 (64.22%), Postives = 320/422 (75.83%), Query Frame = 0

Query:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 422
            MSSKILG E+DFFA L V+AV SVK + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQK+++AGANV+LTTKGIDDL +KYFVE G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HD+ MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       AE  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:  157 MSSKILGPESDFFANLVVDAVSSVKVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKMIDAGANVILTTKGIDDLCLKYFVENGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDSFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQ------------------------------------SDAAESELRFSGLDLLEGNVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

The following BLAST results are available for this feature:

BLAST of EWM21767.1 vs. NCBI_GenBank

BLAST of EWM21767.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585102100\|gb\|EWM21766.1\|	0.000e+0	100.00	t-complex protein 1 subunit alpha [Nannochloropsis...	[more]
gi\|585102101\|gb\|EWM21767.1\|	0.000e+0	100.00	t-complex protein 1 subunit alpha [Nannochloropsis...	[more]
gi\|553188006\|ref\|XP_005854716.1\|	0.000e+0	99.77	t-complex protein 1 subunit alpha [Nannochloropsis...	[more]
gi\|698814768\|ref\|XP_009840413.1\|	0.000e+0	65.64	T-complex protein 1, alpha subunit [Aphanomyces as...	[more]
gi\|673045993\|ref\|XP_008876957.1\|	0.000e+0	65.40	T-complex protein 1, alpha subunit [Aphanomyces in...	[more]
gi\|299473185\|emb\|CBN78761.1\|	0.000e+0	64.42	conserved unknown protein [Ectocarpus siliculosus]	[more]
gi\|301119511\|ref\|XP_002907483.1\|	0.000e+0	64.22	T-complex protein 1 subunit alpha [Phytophthora in...	[more]
gi\|567977518\|gb\|ETL28020.1\|	0.000e+0	63.98	T-complex protein 1, alpha subunit [Phytophthora p...	[more]
gi\|675176381\|ref\|XP_008897075.1\|	0.000e+0	63.98	T-complex protein 1, alpha subunit [Phytophthora p...	[more]
gi\|695384381\|ref\|XP_009517985.1\|	0.000e+0	64.22	hypothetical protein PHYSODRAFT_553624 [Phytophtho...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8934	rna8934	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications